Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,107,469 +C intergenic (‑296/‑101) b2965 ← / → yqgA ornithine decarboxylase isozyme/putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,107,4691.C99.7% 992.4 / ‑4.9 299intergenic (‑296/‑101)b2965/yqgAornithine decarboxylase isozyme/putative transport protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base C (133/165);  minor base A (1/0);  total (134/165)
Fisher's exact test for biased strand distribution p-value = 4.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.03e-01

Only 100 of 316 total aligned reads displayed.

GAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGC  >  NC_000913/3107377‑3107555
                                                                                             |                                                                                      
gAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCttt                                                                                         >  2:837027/1‑93 (MQ=255)
gAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCttt                                                                                         <  1:1513944/93‑1 (MQ=255)
   aCGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCtttcgc                                                                                      >  1:3674192/1‑90 (MQ=255)
   aCGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCtttcgc                                                                                      <  2:483080/93‑4 (MQ=255)
   aCGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCtttcgc                                                                                      <  1:2013816/93‑4 (MQ=255)
      gCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTaa                                                                                   >  2:2505457/1‑93 (MQ=255)
      gCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTaa                                                                                   <  1:5925997/93‑1 (MQ=255)
       cGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTaaa                                                                                  >  1:5325510/1‑93 (MQ=255)
       cGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTaaa                                                                                  <  1:707815/93‑1 (MQ=255)
         aTAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGc                                                                                <  1:2841463/93‑1 (MQ=255)
           aaGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGt                                                                              <  1:2619097/93‑1 (MQ=255)
            aGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTg                                                                             <  1:5032187/93‑1 (MQ=255)
            aGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTg                                                                             >  1:4370035/1‑93 (MQ=255)
             gCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGc                                                                            >  2:356389/1‑93 (MQ=255)
               gagagaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCaa                                                                          <  1:6221394/93‑1 (MQ=255)
               gagagaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCaa                                                                          >  1:1786400/1‑93 (MQ=255)
                agagaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAg                                                                         >  1:5291346/1‑93 (MQ=255)
                agagaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAg                                                                         >  2:5094026/1‑93 (MQ=255)
                 gagaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGc                                                                        >  1:5491467/1‑93 (MQ=255)
                  agaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGcc                                                                       <  1:742750/93‑1 (MQ=255)
                   gaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCa                                                                      <  1:754677/93‑1 (MQ=255)
                    aaTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAg                                                                     >  1:5734935/1‑93 (MQ=255)
                    aaTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAg                                                                     <  1:3477942/93‑1 (MQ=255)
                     aTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAgg                                                                    <  2:1889196/93‑1 (MQ=255)
                     aTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAgg                                                                    <  1:3106481/93‑1 (MQ=255)
                      tGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGa                                                                   <  1:1929734/93‑1 (MQ=255)
                       gTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGAc                                                                  <  2:5445294/93‑1 (MQ=255)
                       gTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGAc                                                                  >  2:6895005/1‑93 (MQ=255)
                       gTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGAc                                                                  <  2:707375/93‑1 (MQ=255)
                        tAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACt                                                                 <  2:4364468/93‑1 (MQ=255)
                         aaGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACtt                                                                <  1:6124467/93‑1 (MQ=255)
                          aGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACttt                                                               <  1:2991914/93‑1 (MQ=255)
                           ggAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTg                                                              >  2:1099951/1‑93 (MQ=255)
                              gaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGa                                                           >  2:3105122/1‑93 (MQ=255)
                                   cGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaa                                                      <  1:5438071/93‑1 (MQ=255)
                                    gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaac                                                     <  1:3743065/93‑1 (MQ=255)
                                     tGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca                                                    <  2:144453/93‑1 (MQ=255)
                                     tGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca                                                    <  2:733593/93‑1 (MQ=255)
                                     tGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca                                                    <  1:6428573/93‑1 (MQ=255)
                                       cATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAg                                                  >  2:3964228/1‑93 (MQ=255)
