Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,781,027 C→G intergenic (‑151/+58) ypjA ← / ← b2648 putative ATP‑binding component of a transport system/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,781,0270CG100.0% 880.3 / NA 282intergenic (‑151/+58)ypjA/b2648putative ATP‑binding component of a transport system/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (128/154);  total (128/154)

Only 100 of 282 total aligned reads displayed.

ACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑A‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT  >  NC_000913/2780939‑2781115
                                                                                          |                                                                                        
  gCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCaaaa                                                                                     >  1:1317271/1‑93 (MQ=255)
    aGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCaaaata                                                                                   >  2:5864491/1‑93 (MQ=255)
     gTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCaaaataa                                                                                  >  2:1254906/1‑93 (MQ=255)
      tGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAA‑GCCGTTGGCaaaataaa                                                                                 >  2:4290570/1‑93 (MQ=255)
      tGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCaaaataaa                                                                                 >  2:6289457/1‑93 (MQ=255)
       gcgcTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCaaaataaaa                                                                                <  1:7061787/93‑1 (MQ=25)
          cTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGa                                                                             >  1:7497782/1‑93 (MQ=255)
           tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGAt                                                                            >  2:2664024/1‑93 (MQ=255)
           tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGAt                                                                            <  1:3112885/93‑1 (MQ=25)
           tGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGAt                                                                            >  2:451064/1‑93 (MQ=255)
           tGAAGTGTGGGTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGAt                                                                            <  1:5526631/93‑1 (MQ=25)
            gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGAtt                                                                           >  2:482505/1‑93 (MQ=255)
            gAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGAtt                                                                           <  1:606020/93‑1 (MQ=25)
              aGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTa                                                                         <  2:2412404/93‑1 (MQ=37)
              aGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTa                                                                         <  2:2986372/93‑1 (MQ=37)
                tgtgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACa                                                                       >  1:2572655/1‑93 (MQ=255)
                tgtgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACa                                                                       <  1:7190366/93‑1 (MQ=37)
                tgtgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACa                                                                       <  2:2108771/93‑1 (MQ=37)
                  tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATa                                                                     >  2:4118500/1‑93 (MQ=255)
                  tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATa                                                                     <  2:101346/93‑1 (MQ=255)
                    gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAAt                                                                   <  1:6140167/93‑1 (MQ=37)
                        gATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGtt                                                               >  2:3607155/1‑93 (MQ=255)
                        gATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGtt                                                               <  1:896266/93‑1 (MQ=38)
                         aTAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGttt                                                              <  1:2663086/93‑1 (MQ=38)
                          tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                             <  1:3705622/93‑1 (MQ=38)
                          tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                             <  2:5090782/93‑1 (MQ=38)
                          tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                             >  2:6418871/1‑93 (MQ=255)
                          tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                             >  2:134566/1‑93 (MQ=255)
                          tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTc                                                             >  2:3789767/1‑93 (MQ=255)
                            aaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtg                                                           >  1:5823823/1‑93 (MQ=255)
                             aaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga                                                          <  1:2588323/93‑1 (MQ=38)
                               aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg                                                        >  1:1074025/1‑93 (MQ=255)
                               aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg                                                        <  1:4989816/93‑1 (MQ=37)
                                aGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatga                                                       <  1:3394792/93‑1 (MQ=37)
                                 gTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGaa                                                      >  1:6280173/1‑93 (MQ=255)
                                    aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat                                                   >  1:5580907/1‑93 (MQ=255)
                                    aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat                                                   >  1:5871683/1‑93 (MQ=255)
                                    aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat                                                   <  2:4405707/93‑1 (MQ=37)
                                    aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat                                                   >  1:3888397/1‑93 (MQ=255)
                                     aTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtc                                                  >  1:2159081/1‑93 (MQ=255)
                                     aTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtc                                                  <  2:6186214/93‑1 (MQ=25)
                                      tCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtct                                                 >  2:218032/1‑93 (MQ=255)
                                       ccATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtctt                                                <  2:230465/93‑1 (MQ=255)
                                        cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                               <  1:4169650/93‑1 (MQ=25)
                                        cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                               <  1:2438403/93‑1 (MQ=25)
                                        cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttc                                               <  1:285367/93‑1 (MQ=255)
                                         aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                              <  1:1730328/93‑1 (MQ=25)
                                         aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                              >  2:3171383/1‑93 (MQ=255)
                                         aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                              >  1:3452702/1‑93 (MQ=255)
