Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,234,507	G→A	M109I (ATG→ATA)	ygjQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,234,507	0	G	A	86.6%	787.3 / 75.0	275	M109I (ATG→ATA)	ygjQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (17/20); new base A (102/136); total (119/156)
Fisher's exact test for biased strand distribution p-value = 7.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01

Only 100 of 299 total aligned reads displayed.

CCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGC  >  NC_000913/3234416‑3234596

 cGCAGCAGCGTTGTACCACGCTGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATaca                                                                                         >  1:4836819/1‑93 (MQ=255)

 cGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATaca                                                                                         <  1:461022/93‑1 (MQ=255)

 cGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATaca                                                                                         <  1:3332437/93‑1 (MQ=255)

 cGCAGCAGCGTTGTACCACGCCGGAAAAATGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATaca                                                                                         <  2:4189668/93‑1 (MQ=255)

    agcagcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATacagca                                                                                      <  1:6264898/93‑1 (MQ=255)

    agcagcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATacagca                                                                                      <  1:4046814/93‑1 (MQ=255)

     gcagcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATAcagcag                                                                                     >  1:1737660/1‑93 (MQ=255)

      cagcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAgg                                                                                    <  2:7143035/93‑1 (MQ=255)

       agcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGc                                                                                   <  2:5771623/93‑1 (MQ=255)

       agcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGc                                                                                   <  1:6702932/93‑1 (MQ=255)

       agcGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGc                                                                                   >  1:5286296/1‑93 (MQ=255)

         cGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCtt                                                                                 <  1:7080111/93‑1 (MQ=255)

          gTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCttt                                                                                <  1:7388262/93‑1 (MQ=255)

          gTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCttt                                                                                >  1:2695855/1‑93 (MQ=255)

           ttGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTg                                                                               >  2:7208533/1‑93 (MQ=255)

           ttGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTg                                                                               <  1:3422425/93‑1 (MQ=255)

           ttGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTg                                                                               >  1:2087475/1‑93 (MQ=255)

             gTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGAt                                                                             <  2:1794050/93‑1 (MQ=255)

                ccACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGc                                                                          <  1:3752572/93‑1 (MQ=255)

                  aCGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTa                                                                        <  1:7524708/93‑1 (MQ=255)

                  aCGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTa                                                                        >  1:6761625/1‑93 (MQ=255)

                    gCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTaaa                                                                      <  2:1684942/93‑1 (MQ=255)

                    gCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTaaa                                                                      >  2:3012444/1‑93 (MQ=255)

                    gCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTaaa                                                                      <  1:1824304/93‑1 (MQ=255)

                    gCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTaaa                                                                      >  1:2231552/1‑93 (MQ=255)

                    gCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTaaa                                                                      <  2:4729206/93‑1 (MQ=255)

                     ccGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAg                                                                     <  1:586759/93‑1 (MQ=255)

                      cGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAgg                                                                    >  2:3190567/1‑93 (MQ=255)

                      cGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAgg                                                                    >  2:3881453/1‑93 (MQ=255)

                      cGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAgg                                                                    >  2:3928815/1‑93 (MQ=255)

                      cGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAgg                                                                    >  2:4356734/1‑93 (MQ=255)

                       ggAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGc                                                                   <  1:612665/93‑1 (MQ=255)

                        gAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCg                                                                  >  1:1037288/1‑93 (MQ=255)

                        gAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCg                                                                  <  1:565619/93‑1 (MQ=255)

                           aaGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTAc                                                               <  2:3769870/93‑1 (MQ=255)

                            aGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTAcc                                                              <  2:1466674/93‑1 (MQ=255)

                            aGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTAcc                                                              <  1:3984451/93‑1 (MQ=255)

                             gTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCa                                                             <  1:4883832/93‑1 (MQ=255)

                             gTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCa                                                             <  2:5268547/93‑1 (MQ=255)

                             gTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCa                                                             >  2:1941410/1‑93 (MQ=255)

                                  aTGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCaaa                                                        >  1:5395848/1‑93 (MQ=255)

                                   tGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCaaaa                                                       <  2:287870/93‑1 (MQ=255)