                                       cATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAg                                                  >  1:2310190/1‑93 (MQ=255)
                                        aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGc                                                 <  1:1655081/93‑1 (MQ=255)
                                        aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGc                                                 >  2:6040388/1‑93 (MQ=255)
                                        aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGc                                                 <  2:4250278/93‑1 (MQ=255)
                                         tCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGcc                                                >  1:1449466/1‑93 (MQ=255)
                                           gggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAt                                              >  1:537587/1‑93 (MQ=255)
                                            ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATc                                             <  2:6834596/93‑1 (MQ=255)
                                            ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATc                                             >  1:6056791/1‑93 (MQ=255)
                                            ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATc                                             >  1:1059492/1‑93 (MQ=255)
                                            ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATc                                             >  2:1210512/1‑93 (MQ=255)
                                             gCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCg                                            <  2:716219/93‑1 (MQ=255)
                                               aaaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAc                                          <  1:4905638/93‑1 (MQ=255)
                                                  cTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc                                       <  2:6288470/93‑1 (MQ=255)
                                                   tCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCa                                      >  2:7230504/1‑93 (MQ=255)
                                                      gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCa                                   >  1:4271396/1‑93 (MQ=255)
                                                      gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCa                                   <  2:2623057/93‑1 (MQ=255)
                                                       tACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCaa                                  <  1:246378/93‑1 (MQ=255)
                                                        aCAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCaaa                                 <  2:2773185/93‑1 (MQ=255)
                                                         cAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAc                                <  2:2987123/93‑1 (MQ=255)
                                                         cAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAc                                <  1:1273069/93‑1 (MQ=255)
                                                          agagagGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACg                               >  1:2118490/1‑93 (MQ=255)
                                                          agagagGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACg                               <  1:4965995/93‑1 (MQ=255)
                                                          agaaagGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACg                               >  1:6976865/1‑93 (MQ=255)
                                                           gagagGAGAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg                              >  1:3173955/1‑93 (MQ=255)
                                                             gaggagAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTc                            >  2:813624/1‑93 (MQ=255)
                                                             gaggagAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTc                            <  1:4830772/93‑1 (MQ=255)
                                                              aggagAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCa                           <  2:2954856/93‑1 (MQ=255)
                                                               ggagAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat                          >  2:1348547/1‑93 (MQ=255)
                                                               ggagAAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat                          <  1:4052154/93‑1 (MQ=255)
                                                                gagaAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCata                         >  2:2073799/1‑93 (MQ=255)
                                                                gagaAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCata                         >  2:6677247/1‑93 (MQ=255)
                                                                gagaAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCata                         <  1:5772215/93‑1 (MQ=255)
                                                                 agaAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataa                        <  2:5597747/93‑1 (MQ=255)
                                                                 agaAAATTCGCGAAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataa                        <  1:6807697/93‑1 (MQ=255)
                                                                  gaAAATTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataat                       <  2:5841912/93‑1 (MQ=255)
                                                                   aaaaTTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataata                      >  1:1355957/1‑93 (MQ=255)
                                                                    aaaTTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAtaataa                     <  2:6230857/93‑1 (MQ=255)
                                                                     aaTTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAg                    <  2:1735737/93‑1 (MQ=255)
                                                                     aaTTCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAg                    <  2:7283627/93‑1 (MQ=255)
                                                                       ttCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGaa                  >  1:3963385/1‑93 (MQ=255)
                                                                       ttCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGaa                  <  2:456078/93‑1 (MQ=255)
                                                                        tCGCGCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGaaa                 <  1:986473/93‑1 (MQ=255)
                                                                         cgcgCAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGaaaa                <  1:5595124/93‑1 (MQ=255)
                                                                          gcgcAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAAt               <  1:3394938/93‑1 (MQ=255)
                                                                           cgcAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATc              <  2:6750135/93‑1 (MQ=255)
