Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,190,239	G→A	D6N (GAC→AAC)	b3050 →	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,190,239	0	G	A	81.1%	668.3 / 115.5	270	D6N (GAC→AAC)	b3050	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base G (31/20); new base A (102/117); total (133/137)
Fisher's exact test for biased strand distribution p-value = 8.67e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01

Only 100 of 273 total aligned reads displayed.

TTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC  >  NC_000913/3190148‑3190331

   acacAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACta                                                                                          >  2:2647650/1‑93 (MQ=255)

    cacaGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACtat                                                                                         <  2:1879465/93‑1 (MQ=255)

     acaGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACtata                                                                                        >  1:7355152/1‑93 (MQ=255)

     acaGATAAATGTAAGCAAGCAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACtata                                                                                        >  1:3283823/1‑93 (MQ=255)

      caGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATaa                                                                                       <  1:1068279/93‑1 (MQ=255)

      caGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATaa                                                                                       <  1:2908568/93‑1 (MQ=255)

        gATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAaca                                                                                     <  2:3956978/93‑1 (MQ=255)

        gATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAaca                                                                                     <  2:1171192/93‑1 (MQ=255)

        gATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAaca                                                                                     >  2:2108310/1‑93 (MQ=255)

        gATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAaca                                                                                     <  1:1279000/93‑1 (MQ=255)

         aTAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAacac                                                                                    >  1:1766217/1‑93 (MQ=255)

          tAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACAcc                                                                                   <  1:5934170/93‑1 (MQ=255)

            aaTGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACAcccc                                                                                 >  2:774993/1‑93 (MQ=255)

            aaTGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACAcccc                                                                                 <  1:818892/93‑1 (MQ=255)

             aTGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCt                                                                                >  1:606874/1‑93 (MQ=255)

              tGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCtt                                                                               >  2:7374647/1‑93 (MQ=255)

               gTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTa                                                                              <  2:3876696/93‑1 (MQ=255)

               gTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTa                                                                              <  2:324542/93‑1 (MQ=255)

                tAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTAt                                                                             >  1:723370/1‑93 (MQ=255)

                 aaGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATc                                                                            <  1:3575962/93‑1 (MQ=255)

                    cAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCttt                                                                         <  2:7215884/93‑1 (MQ=255)

                     aaGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCtttt                                                                        >  2:3293686/1‑93 (MQ=255)

                      aGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTc                                                                       >  2:6190147/1‑93 (MQ=255)

                      aGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTc                                                                       >  1:2051553/1‑93 (MQ=255)

                        gAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGc                                                                     <  1:5619625/93‑1 (MQ=255)

                            cTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTAtt                                                                 >  1:730305/1‑93 (MQ=255)

                             tATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTAttt                                                                <  2:567668/93‑1 (MQ=255)

                             tATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTAttt                                                                >  1:3422082/1‑93 (MQ=255)

                             tATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTAttt                                                                <  2:1419673/93‑1 (MQ=255)

                             tATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTAttt                                                                >  1:5190673/1‑93 (MQ=255)

                             tATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTAttt                                                                >  2:3931269/1‑93 (MQ=255)

                              aTTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTc                                                               <  1:3021889/93‑1 (MQ=255)

                               ttACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTcc                                                              <  1:4854785/93‑1 (MQ=255)

                                tACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCt                                                             >  2:6631957/1‑93 (MQ=255)

                                tACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCt                                                             <  2:4715081/93‑1 (MQ=255)

                                 aCAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCtt                                                            <  1:2655765/93‑1 (MQ=255)

                                  cAAAGTAAATATTGCGTCACTAGATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCttt                                                           <  2:6905941/93‑1 (MQ=255)

                                  cAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCttt                                                           <  1:2616508/93‑1 (MQ=255)

                                  cAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCttt                                                           >  1:4650915/1‑93 (MQ=255)

                                  cAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCttt                                                           >  2:4706994/1‑93 (MQ=255)

                                   aaaGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTg                                                          >  2:6507107/1‑93 (MQ=255)

                                   aaaGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTACAACACCCCTTATCTTTTCGCTATTTCCTTTg                                                          >  2:2788531/1‑93 (MQ=255)

                                    aaGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGt                                                         <  2:5535130/93‑1 (MQ=255)

                                     aGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTa                                                        >  1:5205094/1‑93 (MQ=255)

                                     aGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTa                                                        <  2:1468542/93‑1 (MQ=255)

                                      gTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTAc                                                       >  2:6796502/1‑93 (MQ=255)

