Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,894,766 A→G T400T (ACT→ACC)  ygcS ← putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,894,7660AG89.9% 735.9 / 63.6 278T400T (ACT→ACC) ygcSputative transport protein
Reads supporting (aligned to +/- strand):  ref base A (10/18);  new base G (113/137);  total (123/155)
Fisher's exact test for biased strand distribution p-value = 4.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.52e-01

Only 100 of 278 total aligned reads displayed.

CAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGG  >  NC_000913/2894676‑2894857
                                                                                          |                                                                                           
cAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGt                                                                                           <  1:3875862/93‑1 (MQ=255)
cAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGt                                                                                           <  2:6093636/93‑1 (MQ=255)
cAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGt                                                                                           >  2:322452/1‑93 (MQ=255)
 aGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTg                                                                                          >  2:7259992/1‑93 (MQ=255)
 aGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTg                                                                                          >  1:5934821/1‑93 (MQ=255)
 aGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTg                                                                                          <  1:386235/93‑1 (MQ=255)
  ggAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTgg                                                                                         >  1:2010584/1‑93 (MQ=255)
  ggAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTgg                                                                                         >  1:444540/1‑93 (MQ=255)
   gAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGc                                                                                        >  2:730122/1‑93 (MQ=255)
    aGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCa                                                                                       >  1:3778124/1‑93 (MQ=255)
       aaTAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCaaaa                                                                                    >  2:4185527/1‑93 (MQ=255)
       aaTAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCaaaa                                                                                    >  2:6752576/1‑93 (MQ=255)
       aaTAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCaaaa                                                                                    >  1:6775829/1‑93 (MQ=255)
         tAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAAcc                                                                                  >  1:6500534/1‑93 (MQ=255)
           aGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGa                                                                                <  2:6192656/93‑1 (MQ=255)
               gACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGcc                                                                            <  1:728808/93‑1 (MQ=255)
               gACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGcc                                                                            >  1:1567151/1‑93 (MQ=255)
                aCTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGccc                                                                           >  1:11161/1‑93 (MQ=255)
                 cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCa                                                                          <  1:4526761/93‑1 (MQ=255)
                 cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCa                                                                          >  1:6209631/1‑93 (MQ=255)
                 cTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGAGGCAAAACCGACGCCCa                                                                          >  1:4177056/1‑93 (MQ=255)
                  ttGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCag                                                                         >  1:800871/1‑93 (MQ=255)
                   tGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagc                                                                        <  1:1471813/93‑1 (MQ=255)
                    gCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcg                                                                       <  1:4410320/93‑1 (MQ=255)
                     cATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcga                                                                      <  2:3064437/93‑1 (MQ=255)
                     cATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcga                                                                      <  1:3384279/93‑1 (MQ=255)
                      aTTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcgag                                                                     >  1:5156628/1‑93 (MQ=255)
                      aTTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCagcgag                                                                     >  2:1431558/1‑93 (MQ=255)
                       ttCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcgagc                                                                    >  2:4479254/1‑93 (MQ=255)
                       ttCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcgagc                                                                    >  2:6586160/1‑93 (MQ=255)
                       ttCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCagcgagc                                                                    <  2:4574298/93‑1 (MQ=255)
                       ttCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCagcgagc                                                                    <  1:3281623/93‑1 (MQ=255)
                         ccccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAgcgagcga                                                                  <  1:6532679/93‑1 (MQ=255)
                          cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGaa                                                                 <  1:3445040/93‑1 (MQ=255)
                          cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGaa                                                                 <  2:3372769/93‑1 (MQ=255)
                          cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGaa                                                                 <  2:6390046/93‑1 (MQ=255)
                          cccACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGaa                                                                 >  2:6877470/1‑93 (MQ=255)
                            cACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATg                                                               >  1:7413760/1‑93 (MQ=255)
                            cACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATg                                                               <  2:6811026/93‑1 (MQ=255)
                            cACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATg                                                               >  2:2200430/1‑93 (MQ=255)
                             aCTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGt                                                              >  2:6971363/1‑93 (MQ=255)