                                                                            gcAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCa             <  1:6779250/93‑1 (MQ=255)
                                                                             cAATCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCaa            >  1:3943778/1‑93 (MQ=255)
                                                                               aTCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAAc          >  1:865362/1‑93 (MQ=255)
                                                                               aTCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAAc          <  1:3866820/93‑1 (MQ=255)
                                                                               aTCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAAc          >  2:3347460/1‑93 (MQ=255)
                                                                                tCATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACa         >  2:6983527/1‑93 (MQ=255)
                                                                                 cATGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACaa        <  2:3517099/93‑1 (MQ=255)
                                                                                  aTGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAGTAAGAAAATCAAACAAt       <  1:4622694/93‑1 (MQ=255)
                                                                                  aTGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAAt       <  1:7247056/93‑1 (MQ=255)
                                                                                  aTGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAAt       >  2:5749650/1‑93 (MQ=255)
                                                                                   tGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATa      <  2:2254989/93‑1 (MQ=255)
                                                                                   tGGCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATa      <  2:3747591/93‑1 (MQ=255)
                                                                                     gCACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACa    <  1:6679680/93‑1 (MQ=255)
                                                                                      cACCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAg   <  2:3666984/93‑1 (MQ=255)
                                                                                       aCCTTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGc  <  2:4972746/93‑1 (MQ=255)
                                                                                             |                                                                                      
GAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGC  >  NC_000913/3107377‑3107555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACAG  >  NC_000913/3107376‑3107561
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CGAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT                                                                                                <  SRR4302542.4731339/94‑1 (MQ=60)
 GAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT‑‑C                                                                                             >  SRR4302542.2357592/1‑94 (MQ=60)
 GAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT‑‑C                                                                                             <  SRR4302542.1527022/94‑1 (MQ=60)
  AAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTcg                                                                                              <  SRR4302542.316163/94‑3 (MQ=60)
  AAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTcg                                                                                              <  SRR4302542.603359/94‑3 (MQ=60)
   AACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTcgc                                                                                             >  SRR4302542.323314/1‑91 (MQ=60)
   AACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTcgc                                                                                             >  SRR4302542.3709753/1‑91 (MQ=60)
   AACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTcgc                                                                                             >  SRR4302542.3770069/1‑91 (MQ=60)
    ACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCT                                                                                           <  SRR4302542.2031204/94‑1 (MQ=60)
    ACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCT                                                                                           >  SRR4302542.3841111/1‑94 (MQ=60)
     CGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTA                                                                                          >  SRR4302542.5776917/1‑94 (MQ=60)
      GGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAA                                                                                         <  SRR4302542.6144730/94‑1 (MQ=60)
       GCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAA                                                                                        <  SRR4302542.5983421/94‑1 (MQ=60)
       GCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAA                                                                                        >  SRR4302542.6117054/1‑94 (MQ=60)
       GCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAA                                                                                        >  SRR4302542.5377246/1‑94 (MQ=60)
        CGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAG                                                                                       <  SRR4302542.713932/94‑1 (MQ=60)
         GATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGC                                                                                      <  SRR4302542.7559872/94‑1 (MQ=60)
         GATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGC                                                                                      >  SRR4302542.4560419/1‑94 (MQ=60)
          ATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCG                                                                                     >  SRR4302542.316225/1‑94 (MQ=60)
          ATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCG                                                                                     <  SRR4302542.2868761/94‑1 (MQ=60)
           TAAGCGAGAGAATGTAAGGAGATGGCGTTCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGT                                                                                    >  SRR4302542.5716370/1‑94 (MQ=60)
            AAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTG                                                                                   >  SRR4302542.4412937/1‑94 (MQ=60)
            AAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTG                                                                                   <  SRR4302542.2644407/94‑1 (MQ=60)
            AAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTG                                                                                   <  SRR4302542.2075456/94‑1 (MQ=60)
             AGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGC                                                                                  <  SRR4302542.5081036/94‑1 (MQ=60)
              GCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCA                                                                                 <  SRR4302542.3887071/94‑1 (MQ=60)
              GCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCA                                                                                 <  SRR4302542.7264329/94‑1 (MQ=60)
               CGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAA                                                                                >  SRR4302542.1801903/1‑94 (MQ=60)
                GAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAG                                                                               <  SRR4302542.4900476/94‑1 (MQ=60)
                GAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAG                                                                               >  SRR4302542.5342772/1‑94 (MQ=60)
                GAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAG                                                                               <  SRR4302542.6282664/94‑1 (MQ=60)
                 AGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGC                                                                              >  SRR4302542.5544810/1‑94 (MQ=60)
                  GAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCC                                                                             >  SRR4302542.5343696/1‑94 (MQ=60)
                  GAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCC                                                                             <  SRR4302542.5550633/94‑1 (MQ=60)
                   AGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCA                                                                            <  SRR4302542.749191/94‑1 (MQ=60)
                   AGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCA                                                                            <  SRR4302542.3347195/94‑1 (MQ=60)
                   AGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCA                                                                            >  SRR4302542.7559708/1‑94 (MQ=60)
                   AGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCA                                                                            >  SRR4302542.7268702/1‑94 (MQ=60)
                    GAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAG                                                                           >  SRR4302542.5790620/1‑94 (MQ=60)
                    GAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAG                                                                           <  SRR4302542.4342633/94‑1 (MQ=60)
                    GAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAG                                                                           <  SRR4302542.3996372/94‑1 (MQ=60)
                    GAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAG                                                                           <  SRR4302542.761207/94‑1 (MQ=60)
                     AATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCGATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGG                                                                          >  SRR4302542.674955/1‑94 (MQ=60)
                     AATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGG                                                                          <  SRR4302542.3510492/94‑1 (MQ=60)
                     AATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGG                                                                          >  SRR4302542.1313206/1‑94 (MQ=60)
                      ATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGA                                                                         >  SRR4302542.4671075/1‑94 (MQ=60)
                      ATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGA                                                                         <  SRR4302542.3136009/94‑1 (MQ=60)
                       TGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGAC                                                                        >  SRR4302542.5028178/1‑94 (MQ=60)
                       TGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGAC                                                                        <  SRR4302542.3907749/94‑1 (MQ=60)
                       TGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGAC                                                                        <  SRR4302542.1946400/94‑1 (MQ=60)
                       TGTAAGGAGATGGCGTGCATCGGGAAACCTCCGTACAAAGAGGAGAAAATTCGCGAAATC‑TTGCCCCTTTTCGCTAAAGCGTGCAAGCCAGGAC                                                                        <  SRR4302542.3719321/94‑1 (MQ=48)
                        GTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACT                                                                       <  SRR4302542.1547149/94‑1 (MQ=60)
                        GTAAGGAGATGGCGTGCATCGGCCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACT                                                                       >  SRR4302542.541552/1‑94 (MQ=60)
                          AAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTT                                                                     <  SRR4302542.1826969/94‑1 (MQ=60)
                          AAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTT                                                                     <  SRR4302542.6183727/94‑1 (MQ=60)
                          AAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTT                                                                     <  SRR4302542.5678380/94‑1 (MQ=60)
                           AGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGTGCATTCATGGAACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTG                                                                    >  SRR4302542.504337/1‑94 (MQ=60)
                           AGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTG                                                                    <  SRR4302542.3020545/94‑1 (MQ=60)
                           AGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTG                                                                    >  SRR4302542.6458047/1‑94 (MQ=60)
                            GGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGC                                                                   >  SRR4302542.5530667/1‑94 (MQ=60)
                              AGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGA                                                                 >  SRR4302542.6418362/1‑94 (MQ=60)
                                  GGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAA                                                             >  SRR4302542.6700990/1‑94 (MQ=60)
                                    CGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAAC                                                           <  SRR4302542.5490908/94‑1 (MQ=60)
                                    CGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAAC                                                           >  SRR4302542.7143046/1‑94 (MQ=60)
                                     GTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACA                                                          <  SRR4302542.827429/94‑1 (MQ=60)
                                     GTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACA                                                          <  SRR4302542.3780107/94‑1 (MQ=60)