                                      gTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTAc                                                       <  2:2889088/93‑1 (MQ=255)

                                       tAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACt                                                      >  1:6398923/1‑93 (MQ=255)

                                         aaTATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGt                                                    <  1:4915481/93‑1 (MQ=255)

                                         aaTATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGt                                                    <  1:4349829/93‑1 (MQ=255)

                                          atatTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGtt                                                   <  1:5454912/93‑1 (MQ=255)

                                           tatTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTg                                                  >  2:880422/1‑93 (MQ=255)

                                           tatTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTg                                                  >  1:2580783/1‑93 (MQ=255)

                                             ttGCGTCACTAGATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGAt                                                <  2:4391214/93‑1 (MQ=255)

                                             ttGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGAt                                                <  1:3891484/93‑1 (MQ=255)

                                             ttGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGAt                                                <  1:4528159/93‑1 (MQ=255)

                                              tGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACGCCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATc                                               <  1:6912873/93‑1 (MQ=255)

                                               gCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCg                                              >  2:5809978/1‑93 (MQ=255)

                                               gCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCATATCTTTTCGCTATTTCCTTTGTACTGTTGATCg                                              >  1:4064241/1‑93 (MQ=255)

                                                  tCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGcc                                           >  2:54712/1‑93 (MQ=255)

                                                  tCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGcc                                           <  2:5197352/93‑1 (MQ=255)

                                                  tCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGcc                                           >  2:20545/1‑93 (MQ=255)

                                                  tCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGcc                                           <  2:2091851/93‑1 (MQ=255)

                                                   cACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCt                                          <  1:15588/93‑1 (MQ=255)

                                                     cTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGt                                        <  2:1547464/93‑1 (MQ=255)

                                                      tAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGtt                                       >  1:1889160/1‑93 (MQ=255)

                                                       aaaTGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTa                                      <  2:1272975/93‑1 (MQ=255)

                                                        aaTGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAg                                     >  2:1912820/1‑93 (MQ=255)

                                                          tGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGaa                                   <  1:4181157/93‑1 (MQ=255)

                                                           ggACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGann                                  >  2:3412184/1‑91 (MQ=255)

                                                           ggACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGaaa                                  >  2:172175/1‑93 (MQ=255)

                                                           ggACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGaaa                                  >  2:6514081/1‑93 (MQ=255)

                                                              cATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAAttt                               >  1:920873/1‑93 (MQ=255)

                                                                  ggAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTgc                           <  2:4572715/93‑1 (MQ=255)

                                                                  ggAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTgc                           <  2:2565359/93‑1 (MQ=255)

                                                                      tGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCtt                       >  2:1066563/1‑93 (MQ=255)

                                                                       gATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTa                      >  2:526735/1‑93 (MQ=255)

                                                                        atatatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTAt                     <  2:6863154/93‑1 (MQ=255)

                                                                        atatatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTAt                     <  2:4847720/93‑1 (MQ=255)

                                                                         tatatGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATc                    >  1:5036098/1‑93 (MQ=255)

                                                                         tatatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATc                    <  2:2263469/93‑1 (MQ=255)

                                                                         tatatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATc                    <  2:7020923/93‑1 (MQ=255)

                                                                          atatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCt                   >  2:6250795/1‑93 (MQ=255)

                                                                          atatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCt                   >  1:6802739/1‑93 (MQ=255)

                                                                           tatGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTg                  >  2:4754321/1‑93 (MQ=255)

                                                                            atGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGc                 >  2:6384796/1‑93 (MQ=255)

                                                                              gATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCgg               >  2:1000027/1‑93 (MQ=255)

                                                                              gATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCgg               >  2:4981873/1‑93 (MQ=255)

                                                                              gATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCgg               >  1:3876168/1‑93 (MQ=255)

                                                                               aTTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGt              >  1:1504270/1‑93 (MQ=255)

                                                                               aTTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGt              <  1:3681977/93‑1 (MQ=255)

                                                                                ttttATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTc             <  1:1185100/93‑1 (MQ=255)

                                                                                ttttATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTc             >  1:5320884/1‑93 (MQ=255)

                                                                                ttttATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTc             >  2:19761/1‑93 (MQ=255)

                                                                                ttttATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTc             >  2:1700776/1‑93 (MQ=255)

                                                                                 tttATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTca            <  1:6582965/93‑1 (MQ=255)

                                                                                  ttATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTcac           >  2:7257701/1‑93 (MQ=255)