                                   tGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCaaaa                                                       >  2:18662/1‑93 (MQ=255)

                                   tGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCaaaa                                                       <  1:4141024/93‑1 (MQ=255)

                                     gctgctGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGt                                                     >  2:4407285/1‑93 (MQ=255)

                                       tgctgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGa                                                   >  1:6939719/1‑93 (MQ=255)

                                       tgctgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGa                                                   <  1:5534642/93‑1 (MQ=255)

                                       tgctgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGa                                                   >  2:1120908/1‑93 (MQ=255)

                                       tgctgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGa                                                   >  1:3687986/1‑93 (MQ=255)

                                         ctgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAtc                                                 >  1:4512521/1‑93 (MQ=255)

                                          tgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAtct                                                >  2:3277465/1‑93 (MQ=255)

                                          tgGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAtct                                                <  1:1398179/93‑1 (MQ=255)

                                            gTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAtcttc                                              <  1:3011632/93‑1 (MQ=255)

                                             tAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAtcttct                                             >  2:2008777/1‑93 (MQ=255)

                                             tAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAtcttct                                             <  2:2206937/93‑1 (MQ=255)

                                              aaGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTg                                            >  1:2796628/1‑93 (MQ=255)

                                              aaGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTg                                            <  1:427850/93‑1 (MQ=255)

                                               aGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGc                                           >  2:7476882/1‑93 (MQ=255)

                                               aGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGc                                           <  2:2362955/93‑1 (MQ=255)

                                                 tGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGa                                         >  1:7216450/1‑93 (MQ=255)

                                                 tGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGa                                         <  1:3162854/93‑1 (MQ=255)

                                                    cGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTa                                      <  2:3446880/93‑1 (MQ=255)

                                                    cGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTa                                      <  2:6669952/93‑1 (MQ=255)

                                                     gATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAt                                     <  2:4847438/93‑1 (MQ=255)

                                                     gATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAt                                     >  1:7155348/1‑93 (MQ=255)

                                                     gATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAt                                     <  1:6862774/93‑1 (MQ=255)

                                                     gATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAt                                     <  1:2418869/93‑1 (MQ=255)

                                                     gATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAt                                     >  2:6220721/1‑93 (MQ=255)

                                                      aTAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATg                                    <  1:4546367/93‑1 (MQ=255)

                                                       tAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGc                                   <  2:2763011/93‑1 (MQ=255)

                                                       tAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGc                                   <  1:6601091/93‑1 (MQ=255)

                                                         aCGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCg                                 <  2:1576148/93‑1 (MQ=255)

                                                         aCGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCg                                 >  2:1364764/1‑93 (MQ=255)

                                                          cGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCgg                                <  2:5475540/93‑1 (MQ=255)

                                                           ggACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGa                               <  1:97417/93‑1 (MQ=255)

                                                            gACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGAt                              >  1:3278455/1‑93 (MQ=255)

                                                                tAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATtctc                          >  1:1647862/1‑93 (MQ=255)

                                                                  aaaaTTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCaa                        <  2:2409915/93‑1 (MQ=255)

                                                                   aaaTTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCCCAAc                       <  2:7369427/93‑1 (MQ=255)

                                                                     aTTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGc                     >  2:6406781/1‑93 (MQ=255)

                                                                     aTTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGc                     >  2:887946/1‑93 (MQ=255)

                                                                      ttACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCt                    >  2:795467/1‑93 (MQ=255)

                                                                       tACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTg                   <  2:3301592/93‑1 (MQ=255)

                                                                         cGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGa                 <  2:2635503/93‑1 (MQ=255)

                                                                         cGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGa                 <  1:646472/93‑1 (MQ=255)

                                                                          gATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGAt                >  2:3566828/1‑93 (MQ=255)

                                                                              aaGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCgg            <  2:5397596/93‑1 (MQ=255)

                                                                               aGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGt           <  1:2571802/93‑1 (MQ=255)

                                                                               aGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGt           >  1:593834/1‑93 (MQ=255)