                              cTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTc                                                             >  1:2885966/1‑93 (MQ=255)
                              cTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTc                                                             <  1:1732417/93‑1 (MQ=255)
                              cTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTc                                                             <  1:4071278/93‑1 (MQ=255)
                              cTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTc                                                             <  2:738531/93‑1 (MQ=255)
                               tGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCa                                                            <  1:4967462/93‑1 (MQ=255)
                               tGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCa                                                            >  1:2103709/1‑93 (MQ=255)
                               tGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCa                                                            <  1:7001355/93‑1 (MQ=255)
                                 cgcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGt                                                          <  1:2395897/93‑1 (MQ=255)
                                 cgcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGt                                                          <  2:6307908/93‑1 (MQ=255)
                                  gcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTa                                                         >  1:3567464/1‑93 (MQ=255)
                                  gcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTa                                                         <  2:2005666/93‑1 (MQ=255)
                                  gcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTa                                                         <  1:5877764/93‑1 (MQ=255)
                                  gcCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTa                                                         <  1:7301190/93‑1 (MQ=255)
                                   ccAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAg                                                        <  1:4668340/93‑1 (MQ=255)
                                   ccAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAg                                                        >  2:6561557/1‑93 (MQ=255)
                                    cAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTatg                                                       >  2:4830205/1‑91 (MQ=255)
                                    cAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAgg                                                       <  1:5291039/93‑1 (MQ=255)
                                    cAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAgg                                                       >  2:2938102/1‑93 (MQ=255)
                                    cAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAgg                                                       >  2:2644027/1‑93 (MQ=255)
                                     aGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGa                                                      >  1:5042036/1‑93 (MQ=255)
                                         cccACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAAc                                                  <  2:3684526/93‑1 (MQ=255)
                                           cACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACtt                                                >  2:257882/1‑93 (MQ=255)
                                            aCGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACttt                                               <  1:4784587/93‑1 (MQ=255)
                                             cGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTc                                              >  2:1313315/1‑93 (MQ=255)
                                             cGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTc                                              <  2:3754381/93‑1 (MQ=255)
                                              ggCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTcc                                             <  1:1255876/93‑1 (MQ=255)
                                                 agcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCa                                          >  2:4625951/1‑93 (MQ=255)
                                                 agcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCa                                          <  1:3698001/93‑1 (MQ=255)
                                                  gcagGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAg                                         <  2:6614919/93‑1 (MQ=255)
                                                    agGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGc                                       >  1:4598849/1‑93 (MQ=255)
                                                     ggCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCa                                      >  2:4526455/1‑93 (MQ=255)
                                                      gCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCaa                                     <  2:3563663/93‑1 (MQ=255)
                                                         aGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAAt                                  <  2:2890200/93‑1 (MQ=255)
                                                         aGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTAGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAAt                                  <  2:3797956/93‑1 (MQ=255)
                                                           tACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGc                                >  1:6087665/1‑93 (MQ=255)
                                                            aCTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGcc                               >  1:5534002/1‑93 (MQ=255)
                                                            aCTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGcc                               >  2:6534339/1‑93 (MQ=255)
                                                               tACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCccac                            >  1:4386779/1‑93 (MQ=255)
                                                               tACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCccac                            >  2:108162/1‑93 (MQ=255)
                                                                aCCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCccacc                           <  2:5536967/93‑1 (MQ=255)
                                                                aCCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCccacc                           <  2:1212614/93‑1 (MQ=255)
                                                                aCCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCccacc                           <  1:1327970/93‑1 (MQ=255)
                                                                 ccgccgCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCccacca                          <  2:5649873/93‑1 (MQ=255)
                                                                   gccgcGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGa                        <  1:104215/93‑1 (MQ=255)
                                                                   gccgcGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGa                        <  2:2309824/93‑1 (MQ=255)
                                                                   gccgcGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGCCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGa                        >  2:7088844/1‑93 (MQ=255)