                                                                                   tATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTcaca          <  1:439485/93‑1 (MQ=255)

                                                                                   tATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTcaca          <  1:5979179/93‑1 (MQ=255)

                                                                                           gACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTcc  >  1:2316148/1‑93 (MQ=255)

TTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC  >  NC_000913/3190148‑3190331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCCG  >  NC_000913/3190145‑3190332

TTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGT‑AATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCA                                                                                               >  SRR4302542.6720000/1‑94 (MQ=60)

 TATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCA                                                                                               <  SRR4302542.150986/94‑1 (MQ=60)

  ATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAA                                                                                              <  SRR4302542.2685416/94‑1 (MQ=60)

   TTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAAC                                                                                             <  SRR4302542.3306375/94‑1 (MQ=60)

   TTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAAC                                                                                             <  SRR4302542.4766472/94‑1 (MQ=60)

       CACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATA                                                                                         >  SRR4302542.4920433/1‑94 (MQ=60)

       CACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATA                                                                                         >  SRR4302542.792228/1‑94 (MQ=60)

       CACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATA                                                                                         >  SRR4302542.7427173/1‑94 (MQ=60)

       CACAGATAAATGTAAGCAAGCAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATA                                                                                         >  SRR4302542.3314794/1‑94 (MQ=60)

        ACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAA                                                                                        <  SRR4302542.736001/94‑1 (MQ=60)

        ACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAA                                                                                        <  SRR4302542.5354557/94‑1 (MQ=60)

         CAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAAC                                                                                       <  SRR4302542.1077464/94‑1 (MQ=60)

         CAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAAC                                                                                       <  SRR4302542.2936461/94‑1 (MQ=60)

           GATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACAC                                                                                     >  SRR4302542.6859725/1‑94 (MQ=60)

           GATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACAC                                                                                     <  SRR4302542.1290010/94‑1 (MQ=60)

           GATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACAC                                                                                     >  SRR4302542.1781534/1‑94 (MQ=60)

             TAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCC                                                                                   <  SRR4302542.5991660/94‑1 (MQ=60)

             TAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCC                                                                                   <  SRR4302542.1870294/94‑1 (MQ=60)

              AAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCC                                                                                  <  SRR4302542.972315/94‑1 (MQ=60)

              AAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCC                                                                                  >  SRR4302542.651385/1‑94 (MQ=60)

               AATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCT                                                                                 >  SRR4302542.612098/1‑94 (MQ=60)

               AATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCT                                                                                 <  SRR4302542.825970/94‑1 (MQ=60)

                 TGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTA                                                                               <  SRR4302542.3654371/94‑1 (MQ=60)

                  GTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTAT                                                                              >  SRR4302542.5486911/1‑94 (MQ=60)

                  GTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTAT                                                                              >  SRR4302542.729602/1‑94 (MQ=60)

                  GTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTAT                                                                              <  SRR4302542.1264342/94‑1 (MQ=60)

                    AAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCT                                                                            <  SRR4302542.4429622/94‑1 (MQ=60)

                    AAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCT                                                                            <  SRR4302542.3609336/94‑1 (MQ=60)

                       CAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTT                                                                         >  SRR4302542.3846355/1‑94 (MQ=60)

                       CAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTT                                                                         <  SRR4302542.5553049/94‑1 (MQ=60)

                        AAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTC                                                                        >  SRR4302542.1709443/1‑94 (MQ=60)

                        AAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTC                                                                        >  SRR4302542.2069283/1‑94 (MQ=60)

                           GAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCT                                                                     <  SRR4302542.5674215/94‑1 (MQ=60)

                           GAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCT                                                                     <  SRR4302542.737160/94‑1 (MQ=60)

                            AAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTA                                                                    >  SRR4302542.5242039/1‑94 (MQ=60)

                            AAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTA                                                                    >  SRR4302542.4572718/1‑94 (MQ=60)

                            AAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTA                                                                    >  SRR4302542.5897103/1‑94 (MQ=60)

                            AAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTA                                                                    >  SRR4302542.6694103/1‑94 (MQ=60)

                              ACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATT                                                                  >  SRR4302542.736604/1‑94 (MQ=60)

                               CTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTT                                                                 >  SRR4302542.5241101/1‑94 (MQ=60)

                               CTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTT                                                                 >  SRR4302542.3454140/1‑94 (MQ=60)

                                 ATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCC                                                               <  SRR4302542.3050744/94‑1 (MQ=60)

                                 ATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCC                                                               <  SRR4302542.2632693/94‑1 (MQ=60)