                                                                               aGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGt           <  1:7296456/93‑1 (MQ=255)

                                                                                gCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTa          <  2:5842782/93‑1 (MQ=255)

                                                                                 cATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAg         <  2:4595521/93‑1 (MQ=255)

                                                                                 cATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAg         <  2:2513245/93‑1 (MQ=255)

                                                                                   tCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtg       >  1:5087171/1‑93 (MQ=255)

                                                                                     aGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtgcg     >  2:4000393/1‑93 (MQ=255)

                                                                                      ggTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtgcgt    >  2:1530045/1‑93 (MQ=255)

                                                                                      ggTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtgcgt    >  1:1961792/1‑93 (MQ=255)

                                                                                       gTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtgcgtg   >  2:5027121/1‑93 (MQ=255)

                                                                                        tataCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtgcgtgc  >  2:6040219/1‑93 (MQ=255)

                                                                                        tATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAgtgcgtgc  >  1:1249254/1‑93 (MQ=255)

CCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGC  >  NC_000913/3234416‑3234596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGCCAAA  >  NC_000913/3234415‑3234600

ACCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATAC                                                                                              <  SRR4302542.4018692/94‑1 (MQ=60)

 CCGCAGCAGCGTTGTACCACGCTGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACA                                                                                             >  SRR4302542.4883935/1‑94 (MQ=60)

 CCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACA                                                                                             <  SRR4302542.5259729/94‑1 (MQ=60)

 CCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACA                                                                                             <  SRR4302542.635689/94‑1 (MQ=60)

  CGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAG                                                                                            >  SRR4302542.702306/1‑94 (MQ=60)

  CGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAG                                                                                            <  SRR4302542.5099818/94‑1 (MQ=60)

  CGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAG                                                                                            <  SRR4302542.3363799/94‑1 (MQ=60)

  CGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAG                                                                                            <  SRR4302542.2313209/94‑1 (MQ=60)

  CGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAG                                                                                            <  SRR4302542.5250840/94‑1 (MQ=60)

  CGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAG                                                                                            <  SRR4302542.465013/94‑1 (MQ=60)

   GCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGC                                                                                           >  SRR4302542.3311729/1‑94 (MQ=60)

   GCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGC                                                                                           <  SRR4302542.6910221/94‑1 (MQ=60)

   GCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGC                                                                                           <  SRR4302542.3101302/94‑1 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         >  SRR4302542.2106753/1‑94 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         <  SRR4302542.4086735/94‑1 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         >  SRR4302542.4278660/1‑94 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         >  SRR4302542.1752737/1‑94 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         <  SRR4302542.6326632/94‑1 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         >  SRR4302542.6676265/1‑94 (MQ=60)

     AGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAG                                                                                         <  SRR4302542.6326118/94‑1 (MQ=60)

      GCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGG                                                                                        <  SRR4302542.3975534/94‑1 (MQ=60)

      GCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGG                                                                                        >  SRR4302542.4618003/1‑94 (MQ=60)

       CAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGC                                                                                       >  SRR4302542.5337689/1‑94 (MQ=60)

        AGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCT                                                                                      >  SRR4302542.6081564/1‑94 (MQ=60)

        AGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCT                                                                                      <  SRR4302542.6768973/94‑1 (MQ=60)

          CGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTT                                                                                    <  SRR4302542.4927339/94‑1 (MQ=60)

          CGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTT                                                                                    <  SRR4302542.7149592/94‑1 (MQ=60)

          CGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTT                                                                                    >  SRR4302542.2721849/1‑94 (MQ=60)

           GTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTG                                                                                   <  SRR4302542.7460588/94‑1 (MQ=60)

           GTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTG                                                                                   >  SRR4302542.2105494/1‑94 (MQ=60)

           GTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTG                                                                                   <  SRR4302542.540118/94‑1 (MQ=60)

            TTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGA                                                                                  <  SRR4302542.3454485/94‑1 (MQ=60)

              GTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATC                                                                                >  SRR4302542.545634/1‑94 (MQ=60)

              GTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATC                                                                                <  SRR4302542.5983121/94‑1 (MQ=60)

                ACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGC                                                                              <  SRR4302542.685832/94‑1 (MQ=60)

                 CCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCT                                                                             <  SRR4302542.3789696/94‑1 (MQ=60)

                  CACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTA                                                                            >  SRR4302542.6828136/1‑94 (MQ=60)

                   ACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAA                                                                           <  SRR4302542.7598692/94‑1 (MQ=60)

                    CGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAA                                                                          <  SRR4302542.2608332/94‑1 (MQ=60)

                    CGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAA                                                                          >  SRR4302542.2542429/1‑94 (MQ=60)

                    CGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAA                                                                          >  SRR4302542.2250754/1‑94 (MQ=60)

                     GCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAG                                                                         <  SRR4302542.1840098/94‑1 (MQ=60)

                     GCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAG                                                                         >  SRR4302542.1347925/1‑94 (MQ=60)

                      CCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGG                                                                        <  SRR4302542.591821/94‑1 (MQ=60)

                       CGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGC                                                                       >  SRR4302542.699010/1‑94 (MQ=60)

                       CGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGC                                                                       >  SRR4302542.2771828/1‑94 (MQ=60)

                        GGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCG                                                                      <  SRR4302542.617935/94‑1 (MQ=60)

                        GGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCG                                                                      >  SRR4302542.1813420/1‑94 (MQ=60)

                        GGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCG                                                                      >  SRR4302542.5096595/1‑94 (MQ=60)

                        GGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCG                                                                      >  SRR4302542.1046201/1‑94 (MQ=60)

                         GAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGT                                                                     <  SRR4302542.570488/94‑1 (MQ=60)

                          AAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTA                                                                    >  SRR4302542.5862096/1‑94 (MQ=60)

                          AAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTA                                                                    >  SRR4302542.4652502/1‑94 (MQ=60)

                          AAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTA                                                                    >  SRR4302542.2941065/1‑94 (MQ=60)

                          AAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTA                                                                    >  SRR4302542.7542717/1‑94 (MQ=60)

                            AAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACC                                                                  >  SRR4302542.6971873/1‑94 (MQ=60)

                            AAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACC                                                                  >  SRR4302542.724826/1‑94 (MQ=60)

                             AGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCA                                                                 <  SRR4302542.3212416/94‑1 (MQ=60)

                             AGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCA                                                                 <  SRR4302542.4023761/94‑1 (MQ=60)

                             AGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCA                                                                 <  SRR4302542.7303572/94‑1 (MQ=60)

                              GTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAG                                                                <  SRR4302542.4931353/94‑1 (MQ=60)

                              GTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAG                                                                <  SRR4302542.912345/94‑1 (MQ=60)

                              GTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAG                                                                <  SRR4302542.4166270/94‑1 (MQ=60)

                               TGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGC                                                               >  SRR4302542.7317152/1‑94 (MQ=60)

                                GAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCA                                                              >  SRR4302542.4884185/1‑94 (MQ=60)

                                  AATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAA                                                            <  SRR4302542.3359323/94‑1 (MQ=60)

                                  AATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAA                                                            >  SRR4302542.1509067/1‑94 (MQ=60)

                                  AATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAA                                                            >  SRR4302542.2078665/1‑94 (MQ=60)

                                  AATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAA                                                            >  SRR4302542.5448254/1‑94 (MQ=60)

                                    TGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAG                                                          <  SRR4302542.4181823/94‑1 (MQ=60)

                                     GGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGT                                                         <  SRR4302542.2125376/94‑1 (MQ=60)

                                      GCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTG                                                        <  SRR4302542.6590522/94‑1 (MQ=60)

                                      GCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTG                                                        >  SRR4302542.3828121/1‑94 (MQ=60)

                                      GCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTG                                                        >  SRR4302542.4557337/1‑94 (MQ=60)

                                       CTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGA                                                       >  SRR4302542.7007901/1‑94 (MQ=60)

                                       CTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGA                                                       >  SRR4302542.561724/1‑94 (MQ=60)

                                       CTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGA                                                       >  SRR4302542.3724426/1‑94 (MQ=60)

                                        TGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGAT                                                      <  SRR4302542.5588442/94‑1 (MQ=60)