                                         aTTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAtcttct                                              >  2:6539760/1‑93 (MQ=255)
                                          ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                             <  1:689004/93‑1 (MQ=25)
                                          ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                             >  2:1834470/1‑93 (MQ=255)
                                          ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTg                                             <  2:4566581/93‑1 (MQ=25)
                                           tCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGc                                            <  2:7302500/93‑1 (MQ=25)
                                             aGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTc                                          >  2:5379182/1‑93 (MQ=255)
                                              ggAAATACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTca                                         <  2:5708393/93‑1 (MQ=21)
                                                aaaTACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTcaca                                       <  1:1561568/93‑1 (MQ=21)
                                                 aaTACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATCTCTTCTGCTCACAt                                      <  2:5190939/93‑1 (MQ=21)
                                                  aTACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATa                                     <  1:1701516/93‑1 (MQ=255)
                                                  aTACGGGCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATa                                     <  2:6995390/93‑1 (MQ=21)
                                                      gggCGTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaaa                                 <  1:4667352/93‑1 (MQ=255)
                                                          gTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac                             >  2:2784569/1‑93 (MQ=18)
                                                          gTATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac                             <  1:3949441/93‑1 (MQ=17)
                                                           tATTCTTTTCTTTCGACAATG‑AGGCCGTTTGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                            <  2:5433432/93‑1 (MQ=17)
                                                           tATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                            >  2:7050942/1‑93 (MQ=18)
                                                           tATTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcaca                            >  1:1468588/1‑93 (MQ=18)
                                                            aTTCTTTTCTTTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacac                           >  1:425155/1‑93 (MQ=17)
                                                             ttcttttcttTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacaca                          >  2:1181552/1‑93 (MQ=17)
                                                             ttcttttcttTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacaca                          <  1:5373711/93‑1 (MQ=17)
                                                             ttcttttcttTCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcacaca                          >  1:6073614/1‑93 (MQ=17)
                                                               cttttctttCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAt                        >  1:1132893/1‑93 (MQ=17)
                                                               cttttctttCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAt                        >  1:7273587/1‑93 (MQ=17)
                                                                ttttctttCGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATa                       >  2:4959435/1‑93 (MQ=17)
                                                                 tttctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATaa                      >  1:2465429/1‑93 (MQ=17)
                                                                  ttctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                     >  2:3586749/1‑93 (MQ=255)
                                                                  ttctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                     <  2:3385556/93‑1 (MQ=17)
                                                                  ttctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                     >  2:1588728/1‑93 (MQ=17)
                                                                  ttctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc                     >  1:3903487/1‑93 (MQ=14)
                                                                    ctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                   <  2:2877816/93‑1 (MQ=255)
                                                                    ctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                   >  1:2040991/1‑93 (MQ=17)
                                                                    ctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                   <  2:1683969/93‑1 (MQ=255)
                                                                    ctttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt                   <  1:5676677/93‑1 (MQ=255)
                                                                     tttcGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACttt                  <  2:3278193/93‑1 (MQ=255)
                                                                        cGACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgag               <  1:4577329/93‑1 (MQ=255)
                                                                         gACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga              >  2:798739/1‑93 (MQ=18)
                                                                         gACAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTgaga              <  2:3972283/93‑1 (MQ=255)
                                                                          aCAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt             <  1:6764911/93‑1 (MQ=255)
                                                                          aCAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt             <  1:4887668/93‑1 (MQ=255)
                                                                          aCAATG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAt             <  2:7473031/93‑1 (MQ=255)
                                                                            aaTG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCg           >  1:6605572/1‑93 (MQ=18)
                                                                            aaTG‑AGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCg           >  1:2741198/1‑93 (MQ=18)
                                                                               tgaggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCa         <  2:1435080/89‑1 (MQ=255)
                                                                                gaggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAg        <  2:1960601/90‑1 (MQ=255)
                                                                                 aggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGa       <  2:5853082/91‑1 (MQ=255)
                                                                                 aggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGa       <  2:7230215/91‑1 (MQ=255)
                                                                                   gCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAtt     <  2:1787223/93‑1 (MQ=255)
                                                                                    ccGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTg    >  2:1570910/1‑93 (MQ=255)
                                                                                     cGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGt   <  1:1883923/93‑1 (MQ=255)
                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt  <  1:2211271/93‑1 (MQ=255)
                                                                                      gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTACTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGtt  >  1:4753684/1‑93 (MQ=255)
                                                                                          |                                                                                        
ACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATG‑A‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT  >  NC_000913/2780939‑2781115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  NC_000913/2780936‑2781120
                                                                                            |                                                                                             
TAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGC                                                                                              <  SRR4302542.7030423/94‑1 (MQ=60)
TAAACGAAGTGGGCTGAAGGGTGGTTGAATAAAAAAGTCAATCCATTCAGGAAATCCGGGCTTATTCTTTTCTTTCGACAATGAGGCCGTTGGC                                                                                              <  SRR4302542.2373281/94‑1 (MQ=60)
    CGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCATGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAA                                                                                          >  SRR4302542.4763837/1‑94 (MQ=60)
    CGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAA                                                                                          >  SRR4302542.1328623/1‑94 (MQ=60)
    CGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAA                                                                                          >  SRR4302542.7306839/1‑94 (MQ=60)
     GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                         <  SRR4302542.392399/94‑1 (MQ=60)
     GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                         >  SRR4302542.275174/1‑94 (MQ=60)
     GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                         <  SRR4302542.1398105/94‑1 (MQ=60)
     GCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAAT                                                                                         >  SRR4302542.3820649/1‑94 (MQ=60)
         TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAA                                                                                     >  SRR4302542.2822353/1‑94 (MQ=60)
         TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAA                                                                                     <  SRR4302542.2299029/94‑1 (MQ=60)
         TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAA                                                                                     <  SRR4302542.265528/94‑1 (MQ=60)
         TGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAA                                                                                     >  SRR4302542.2712572/1‑94 (MQ=60)
          GCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAAT                                                                                    <  SRR4302542.7131097/94‑1 (MQ=60)
           CGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATG                                                                                   <  SRR4302542.423353/94‑1 (MQ=60)
            GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGA                                                                                  <  SRR4302542.5285038/94‑1 (MQ=60)
            GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGA                                                                                  >  SRR4302542.7571475/1‑94 (MQ=60)
            GCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGA                                                                                  >  SRR4302542.6122552/1‑94 (MQ=60)
             CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAT                                                                                 >  SRR4302542.606562/1‑94 (MQ=60)
             CTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAT                                                                                 <  SRR4302542.2564772/94‑1 (MQ=60)
              TGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATT                                                                                <  SRR4302542.3142462/94‑1 (MQ=60)
              TGAAGTGTGGGTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATT                                                                                <  SRR4302542.5580348/94‑1 (MQ=60)
               GAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTT                                                                               <  SRR4302542.611238/94‑1 (MQ=60)
                AAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTA                                                                              <  SRR4302542.5575998/94‑1 (MQ=60)
                 AGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTAC                                                                             <  SRR4302542.962078/94‑1 (MQ=60)
                  GTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACA                                                                            >  SRR4302542.2597577/1‑94 (MQ=60)
                   TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACAT                                                                           <  SRR4302542.3982075/94‑1 (MQ=60)
                   TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACAT                                                                           <  SRR4302542.7260915/94‑1 (MQ=60)
                   TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACAT                                                                           <  SRR4302542.4936353/94‑1 (MQ=60)
                     TGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAA                                                                         <  SRR4302542.2651143/94‑1 (MQ=60)
                       GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATC                                                                       <  SRR4302542.6199580/94‑1 (MQ=60)
                       GTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATC                                                                       >  SRR4302542.5926978/1‑94 (MQ=60)
                        TTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCG                                                                      <  SRR4302542.627384/94‑1 (MQ=60)
                          GGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTT                                                                    >  SRR4302542.3027449/1‑94 (MQ=60)
                          GGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTT                                                                    <  SRR4302542.1849531/94‑1 (MQ=60)
                          GGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTT                                                                    <  SRR4302542.7029962/94‑1 (MQ=60)
                           GATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTT                                                                   <  SRR4302542.904029/94‑1 (MQ=60)
                            ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                  <  SRR4302542.5429864/94‑1 (MQ=60)
                            ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                  <  SRR4302542.6560345/94‑1 (MQ=60)
                            ATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTC                                                                  <  SRR4302542.2688789/94‑1 (MQ=60)
                             TAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCT                                                                 <  SRR4302542.3742291/94‑1 (MQ=60)
                              AAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTG                                                                >  SRR4302542.5880359/1‑94 (MQ=60)
                              AAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTG                                                                <  SRR4302542.3466688/94‑1 (MQ=60)
                                AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              <  SRR4302542.2613399/94‑1 (MQ=60)
                                AAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGAT                                                              >  SRR4302542.734667/1‑94 (MQ=60)
                                 AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                             <  SRR4302542.248598/94‑1 (MQ=60)
                                 AAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATG                                                             >  SRR4302542.1083258/1‑94 (MQ=60)
                                  AAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGA                                                            <  SRR4302542.5038239/94‑1 (MQ=60)