                                  TTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCT                                                              <  SRR4302542.4902060/94‑1 (MQ=60)

                                  TTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCT                                                              >  SRR4302542.3432991/1‑94 (MQ=60)

                                  TTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCT                                                              <  SRR4302542.3569762/94‑1 (MQ=60)

                                   TACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTT                                                             <  SRR4302542.3962651/94‑1 (MQ=60)

                                    ACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTT                                                            <  SRR4302542.2681405/94‑1 (MQ=60)

                                    ACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTT                                                            >  SRR4302542.4696383/1‑94 (MQ=60)

                                    ACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTT                                                            <  SRR4302542.696948/94‑1 (MQ=60)

                                     CAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTG                                                           <  SRR4302542.2641786/94‑1 (MQ=60)

                                     CAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTG                                                           <  SRR4302542.6244708/94‑1 (MQ=60)

                                      AAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGT                                                          >  SRR4302542.3300925/1‑94 (MQ=60)

                                       AAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTA                                                         >  SRR4302542.5255718/1‑94 (MQ=60)

                                        AGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTAC                                                        <  SRR4302542.3898351/94‑1 (MQ=60)

                                        AGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTAC                                                        >  SRR4302542.6066945/1‑94 (MQ=60)

                                        AGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTAC                                                        <  SRR4302542.2835527/94‑1 (MQ=60)

                                         GTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACT                                                       >  SRR4302542.6461975/1‑94 (MQ=60)

                                           AAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGT                                                     >  SRR4302542.2413272/1‑94 (MQ=60)

                                            AATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTT                                                    <  SRR4302542.4963285/94‑1 (MQ=60)

                                            AATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTT                                                    <  SRR4302542.4164616/94‑1 (MQ=60)

                                            AATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTT                                                    <  SRR4302542.4392569/94‑1 (MQ=60)

                                             ATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTG                                                   <  SRR4302542.5507904/94‑1 (MQ=60)

                                             ATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTG                                                   >  SRR4302542.2605798/1‑94 (MQ=60)

                                             ATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTG                                                   >  SRR4302542.7315757/1‑94 (MQ=60)

                                              TATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGA                                                  >  SRR4302542.1497471/1‑94 (MQ=60)

                                                TTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATC                                                <  SRR4302542.2655622/94‑1 (MQ=60)

                                                TTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATC                                                <  SRR4302542.3929904/94‑1 (MQ=60)

                                                TTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATC                                                <  SRR4302542.4572512/94‑1 (MQ=60)

                                                TTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATC                                                <  SRR4302542.4572513/94‑1 (MQ=60)

                                                 TGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACGCCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCG                                               <  SRR4302542.6980738/94‑1 (MQ=60)

                                                 TGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCG                                               >  SRR4302542.622536/1‑94 (MQ=60)

                                                 TGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCATATCTTTTCGCTATTTCCTTTGTACTGTTGATCG                                               >  SRR4302542.4104319/1‑94 (MQ=60)

                                                     TCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCT                                           <  SRR4302542.1112942/94‑1 (MQ=60)

                                                      CACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTG                                          >  SRR4302542.538905/1‑94 (MQ=60)

                                                      CACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTG                                          <  SRR4302542.15721/94‑1 (MQ=60)

                                                       ACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGT                                         >  SRR4302542.4356434/1‑94 (MQ=60)

                                                        CTAAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTT                                        >  SRR4302542.1905510/1‑94 (MQ=60)

                                                          AAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAG                                      <  SRR4302542.2216245/94‑1 (MQ=60)

                                                          AAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAG                                      >  SRR4302542.938365/1‑94 (MQ=60)

                                                          AAATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAG                                      >  SRR4302542.700963/1‑94 (MQ=60)

                                                            ATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAA                                    >  SRR4302542.1310524/1‑94 (MQ=60)

                                                            ATGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAA                                    >  SRR4302542.6885369/1‑94 (MQ=60)

                                                             TGGACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAA                                   <  SRR4302542.4222394/94‑1 (MQ=60)

                                                              GGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAAT                                  >  SRR4302542.3619253/1‑94 (MQ=60)

                                                               GACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATT                                 >  SRR4302542.1255906/1‑94 (MQ=60)

                                                               GACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATT                                 >  SRR4302542.6034833/1‑94 (MQ=60)

                                                                ACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTT                                <  SRR4302542.2656010/94‑1 (MQ=60)

                                                                ACATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTT                                >  SRR4302542.928804/1‑94 (MQ=60)

                                                                  ATTGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTT                              >  SRR4302542.5554837/1‑94 (MQ=60)