                                     GTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACA                                                          <  SRR4302542.5179314/94‑1 (MQ=60)
                                      TGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGACCAAACAA                                                         <  SRR4302542.4220126/94‑1 (MQ=60)
                                      TGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAA                                                         >  SRR4302542.2210904/1‑94 (MQ=60)
                                      TGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAA                                                         <  SRR4302542.6869100/94‑1 (MQ=60)
                                      TGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAA                                                         <  SRR4302542.6491910/94‑1 (MQ=60)
                                      TGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAA                                                         >  SRR4302542.1823029/1‑94 (MQ=60)
                                      TGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAA                                                         <  SRR4302542.499913/94‑1 (MQ=60)
                                       GCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAG                                                        >  SRR4302542.2330026/1‑94 (MQ=60)
                                        CATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAGTCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGC                                                       >  SRR4302542.6269961/1‑94 (MQ=60)
                                        CATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGC                                                       >  SRR4302542.3122975/1‑94 (MQ=60)
                                        CATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGC                                                       >  SRR4302542.356884/1‑94 (MQ=60)
                                        CATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGC                                                       <  SRR4302542.7067678/94‑1 (MQ=60)
                                        CATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGC                                                       >  SRR4302542.1198378/1‑94 (MQ=60)
                                         ATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCC                                                      <  SRR4302542.1669379/94‑1 (MQ=60)
                                         ATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCC                                                      >  SRR4302542.1461974/1‑94 (MQ=60)
                                         ATCGGACAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCC                                                      >  SRR4302542.6072468/1‑94 (MQ=60)
                                          TCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCA                                                     <  SRR4302542.5794721/94‑1 (MQ=60)
                                           cggaaaacccCCGTACAGAGAGGAAAAAATTCGCGAAATCATGGCCCCTTTC‑GCAAAAGCGTGCAAGCCAGGACTTTGCAAACAAAAAAGCCAT                                                    <  SRR4302542.295843/84‑1 (MQ=51)
                                           CGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAT                                                    >  SRR4302542.542234/1‑94 (MQ=60)
                                            NNGCAAACTCCGTACAGAGGGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAACCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATC                                                   <  SRR4302542.2740652/94‑1 (MQ=60)
                                            GGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATC                                                   >  SRR4302542.1068599/1‑94 (MQ=60)
                                            GGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATC                                                   >  SRR4302542.6115418/1‑94 (MQ=60)
                                            GGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATC                                                   <  SRR4302542.991736/94‑1 (MQ=60)
                                             GGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCG                                                  <  SRR4302542.7152388/94‑1 (MQ=60)
                                             GGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCG                                                  <  SRR4302542.4479608/94‑1 (MQ=60)
                                               CAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCCCCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAC                                                <  SRR4302542.1395509/94‑1 (MQ=60)
                                               CAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAC                                                <  SRR4302542.5425909/94‑1 (MQ=60)
                                               CAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAC                                                <  SRR4302542.4405032/94‑1 (MQ=60)
                                               CAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAC                                                <  SRR4302542.4105168/94‑1 (MQ=60)
                                               CAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAC                                                <  SRR4302542.6186761/94‑1 (MQ=60)
                                               CAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAC                                                <  SRR4302542.2045539/94‑1 (MQ=60)
                                                AAACTCCGTACAGAGAGGAGAAAATTCGCGCATTCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACG                                               >  SRR4302542.1743216/1‑94 (MQ=60)
                                                AAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCCCCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACG                                               <  SRR4302542.4064915/94‑1 (MQ=60)
                                                AAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACG                                               >  SRR4302542.5516788/1‑94 (MQ=60)
                                                AAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACG                                               >  SRR4302542.3467958/1‑94 (MQ=60)
                                                AAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACG                                               <  SRR4302542.4953356/94‑1 (MQ=60)
                                                AAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACG                                               <  SRR4302542.1904709/94‑1 (MQ=60)
                                                 AACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGG                                              <  SRR4302542.59183/94‑1 (MQ=60)
                                                  ACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGC                                             <  SRR4302542.1522061/94‑1 (MQ=60)
                                                   CTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCA                                            >  SRR4302542.107780/1‑94 (MQ=60)