                                                                    ccgcGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGAt                       >  1:6650894/1‑93 (MQ=255)
                                                                         ccAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactg                  >  2:1520083/1‑93 (MQ=255)
                                                                         ccAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactg                  >  1:5433899/1‑93 (MQ=255)
                                                                          cAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactga                 <  2:5278693/93‑1 (MQ=255)
                                                                           aaGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactgac                >  2:509446/1‑93 (MQ=255)
                                                                            aGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactgact               <  1:2916164/93‑1 (MQ=255)
                                                                            aGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactgact               <  1:1664336/93‑1 (MQ=255)
                                                                             gTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTactgactg              >  1:524709/1‑93 (MQ=255)
                                                                              tCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGc             <  2:1681651/93‑1 (MQ=255)
                                                                                gACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCg           >  1:2700246/1‑93 (MQ=255)
                                                                                    cATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAt       <  1:2783274/93‑1 (MQ=255)
                                                                                     aTGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGGAAtg      >  1:603473/1‑93 (MQ=255)
                                                                                      tGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAtgg     >  1:1484210/1‑93 (MQ=255)
                                                                                          |                                                                                           
CAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGG  >  NC_000913/2894676‑2894857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTG  >  NC_000913/2894673‑2894859
                                                                                             |                                                                                             
CGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCG                                                                                               >  SRR4302542.6013587/1‑94 (MQ=60)
 GCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGG                                                                                              <  SRR4302542.4860441/94‑1 (MQ=60)
  CCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGT                                                                                             <  SRR4302542.4599843/94‑1 (MQ=60)
   CAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTG                                                                                            >  SRR4302542.5992317/1‑94 (MQ=60)
   CAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTG                                                                                            <  SRR4302542.3914150/94‑1 (MQ=60)
   CAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTG                                                                                            <  SRR4302542.1457656/94‑1 (MQ=60)
    AGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGG                                                                                           >  SRR4302542.2027949/1‑94 (MQ=60)
    AGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGG                                                                                           <  SRR4302542.389587/94‑1 (MQ=60)
    AGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGG                                                                                           <  SRR4302542.2198303/94‑1 (MQ=60)
    AGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGG                                                                                           >  SRR4302542.448388/1‑94 (MQ=60)
     GGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGC                                                                                          >  SRR4302542.443730/1‑94 (MQ=60)
      GAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCA                                                                                         >  SRR4302542.748206/1‑94 (MQ=60)
      GAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCA                                                                                         >  SRR4302542.3815504/1‑94 (MQ=60)
       AGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAA                                                                                        <  SRR4302542.4102235/94‑1 (MQ=60)
         CAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAA                                                                                      >  SRR4302542.3404052/1‑94 (MQ=60)
         CAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAA                                                                                      >  SRR4302542.6842486/1‑94 (MQ=60)
          AATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAAC                                                                                     <  SRR4302542.2752870/94‑1 (MQ=60)
          AATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAAC                                                                                     <  SRR4302542.4940874/94‑1 (MQ=60)
          AATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAAC                                                                                     >  SRR4302542.2612938/1‑94 (MQ=60)
           ATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACC                                                                                    >  SRR4302542.6564601/1‑94 (MQ=60)
           ATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACC                                                                                    >  SRR4302542.5563008/1‑94 (MQ=60)
           ATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACC                                                                                    >  SRR4302542.610599/1‑94 (MQ=60)
            TAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCG                                                                                   <  SRR4302542.5409870/94‑1 (MQ=60)
             AAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGA                                                                                  >  SRR4302542.2148933/1‑94 (MQ=60)
              AGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGAC                                                                                 <  SRR4302542.6813595/94‑1 (MQ=60)
              AGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGAC                                                                                 <  SRR4302542.3274037/94‑1 (MQ=60)
                 TGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCC                                                                              >  SRR4302542.1580682/1‑94 (MQ=60)