                                                                    TGGAGTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGC                            <  SRR4302542.2336669/94‑1 (MQ=60)

                                                                        GTGATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTT                        <  SRR4302542.3608236/94‑1 (MQ=60)

                                                                         TGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCAGCCTGTTAGAAATTTTTGCGCTTA                       >  SRR4302542.5187412/1‑94 (MQ=60)

                                                                          GATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTAT                      <  SRR4302542.1796217/94‑1 (MQ=60)

                                                                           ATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATC                     >  SRR4302542.5084992/1‑94 (MQ=60)

                                                                           ATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATC                     >  SRR4302542.763754/1‑94 (MQ=60)

                                                                           ATATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATC                     >  SRR4302542.891310/1‑94 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    >  SRR4302542.6869624/1‑94 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    <  SRR4302542.1593564/94‑1 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    <  SRR4302542.3985960/94‑1 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    <  SRR4302542.3041853/94‑1 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    <  SRR4302542.5308579/94‑1 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    <  SRR4302542.2990734/94‑1 (MQ=60)

                                                                            TATATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCT                    <  SRR4302542.4905872/94‑1 (MQ=60)

                                                                               ATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCG                 >  SRR4302542.6107336/1‑94 (MQ=60)

                                                                               ATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCG                 <  SRR4302542.4222032/94‑1 (MQ=60)

                                                                               ATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCG                 <  SRR4302542.1557002/94‑1 (MQ=60)

                                                                               ATGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCG                 <  SRR4302542.7420778/94‑1 (MQ=60)

                                                                                TGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGG                >  SRR4302542.3914457/1‑94 (MQ=60)

                                                                                TGATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGG                <  SRR4302542.4867533/94‑1 (MQ=60)

                                                                                 GATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGT               >  SRR4302542.1517282/1‑94 (MQ=60)

                                                                                 GATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGT               <  SRR4302542.4487331/94‑1 (MQ=60)

                                                                                  ATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTC              <  SRR4302542.3718057/94‑1 (MQ=60)

                                                                                  ATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTC              >  SRR4302542.4558624/1‑94 (MQ=60)

                                                                                  ATTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTC              >  SRR4302542.5372571/1‑94 (MQ=60)

                                                                                   TTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCA             <  SRR4302542.1195320/94‑1 (MQ=60)

                                                                                   TTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCA             >  SRR4302542.3927869/1‑94 (MQ=60)

                                                                                   TTTTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCA             >  SRR4302542.5106680/1‑94 (MQ=60)

                                                                                    TTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCAC            <  SRR4302542.6647826/94‑1 (MQ=60)

                                                                                     TTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACA           >  SRR4302542.3241253/1‑94 (MQ=60)

                                                                                     TTATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACA           >  SRR4302542.1997495/1‑94 (MQ=60)

                                                                                      TATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACAT          <  SRR4302542.4308459/94‑1 (MQ=60)

                                                                                      TATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACAT          <  SRR4302542.6037053/94‑1 (MQ=60)

                                                                                      TATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACAT          <  SRR4302542.443296/94‑1 (MQ=60)

                                                                                       ATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATG         <  SRR4302542.1987283/94‑1 (MQ=60)

                                                                                       ATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATG         >  SRR4302542.4986665/1‑94 (MQ=60)

                                                                                       ATTCGCCAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATG         <  SRR4302542.6006975/94‑1 (MQ=60)

                                                                                         TCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCT       <  SRR4302542.2622595/94‑1 (MQ=60)

                                                                                             CGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC   >  SRR4302542.2336019/1‑94 (MQ=60)

                                                                                             CGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC   >  SRR4302542.4978816/1‑94 (MQ=60)

                                                                                             CAACTATACCACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC   >  SRR4302542.3833983/1‑94 (MQ=60)

                                                                                             CAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC   <  SRR4302542.4127570/94‑1 (MQ=60)

                                                                                             CAACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCC   <  SRR4302542.3698597/94‑1 (MQ=60)

                                                                                              AACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCCG  <  SRR4302542.4904314/94‑1 (MQ=60)

TTATTAACACAGATAAATGTAAGCAAGGAAACTATTACAAAGTAAATATTGCGTCACTAAATGGACATTGGAGTGATATATGATTTTATTCGCCGACTATAACACCCCTTATCTTTTCGCTATTTCCTTTGTACTGTTGATCGGCCTGTTAGAAATTTTTGCGCTTATCTGCGGTCACATGCTCTCCG  >  NC_000913/3190145‑3190332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`