                                         GCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATC                                                     >  SRR4302542.4556742/1‑94 (MQ=60)

                                          CTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCT                                                    >  SRR4302542.1801933/1‑94 (MQ=60)

                                          CTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCT                                                    >  SRR4302542.2817383/1‑94 (MQ=60)

                                           TGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTT                                                   <  SRR4302542.1410257/94‑1 (MQ=60)

                                           TGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTT                                                   >  SRR4302542.43039/1‑94 (MQ=60)

                                           TGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTT                                                   >  SRR4302542.641474/1‑94 (MQ=60)

                                             GTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCT                                                 <  SRR4302542.671972/94‑1 (MQ=60)

                                             GTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCT                                                 <  SRR4302542.3040422/94‑1 (MQ=60)

                                              TAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTG                                                >  SRR4302542.2823536/1‑94 (MQ=60)

                                              TAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTG                                                <  SRR4302542.3476481/94‑1 (MQ=60)

                                               AAGTGGCGATAACGGACGTAAAAATTGCGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGC                                               <  SRR4302542.6778096/94‑1 (MQ=60)

                                               AAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGC                                               <  SRR4302542.4576910/94‑1 (MQ=60)

                                               AAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGC                                               <  SRR4302542.1091384/94‑1 (MQ=60)

                                               AAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGC                                               <  SRR4302542.1692962/94‑1 (MQ=60)

                                               AAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGC                                               <  SRR4302542.431549/94‑1 (MQ=60)

                                               AAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGC                                               <  SRR4302542.6778095/94‑1 (MQ=60)

                                                AGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCG                                              <  SRR4302542.2558829/94‑1 (MQ=60)

                                                 GTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGA                                             >  SRR4302542.7287251/1‑94 (MQ=60)

                                                 GTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGA                                             <  SRR4302542.5976406/94‑1 (MQ=60)

                                                  TGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGAC                                            <  SRR4302542.3192870/94‑1 (MQ=60)

                                                   GGCGATAACGGACGGAAAAATTACCATGAAGCATCAGGGATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACT                                           >  SRR4302542.6004060/1‑94 (MQ=60)

                                                    GCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTA                                          <  SRR4302542.3733300/94‑1 (MQ=60)

                                                     CGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAT                                         >  SRR4302542.7225545/1‑94 (MQ=60)

                                                     CGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAT                                         <  SRR4302542.5551128/94‑1 (MQ=60)

                                                     CGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAT                                         >  SRR4302542.185617/1‑94 (MQ=60)

                                                     CGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAT                                         <  SRR4302542.440674/94‑1 (MQ=60)

                                                     CGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTAT                                         <  SRR4302542.3422967/94‑1 (MQ=60)

                                                      GATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATG                                        <  SRR4302542.2442383/94‑1 (MQ=60)

                                                      GATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATG                                        >  SRR4302542.1401375/1‑94 (MQ=60)

                                                      GATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATG                                        <  SRR4302542.6930200/94‑1 (MQ=60)

                                                       ATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGC                                       <  SRR4302542.4590869/94‑1 (MQ=60)

                                                       ATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGC                                       <  SRR4302542.5786633/94‑1 (MQ=60)

                                                       ATAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGC                                       >  SRR4302542.4677430/1‑94 (MQ=60)

                                                        TAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCC                                      >  SRR4302542.3556892/1‑94 (MQ=60)

                                                        TAACGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCC                                      <  SRR4302542.6666127/94‑1 (MQ=60)

                                                           CGGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGA                                   >  SRR4302542.7263321/1‑94 (MQ=60)

                                                            GGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGAT                                  <  SRR4302542.98237/94‑1 (MQ=60)

                                                            GGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGAT                                  <  SRR4302542.1438487/94‑1 (MQ=60)

                                                            GGACGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGAT                                  >  SRR4302542.3309390/1‑94 (MQ=60)

                                                             GACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATT                                 >  SRR4302542.2431440/1‑94 (MQ=60)

                                                               CGTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCT                               <  SRR4302542.6299192/94‑1 (MQ=60)

                                                                GTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTC                              >  SRR4302542.1662106/1‑94 (MQ=60)