                                                      CGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCA                                         >  SRR4302542.4313423/1‑94 (MQ=60)
                                                      CGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTA‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACNN                                         >  SRR4302542.3439785/1‑94 (MQ=60)
                                                        TACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAA                                       <  SRR4302542.248487/94‑1 (MQ=60)
                                                         ACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAC                                      >  SRR4302542.2547280/1‑94 (MQ=60)
                                                         ACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAC                                      <  SRR4302542.6858805/94‑1 (MQ=60)
                                                          CAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACG                                     <  SRR4302542.1284004/94‑1 (MQ=60)
                                                          CAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACG                                     <  SRR4302542.3984130/94‑1 (MQ=60)
                                                          CAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACG                                     <  SRR4302542.4019806/94‑1 (MQ=60)
                                                          CAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACG                                     >  SRR4302542.2136773/1‑94 (MQ=60)
                                                          CAGAAAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACG                                     >  SRR4302542.7045390/1‑94 (MQ=60)
                                                           AGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGG                                    <  SRR4302542.5014215/94‑1 (MQ=60)
                                                           AGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGG                                    >  SRR4302542.3204050/1‑94 (MQ=60)
                                                           AGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGG                                    <  SRR4302542.5569040/94‑1 (MQ=60)
                                                           AGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGG                                    <  SRR4302542.5436616/94‑1 (MQ=60)
                                                           AGAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGG                                    >  SRR4302542.1475278/1‑94 (MQ=60)
                                                            GAGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGT                                   >  SRR4302542.5671536/1‑94 (MQ=60)
                                                             AGAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTC                                  >  SRR4302542.2985818/1‑94 (MQ=60)
                                                              GAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCA                                 <  SRR4302542.4877835/94‑1 (MQ=60)
                                                              GAGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCA                                 <  SRR4302542.7002133/94‑1 (MQ=60)
                                                               AGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAT                                >  SRR4302542.5375475/1‑94 (MQ=60)
                                                               AGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAT                                <  SRR4302542.1968094/94‑1 (MQ=60)
                                                               AGGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAT                                <  SRR4302542.4159052/94‑1 (MQ=60)
                                                                GGAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATA                               <  SRR4302542.4092117/94‑1 (MQ=60)
                                                                 GAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAA                              <  SRR4302542.2432104/94‑1 (MQ=60)
                                                                 GAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAA                              <  SRR4302542.5828241/94‑1 (MQ=60)
                                                                 GAGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAA                              <  SRR4302542.4949381/94‑1 (MQ=60)
                                                                  AGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAAT                             >  SRR4302542.7432882/1‑94 (MQ=60)
                                                                  AGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAAT                             <  SRR4302542.2828032/94‑1 (MQ=60)
                                                                  AGAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAAT                             >  SRR4302542.6121831/1‑94 (MQ=60)
                                                                  AGAAAATTCGCGAAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAAT                             <  SRR4302542.6874630/94‑1 (MQ=60)
                                                                  AAAAAATGCGCGCAATCATGGCCCCTTTC‑GCTAACGCGTGCAAGCCAGGAATTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAAT                             <  SRR4302542.5131498/94‑1 (MQ=60)
                                                                   GAAAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATA                            >  SRR4302542.1367667/1‑94 (MQ=60)
                                                                     AAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAG                          <  SRR4302542.3523157/94‑1 (MQ=60)
                                                                     AAATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAG                          >  SRR4302542.2950765/1‑94 (MQ=60)
                                                                       ATTCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAA                        >  SRR4302542.4002519/1‑94 (MQ=60)
                                                                         TCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAA                      <  SRR4302542.994974/94‑1 (MQ=60)
                                                                         TCGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAA                      <  SRR4302542.5941870/94‑1 (MQ=60)
                                                                          CGCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAAT                     <  SRR4302542.5649489/94‑1 (MQ=60)
                                                                           GCGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATC                    <  SRR4302542.3426790/94‑1 (MQ=60)
                                                                            CGCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCA                   >  SRR4302542.1413783/1‑94 (MQ=60)
                                                                             GCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAA                  >  SRR4302542.3982732/1‑94 (MQ=60)