                  GACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCC                                                                             >  SRR4302542.11258/1‑94 (MQ=60)
                  GACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCC                                                                             <  SRR4302542.735094/94‑1 (MQ=60)
                   ACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCA                                                                            >  SRR4302542.6270815/1‑94 (MQ=60)
                   ACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCA                                                                            >  SRR4302542.4673252/1‑94 (MQ=60)
                   ACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGAGGCAAAACCGACGCCCA                                                                            >  SRR4302542.4218243/1‑94 (MQ=60)
                    CTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAG                                                                           <  SRR4302542.3496955/94‑1 (MQ=60)
                    CTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAG                                                                           <  SRR4302542.5309772/94‑1 (MQ=60)
                    CTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAG                                                                           >  SRR4302542.5226526/1‑94 (MQ=60)
                    CTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAG                                                                           >  SRR4302542.807758/1‑94 (MQ=60)
                    CTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAG                                                                           <  SRR4302542.4571104/94‑1 (MQ=60)
                      TGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCG                                                                         >  SRR4302542.6069648/1‑94 (MQ=60)
                      TGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCG                                                                         <  SRR4302542.1484521/94‑1 (MQ=60)
                      TGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCG                                                                         <  SRR4302542.1325004/94‑1 (MQ=60)
                       GCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGA                                                                        <  SRR4302542.4453629/94‑1 (MQ=60)
                       GCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGA                                                                        >  SRR4302542.4349887/1‑94 (MQ=60)
                        CATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAG                                                                       <  SRR4302542.3813717/94‑1 (MQ=60)
                        CATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAG                                                                       >  SRR4302542.5206741/1‑94 (MQ=60)
                        CATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAG                                                                       <  SRR4302542.3416060/94‑1 (MQ=60)
                        CATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGACAAAACCGACGCCCAGCGAG                                                                       <  SRR4302542.1954254/94‑1 (MQ=60)
                         ATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGC                                                                      <  SRR4302542.6177631/94‑1 (MQ=60)
                          TTCCCCACTGCGCCAGCGCCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCG                                                                     <  SRR4302542.1275970/94‑1 (MQ=60)
                          TTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCG                                                                     <  SRR4302542.3312579/94‑1 (MQ=60)
                            CCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAA                                                                   <  SRR4302542.6597065/94‑1 (MQ=60)
                             CCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAAT                                                                  >  SRR4302542.142362/1‑94 (MQ=60)
                             CCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAAT                                                                  >  SRR4302542.2506222/1‑94 (MQ=60)
                             CCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAAT                                                                  >  SRR4302542.5357817/1‑94 (MQ=60)
                             CCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAAT                                                                  <  SRR4302542.3477284/94‑1 (MQ=60)
                             CCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAAT                                                                  <  SRR4302542.3907183/94‑1 (MQ=60)
                             CCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAAT                                                                  <  SRR4302542.5191619/94‑1 (MQ=60)
                              CCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATG                                                                 >  SRR4302542.7486309/1‑94 (MQ=60)
                               CACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGT                                                                >  SRR4302542.1492327/1‑94 (MQ=60)
                                ACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTC                                                               <  SRR4302542.2807481/94‑1 (MQ=60)
                                ACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTC                                                               >  SRR4302542.2913679/1‑94 (MQ=60)
                                 CTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCA                                                              <  SRR4302542.4616397/94‑1 (MQ=60)
                                 CTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCA                                                              <  SRR4302542.1747452/94‑1 (MQ=60)
                                 CTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCA                                                              <  SRR4302542.4111423/94‑1 (MQ=60)
                                 CTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCA                                                              >  SRR4302542.2121865/1‑94 (MQ=60)
                                  TGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAG                                                             <  SRR4302542.7070130/94‑1 (MQ=60)
                                  TGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAG                                                             <  SRR4302542.5015694/94‑1 (MQ=60)
                                  TGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAG                                                             >  SRR4302542.4119874/1‑94 (MQ=60)
                                    CGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTA                                                           <  SRR4302542.2418975/94‑1 (MQ=60)
                                    CGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTA                                                           >  SRR4302542.4383859/1‑94 (MQ=60)
                                    CGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTA                                                           >  SRR4302542.3600765/1‑94 (MQ=60)