                                                                GTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTC                              >  SRR4302542.2095137/1‑94 (MQ=60)

                                                                GTAAAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTC                              <  SRR4302542.3429772/94‑1 (MQ=60)

                                                                   AAAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAAC                           <  SRR4302542.5304299/94‑1 (MQ=60)

                                                                    AAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACG                          <  SRR4302542.7548341/94‑1 (MQ=60)

                                                                    AAATTACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACG                          <  SRR4302542.3076557/94‑1 (MQ=60)

                                                                        TACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGG                      <  SRR4302542.7105350/94‑1 (MQ=60)

                                                                        TACGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGG                      <  SRR4302542.4110795/94‑1 (MQ=60)

                                                                          CGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGAT                    <  SRR4302542.2892163/94‑1 (MQ=60)

                                                                          CGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGAT                    >  SRR4302542.6433840/1‑94 (MQ=60)

                                                                          CGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGAT                    <  SRR4302542.7212433/94‑1 (MQ=60)

                                                                          CGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGAT                    <  SRR4302542.652025/94‑1 (MQ=60)

                                                                          CGATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGAT                    >  SRR4302542.4042567/1‑94 (MQ=60)

                                                                           GATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATT                   <  SRR4302542.1689119/94‑1 (MQ=60)

                                                                            ATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTC                  >  SRR4302542.1883341/1‑94 (MQ=60)

                                                                            ATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTC                  <  SRR4302542.4065959/94‑1 (MQ=60)

                                                                            ATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTC                  >  SRR4302542.5430831/1‑94 (MQ=60)

                                                                            ATGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTC                  <  SRR4302542.7168216/94‑1 (MQ=60)

                                                                             TGAAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAGGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCG                 >  SRR4302542.7446303/1‑94 (MQ=60)

                                                                               AAGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGT               >  SRR4302542.598955/1‑94 (MQ=60)

                                                                                AGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTA              <  SRR4302542.2596722/94‑1 (MQ=60)

                                                                                AGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTA              <  SRR4302542.4765737/94‑1 (MQ=60)

                                                                                AGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTA              >  SRR4302542.3213151/1‑94 (MQ=60)

                                                                                AGCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTA              <  SRR4302542.7367958/94‑1 (MQ=60)

                                                                                 GCATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAG             <  SRR4302542.444098/94‑1 (MQ=60)

                                                                                   ATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTG           >  SRR4302542.5136615/1‑94 (MQ=60)

                                                                                   ATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTG           <  SRR4302542.5668325/94‑1 (MQ=60)

                                                                                   ATCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTG           >  SRR4302542.7440376/1‑94 (MQ=60)

                                                                                    TCAGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGC          <  SRR4302542.663032/94‑1 (MQ=60)

                                                                                      AGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGT        <  SRR4302542.264352/94‑1 (MQ=60)

                                                                                      AGGTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGT        >  SRR4302542.1978754/1‑94 (MQ=60)

                                                                                        GTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGC      >  SRR4302542.1259994/1‑94 (MQ=60)

                                                                                        GTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGC      >  SRR4302542.3762315/1‑94 (MQ=60)

                                                                                        GTATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGC      >  SRR4302542.805367/1‑94 (MQ=60)

                                                                                          ATACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGCCA    <  SRR4302542.3732539/94‑1 (MQ=60)

                                                                                           TACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGCCAA   <  SRR4302542.2059519/94‑1 (MQ=60)

                                                                                           TACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGCCAA   >  SRR4302542.6949569/1‑94 (MQ=60)

                                                                                            ACAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGCCAAA  >  SRR4302542.4452846/1‑94 (MQ=60)

ACCGCAGCAGCGTTGTACCACGCCGGAAAAGTGAAATGGCTGCTGGTAAGTGGCGATAACGGACGTAAAAATTACGATGAAGCATCAGGTATGCAGCAGGCTTTGATCGCTAAAGGCGTACCAGCAAAAGTGATCTTCTGCGACTATGCCGGATTCTCAACGCTGGATTCGGTAGTGCGTGCCAAA  >  NC_000913/3234415‑3234600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`