                                   AGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAA                                                           >  SRR4302542.150022/1‑94 (MQ=60)
                                   AGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAA                                                           >  SRR4302542.7271415/1‑94 (MQ=60)
                                   AGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAA                                                           <  SRR4302542.3426642/94‑1 (MQ=60)
                                   AGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAA                                                           >  SRR4302542.6342060/1‑94 (MQ=60)
                                    GTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAAT                                                          <  SRR4302542.1108072/94‑1 (MQ=60)
                                    GTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAAT                                                          <  SRR4302542.3008675/94‑1 (MQ=60)
                                      CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                        >  SRR4302542.3926785/1‑94 (MQ=60)
                                      CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                        >  SRR4302542.5635135/1‑94 (MQ=60)
                                      CAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATAT                                                        >  SRR4302542.5928607/1‑94 (MQ=60)
                                       AATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATC                                                       >  SRR4302542.6710808/1‑94 (MQ=60)
                                       AATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATC                                                       >  SRR4302542.2177674/1‑94 (MQ=60)
                                         TCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTT                                                     <  SRR4302542.5859450/94‑1 (MQ=60)
                                          CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    <  SRR4302542.2200074/94‑1 (MQ=60)
                                          CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    <  SRR4302542.6883388/94‑1 (MQ=60)
                                          CCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTC                                                    <  SRR4302542.6537749/94‑1 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302542.4210774/94‑1 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302542.2462130/94‑1 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302542.5988269/94‑1 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   >  SRR4302542.3485001/1‑94 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302542.2609951/94‑1 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302542.3373206/94‑1 (MQ=60)
                                           CATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCT                                                   <  SRR4302542.287853/94‑1 (MQ=60)
                                            ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  <  SRR4302542.2058420/94‑1 (MQ=60)
                                            ATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTG                                                  <  SRR4302542.1745342/94‑1 (MQ=60)
                                             TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                 <  SRR4302542.694955/94‑1 (MQ=60)
                                             TTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGC                                                 >  SRR4302542.4505853/1‑94 (MQ=60)
                                               CAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTC                                               >  SRR4302542.5646467/1‑94 (MQ=60)
                                                 GGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCAC                                             <  SRR4302542.4774776/94‑1 (MQ=60)
                                                  GAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACA                                            >  SRR4302542.3735575/1‑94 (MQ=60)
                                                   AAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACAT                                           <  SRR4302542.4233194/94‑1 (MQ=60)
                                                   AAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACAT                                           <  SRR4302542.1575064/94‑1 (MQ=60)
                                                     ATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAA                                         >  SRR4302542.6195296/1‑94 (MQ=60)
                                                     ATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAA                                         <  SRR4302542.1716263/94‑1 (MQ=60)
                                                     ATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAA                                         <  SRR4302542.219789/94‑1 (MQ=60)
                                                      TACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAA                                        <  SRR4302542.4069756/94‑1 (MQ=60)
                                                       ACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAA                                       >  SRR4302542.4895281/1‑94 (MQ=60)
                                                       ACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAA                                       <  SRR4302542.925917/94‑1 (MQ=60)
                                                        CGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAA                                      <  SRR4302542.4414120/94‑1 (MQ=60)
                                                         GGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAT                                     <  SRR4302542.4712974/94‑1 (MQ=60)
                                                         GGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAT                                     <  SRR4302542.2430387/94‑1 (MQ=60)
                                                          GGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATC                                    >  SRR4302542.575034/1‑94 (MQ=60)
                                                          GGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATC                                    <  SRR4302542.4887875/94‑1 (MQ=60)
                                                          GGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATC                                    <  SRR4302542.3369877/94‑1 (MQ=60)
                                                          GGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATC                                    >  SRR4302542.7249849/1‑94 (MQ=60)
                                                           GCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCA                                   <  SRR4302542.1149656/94‑1 (MQ=60)
                                                             GTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                 <  SRR4302542.3988440/94‑1 (MQ=60)
                                                             GTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACA                                 >  SRR4302542.1481266/1‑94 (MQ=60)
                                                              TATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACAC                                >  SRR4302542.428797/1‑94 (MQ=59)
                                                               ATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACA                               >  SRR4302542.6132442/1‑94 (MQ=56)
                                                                TTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              >  SRR4302542.4092430/1‑94 (MQ=54)
                                                                TTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              <  SRR4302542.7145259/94‑1 (MQ=54)
                                                                TTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              <  SRR4302542.5425927/94‑1 (MQ=54)
                                                                TTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAA                              <  SRR4302542.7600074/94‑1 (MQ=54)
                                                                 TCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             >  SRR4302542.7344881/1‑94 (MQ=52)