                                     GCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAG                                                          <  SRR4302542.5934743/94‑1 (MQ=60)
                                     GCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAG                                                          <  SRR4302542.7372731/94‑1 (MQ=60)
                                      CCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG                                                         <  SRR4302542.3416368/94‑1 (MQ=60)
                                      CCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG                                                         <  SRR4302542.4591420/94‑1 (MQ=60)
                                      CCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGG                                                         <  SRR4302542.4713974/94‑1 (MQ=60)
                                       CAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGA                                                        <  SRR4302542.5342463/94‑1 (MQ=60)
                                       CAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGA                                                        >  SRR4302542.5090976/1‑94 (MQ=60)
                                         GCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAA                                                      >  SRR4302542.1733085/1‑94 (MQ=60)
                                         GCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAA                                                      <  SRR4302542.2069044/94‑1 (MQ=60)
                                           ACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAAC                                                    >  SRR4302542.4720363/1‑94 (MQ=60)
                                           ACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGGGGCAAAACCGACGCCCAGCGAGCGAACGACAGTAGGAAAAC                                                    >  SRR4302542.7243406/1‑94 (MQ=60)
                                           ACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAAC                                                    <  SRR4302542.5742301/94‑1 (MQ=60)
                                             CCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTT                                                  >  SRR4302542.6439194/1‑94 (MQ=60)
                                              CACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTT                                                 >  SRR4302542.4453307/1‑94 (MQ=60)
                                               ACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTC                                                >  SRR4302542.5002365/1‑94 (MQ=60)
                                               ACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTC                                                <  SRR4302542.4831221/94‑1 (MQ=60)
                                                CGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCC                                               <  SRR4302542.1156503/94‑1 (MQ=60)
                                                CGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCC                                               <  SRR4302542.3733490/94‑1 (MQ=60)
                                                 GGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCG                                              <  SRR4302542.1266677/94‑1 (MQ=60)
                                                 GGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCG                                              <  SRR4302542.4481132/94‑1 (MQ=60)
                                                 GGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCG                                              <  SRR4302542.656850/94‑1 (MQ=60)
                                                 GGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCG                                              <  SRR4302542.7587075/94‑1 (MQ=60)
                                                 GGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCG                                              <  SRR4302542.5723616/94‑1 (MQ=60)
                                                    AGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAG                                           <  SRR4302542.3734590/94‑1 (MQ=60)
                                                    AGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAG                                           <  SRR4302542.2938809/94‑1 (MQ=60)
                                                    AGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAG                                           <  SRR4302542.3844436/94‑1 (MQ=60)
                                                    AGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAG                                           <  SRR4302542.5125927/94‑1 (MQ=60)
                                                     GCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGG                                          <  SRR4302542.548838/94‑1 (MQ=60)
                                                      CAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGC                                         >  SRR4302542.4643811/1‑94 (MQ=60)
                                                         GCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAA                                      <  SRR4302542.3431752/94‑1 (MQ=60)
                                                          CCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCTGCAGGCAAAA                                     <  SRR4302542.2828687/94‑1 (MQ=60)
                                                           CAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAAT                                    >  SRR4302542.6696153/1‑94 (MQ=60)
                                                           CAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAAT                                    >  SRR4302542.5066333/1‑94 (MQ=60)
                                                            AGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATG                                   <  SRR4302542.5984751/94‑1 (MQ=60)
                                                            AGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATG                                   <  SRR4302542.1598048/94‑1 (MQ=60)
                                                             GTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGC                                  >  SRR4302542.6146606/1‑94 (MQ=60)
                                                             GTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGC                                  >  SRR4302542.4506183/1‑94 (MQ=60)
                                                              TACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCC                                 >  SRR4302542.5587791/1‑94 (MQ=60)
                                                                CTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCA                               <  SRR4302542.6761697/94‑1 (MQ=60)
                                                                CTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCA                               >  SRR4302542.3017344/1‑94 (MQ=60)
                                                                 TTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCAC                              >  SRR4302542.4429817/1‑94 (MQ=60)
                                                                  TACCGGCGCGCCAAGTCCACTTATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTTAGTAGGAAAACTTTCCGCAGGCAAAAAGCCCACC                             <  SRR4302542.3712201/94‑1 (MQ=60)
                                                                  TACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACC                             >  SRR4302542.6482065/1‑94 (MQ=60)