                                                                             GCAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAA                  <  SRR4302542.6845935/94‑1 (MQ=60)
                                                                              CAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAA                 <  SRR4302542.844259/94‑1 (MQ=60)
                                                                              CAATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAA                 >  SRR4302542.4836456/1‑94 (MQ=60)
                                                                               AATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAAC                >  SRR4302542.872818/1‑94 (MQ=60)
                                                                                ATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACA               >  SRR4302542.5815992/1‑94 (MQ=60)
                                                                                ATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACA               >  SRR4302542.6777089/1‑94 (MQ=60)
                                                                                ATCATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACA               <  SRR4302542.3905037/94‑1 (MQ=60)
                                                                                  CATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAAT             >  SRR4302542.2677188/1‑94 (MQ=60)
                                                                                  CATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAAT             >  SRR4302542.6695593/1‑94 (MQ=60)
                                                                                   ATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAGTAAGAAAATCAAACAATA            <  SRR4302542.4667857/94‑1 (MQ=60)
                                                                                   ATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATA            <  SRR4302542.178980/94‑1 (MQ=60)
                                                                                   ATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATA            <  SRR4302542.2293647/94‑1 (MQ=60)
                                                                                   ATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATA            >  SRR4302542.3026162/1‑94 (MQ=60)
                                                                                   ATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATA            <  SRR4302542.7318116/94‑1 (MQ=60)
                                                                                   ATGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATA            >  SRR4302542.3572809/1‑94 (MQ=60)
                                                                                    TGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATAC           <  SRR4302542.7450851/94‑1 (MQ=60)
                                                                                    TGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATAC           <  SRR4302542.5210876/94‑1 (MQ=60)
                                                                                    TGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATAC           <  SRR4302542.7007238/94‑1 (MQ=60)
                                                                                    TGGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATAC           >  SRR4302542.3964947/1‑94 (MQ=60)
                                                                                     GGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACA          <  SRR4302542.944117/94‑1 (MQ=60)
                                                                                     GGCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACA          <  SRR4302542.6327087/94‑1 (MQ=60)
                                                                                      GCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAG         <  SRR4302542.6745487/94‑1 (MQ=60)
                                                                                      GCACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAG         <  SRR4302542.2542385/94‑1 (MQ=60)
                                                                                       CACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGC        <  SRR4302542.2005070/94‑1 (MQ=60)
                                                                                       CACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGC        >  SRR4302542.5461262/1‑94 (MQ=60)
                                                                                       CACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGC        >  SRR4302542.1599099/1‑94 (MQ=60)
                                                                                       CACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGC        >  SRR4302542.1295156/1‑94 (MQ=60)
                                                                                        ACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCT       >  SRR4302542.4647402/1‑94 (MQ=60)
                                                                                        ACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCT       >  SRR4302542.6258161/1‑94 (MQ=60)
                                                                                        ACCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCT       >  SRR4302542.878506/1‑94 (MQ=60)
                                                                                         CCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAactc      >  SRR4302542.4734588/1‑90 (MQ=60)
                                                                                         CCTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTA      <  SRR4302542.6602572/94‑1 (MQ=60)
                                                                                          CTTTC‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAA     <  SRR4302542.2324609/94‑1 (MQ=60)
                                                                                           TTC‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACA   >  SRR4302542.129111/1‑94 (MQ=60)
                                                                                           TTC‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACA   <  SRR4302542.6721921/94‑1 (MQ=60)
                                                                                           TTC‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACA   <  SRR4302542.3295790/94‑1 (MQ=60)
                                                                                            TC‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGTCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACAG  >  SRR4302542.6914340/1‑94 (MQ=60)
                                                                                            TC‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACAG  >  SRR4302542.2047321/1‑94 (MQ=60)
                                                                                            TC‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGACACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACAG  <  SRR4302542.4772859/94‑1 (MQ=60)
                                                                                             |                                                                                              
CGAAACGGCGATAAGCGAGAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACCTTT‑‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGAAAATCAAACAATACAGCTAACAG  >  NC_000913/3107376‑3107561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