                                                                 TCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             <  SRR4302542.3451218/94‑1 (MQ=52)
                                                                 TCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             >  SRR4302542.1142590/1‑94 (MQ=52)
                                                                 TCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAT                             >  SRR4302542.5040094/1‑94 (MQ=52)
                                                                   TTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAA                           >  SRR4302542.2489367/1‑94 (MQ=47)
                                                                    TTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAC                          >  SRR4302542.3942018/1‑94 (MQ=47)
                                                                      TCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT                        >  SRR4302542.2058639/1‑94 (MQ=47)
                                                                       CTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       <  SRR4302542.5731804/94‑1 (MQ=49)
                                                                       CTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTT                       <  SRR4302542.7524901/94‑1 (MQ=49)
                                                                        TTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTG                      <  SRR4302542.1263854/94‑1 (MQ=52)
                                                                          TCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302542.6947553/94‑1 (MQ=56)
                                                                          TCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302542.168283/94‑1 (MQ=56)
                                                                          TCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAG                    <  SRR4302542.6151396/94‑1 (MQ=56)
                                                                           CGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGA                   <  SRR4302542.4622110/94‑1 (MQ=59)
                                                                            GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                  >  SRR4302542.1348410/1‑94 (MQ=60)
                                                                            GACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGAT                  >  SRR4302542.2150331/1‑94 (MQ=60)
                                                                             ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                 <  SRR4302542.5608320/94‑1 (MQ=60)
                                                                             ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                 <  SRR4302542.4935215/94‑1 (MQ=60)
                                                                             ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                 <  SRR4302542.6831447/94‑1 (MQ=60)
                                                                             ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                 >  SRR4302542.5895597/1‑94 (MQ=60)
                                                                             ACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATC                 <  SRR4302542.2609466/94‑1 (MQ=60)
                                                                              CAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302542.3599490/1‑94 (MQ=60)
                                                                              CAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                <  SRR4302542.4965886/94‑1 (MQ=60)
                                                                              CAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302542.2767627/1‑94 (MQ=60)
                                                                              CAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCG                >  SRR4302542.6670650/1‑94 (MQ=60)
                                                                               AATGAGGCCGTTGGCAAAATAAAATGGTTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGC               >  SRR4302542.1880507/1‑94 (MQ=60)
                                                                                ATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCA              <  SRR4302542.271322/94‑1 (MQ=60)
                                                                                 TGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG             >  SRR4302542.1649390/1‑94 (MQ=60)
                                                                                 TGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAG             >  SRR4302542.1905695/1‑94 (MQ=60)
                                                                                  gagGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGA            >  SRR4302542.6675327/4‑94 (MQ=60)
                                                                                  gagGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGA            >  SRR4302542.2555983/4‑94 (MQ=60)
                                                                                  gagGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGA            >  SRR4302542.4663713/4‑94 (MQ=60)
                                                                                   agGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           <  SRR4302542.2172895/92‑1 (MQ=60)
                                                                                   agGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGAT           <  SRR4302542.6287359/92‑1 (MQ=60)
                                                                                   G‑GCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATT          >  SRR4302542.3981880/1‑94 (MQ=60)
                                                                                      CCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGT        >  SRR4302542.5664642/1‑94 (MQ=60)
                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       <  SRR4302542.1531018/94‑1 (MQ=60)
                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       >  SRR4302542.3905595/1‑94 (MQ=60)
                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       >  SRR4302542.889168/1‑94 (MQ=60)
                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       <  SRR4302542.1900232/94‑1 (MQ=60)
                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       >  SRR4302542.174342/1‑94 (MQ=60)
                                                                                       CGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTACTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTT       >  SRR4302542.4799990/1‑94 (MQ=60)
                                                                                        GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      <  SRR4302542.1823876/94‑1 (MQ=60)
                                                                                        GTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTT      <  SRR4302542.2230303/94‑1 (MQ=60)
                                                                                         TTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTT     >  SRR4302542.6812250/1‑94 (MQ=60)
                                                                                          TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA    <  SRR4302542.1170652/94‑1 (MQ=60)
                                                                                          TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA    <  SRR4302542.1404302/94‑1 (MQ=60)
                                                                                          TGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTA    >  SRR4302542.3208392/1‑94 (MQ=60)
                                                                                           GGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTAC   >  SRR4302542.6087700/1‑94 (MQ=60)
                                                                                            GCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  <  SRR4302542.790070/94‑1 (MQ=60)
                                                                                            |                                                                                             
TAAACGCAGTGCGCTGAAGTGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTTTGAGATCGCAGATTGTTTTACT  >  NC_000913/2780936‑2781120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