                                                                  TACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACC                             <  SRR4302542.1880754/94‑1 (MQ=60)
                                                                  TACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACC                             <  SRR4302542.469009/94‑1 (MQ=60)
                                                                   ACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCA                            <  SRR4302542.1339409/94‑1 (MQ=60)
                                                                     CGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGA                          >  SRR4302542.5028179/1‑94 (MQ=60)
                                                                      GCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGAT                         <  SRR4302542.105076/94‑1 (MQ=60)
                                                                      GCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGAT                         >  SRR4302542.6716436/1‑94 (MQ=60)
                                                                        CGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTA                       >  SRR4302542.7403852/1‑94 (MQ=60)
                                                                        CGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTA                       >  SRR4302542.6047929/1‑94 (MQ=60)
                                                                          CGCCAGGTTGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATG‑CCACCAGATTACTG                    <  SRR4302542.1525078/94‑1 (MQ=60)
                                                                          CGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACT                     >  SRR4302542.6922990/1‑94 (MQ=60)
                                                                           GCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTG                    >  SRR4302542.4521232/1‑94 (MQ=60)
                                                                           GCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTG                    >  SRR4302542.5486697/1‑94 (MQ=60)
                                                                           GCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTG                    <  SRR4302542.1105210/94‑1 (MQ=60)
                                                                             CAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGAC                  <  SRR4302542.2921663/94‑1 (MQ=60)
                                                                              AAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACT                 <  SRR4302542.4125325/94‑1 (MQ=60)
                                                                               AGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTG                >  SRR4302542.7416897/1‑94 (MQ=60)
                                                                               AGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTG                >  SRR4302542.529242/1‑94 (MQ=60)
                                                                               AGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTG                <  SRR4302542.1678713/94‑1 (MQ=60)
                                                                               AGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTG                <  SRR4302542.2944125/94‑1 (MQ=60)
                                                                                GTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAGCTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGC               <  SRR4302542.3888320/94‑1 (MQ=60)
                                                                                GTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGC               >  SRR4302542.664293/1‑94 (MQ=60)
                                                                                 TCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCC              <  SRR4302542.5221249/94‑1 (MQ=60)
                                                                                  CGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCG             >  SRR4302542.2726295/1‑94 (MQ=60)
                                                                                   GACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGA            <  SRR4302542.1625180/94‑1 (MQ=60)
                                                                                   GACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGA            <  SRR4302542.1695545/94‑1 (MQ=60)
                                                                                     CTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAA          >  SRR4302542.619240/1‑94 (MQ=60)
                                                                                      TCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAT         >  SRR4302542.3753944/1‑94 (MQ=60)
                                                                                      TCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAAT         <  SRR4302542.4094543/94‑1 (MQ=60)
                                                                                       CATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGGAATG        >  SRR4302542.608671/1‑94 (MQ=60)
                                                                                       CATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATG        <  SRR4302542.2810075/94‑1 (MQ=60)
                                                                                       CATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATG        <  SRR4302542.6143950/94‑1 (MQ=60)
                                                                                       CATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATG        >  SRR4302542.3331467/1‑94 (MQ=60)
                                                                                        ATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGG       >  SRR4302542.1497018/1‑94 (MQ=60)
                                                                                        ATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGG       <  SRR4302542.7367639/94‑1 (MQ=60)
                                                                                        ATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGG       >  SRR4302542.1575372/1‑94 (MQ=60)
                                                                                         TGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGT      <  SRR4302542.7097695/94‑1 (MQ=60)
                                                                                           GCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGG    <  SRR4302542.44441/94‑1 (MQ=60)
                                                                                           GCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGG    <  SRR4302542.1993334/94‑1 (MQ=60)
                                                                                           GCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGG    >  SRR4302542.7584962/1‑94 (MQ=60)
                                                                                           GCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGG    <  SRR4302542.122480/94‑1 (MQ=60)
                                                                                            CAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGT   <  SRR4302542.7055118/94‑1 (MQ=60)
                                                                                             GGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTG  <  SRR4302542.4355078/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTG  >  NC_000913/2894673‑2894859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