Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,347,825 |
C→T |
P95P (CCG→CCA) |
yhbL ← |
sigma cross‑reacting protein 27A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,347,825 | 0 | C | T | 87.9%
| 840.7
/ 64.2
| 282 | P95P (CCG→CCA) | yhbL | sigma cross‑reacting protein 27A |
| Reads supporting (aligned to +/- strand): ref base C (20/14); new base T (134/114); total (154/128) |
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
Only 100 of 292 total aligned reads displayed.
GCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCAC > NC_000913/3347733‑3347914
|
gtgCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGca > 1:4707104/1‑93 (MQ=255)
tgCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGcac < 1:2713277/93‑1 (MQ=255)
cAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAAt > 1:2845337/1‑93 (MQ=255)
cAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAAt > 2:4563724/1‑93 (MQ=255)
aGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATc < 1:5937194/93‑1 (MQ=255)
gcgcCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCa > 2:2585549/1‑93 (MQ=255)
gcgcCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCa > 2:1021035/1‑93 (MQ=255)
gcCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAAc > 2:1292892/1‑93 (MQ=255)
gcCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAAc > 1:3081661/1‑93 (MQ=255)
ccTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACg > 2:6160612/1‑93 (MQ=255)
ccTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACg < 1:1351451/93‑1 (MQ=255)
ccTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACg < 1:6930843/93‑1 (MQ=255)
cTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGc < 1:932849/93‑1 (MQ=255)
cTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGc < 2:4019058/93‑1 (MQ=255)
cTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCACCAAACCTCCCTGGCACAATCAACGc > 1:3789176/1‑93 (MQ=255)
tttAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCa > 1:5237371/1‑93 (MQ=255)
tttAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCa > 2:2006710/1‑93 (MQ=255)
tttAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCa > 2:32920/1‑93 (MQ=255)
aaTTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATcc > 2:4421609/1‑93 (MQ=255)
aTTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCa < 2:2788713/93‑1 (MQ=255)
aTTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCa > 1:6816053/1‑93 (MQ=255)
aTTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCa < 1:1814165/93‑1 (MQ=255)
ttCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAg > 2:6481856/1‑93 (MQ=255)
ttCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAg > 1:715487/1‑93 (MQ=255)
gTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGc < 2:3893950/93‑1 (MQ=255)
gTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGc < 2:6877994/93‑1 (MQ=255)
tCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCg > 1:5580885/1‑93 (MQ=255)
aaCGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGc > 1:2518617/1‑93 (MQ=255)
cGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCAt > 2:5644374/1‑93 (MQ=255)
ggTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATc < 2:7210849/93‑1 (MQ=255)
gTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCg < 1:4265274/93‑1 (MQ=255)
tGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCgg < 1:7342466/93‑1 (MQ=255)
cATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGcc < 2:6760472/93‑1 (MQ=255)
aTTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCt > 1:1104796/1‑93 (MQ=255)
ttCGCTGCCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTg > 2:1583522/1‑93 (MQ=255)
ttCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTg > 2:957908/1‑93 (MQ=255)
ttCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTg > 1:2370203/1‑93 (MQ=255)
ttCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTg < 1:2591792/93‑1 (MQ=255)
cGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTggg < 2:5118100/93‑1 (MQ=255)
gCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAACCCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑c < 2:5275092/93‑1 (MQ=255)
gCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑c < 2:2404156/93‑1 (MQ=255)
cTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑cc > 2:5801892/1‑93 (MQ=255)
cTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑cc > 2:4111002/1‑93 (MQ=255)
tACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCa > 1:3585923/1‑93 (MQ=255)
ccAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCaga > 1:2094310/1‑93 (MQ=255)
ccAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCaga < 2:3088931/93‑1 (MQ=255)
ccAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCaga < 2:3507092/93‑1 (MQ=255)
cAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCagag > 1:1215319/1‑93 (MQ=255)
cAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCagag > 2:228264/1‑93 (MQ=255)
aaGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAgg > 2:7124300/1‑93 (MQ=255)
aaGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAgg > 1:5101027/1‑93 (MQ=255)
aGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGa > 1:1708332/1‑93 (MQ=255)
gACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGAc < 2:3739501/93‑1 (MQ=255)
aCTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACg < 2:7061068/93‑1 (MQ=255)
tGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGa > 1:3437795/1‑93 (MQ=255)
tGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGa > 2:4238020/1‑93 (MQ=255)
tGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGa > 2:6685984/1‑93 (MQ=255)
ggCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGAt < 1:5343883/93‑1 (MQ=255)
aaaaTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTc < 1:4923533/93‑1 (MQ=255)
aaaaTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTc > 1:1510032/1‑93 (MQ=255)
aaTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCAc < 2:6313713/93‑1 (MQ=255)
aaTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCAc > 2:6261545/1‑93 (MQ=255)
aTTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCAcc < 2:1214879/93‑1 (MQ=255)
ttGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACcg < 2:6624296/93‑1 (MQ=255)
ttGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACcg < 1:5156636/93‑1 (MQ=255)
tGCTTAAATTCTTCGCCGCGCCCAAACCCCCCGGCCCCATTAACGCATCCAGGTCCGCCGCAATGGCCTGGGCCCAGAGGACGGATTTCACcg > 1:6151549/1‑93 (MQ=255)
gCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACcgcg > 2:5499591/1‑93 (MQ=255)
tAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGt > 1:6444272/1‑93 (MQ=255)
aaaTTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGtt > 1:3204556/1‑93 (MQ=255)
aaTTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTa < 1:3001183/93‑1 (MQ=255)
aTTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTAt > 2:187356/1‑93 (MQ=255)
aTTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTAt < 1:6269479/93‑1 (MQ=255)
tcttcGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTc < 2:1656110/93‑1 (MQ=255)
cttcGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCg > 2:1713321/1‑93 (MQ=255)
cttcGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCg < 2:5391500/93‑1 (MQ=255)
ttcGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGt > 1:3672866/1‑93 (MQ=255)
ttcGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGt > 1:3991832/1‑93 (MQ=255)
cgccgcGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGc < 2:1338916/93‑1 (MQ=255)
cgccgcGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGc < 2:2495944/93‑1 (MQ=255)
cgccgcGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGc < 2:7196801/93‑1 (MQ=255)
gccgcGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGcc < 1:3747438/93‑1 (MQ=255)
gccgcGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGcc > 2:5988973/1‑93 (MQ=255)
gcgcCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCt > 2:3377328/1‑93 (MQ=255)
gcgcCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCt < 1:416850/93‑1 (MQ=255)
gcgcCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCt > 2:2898806/1‑93 (MQ=255)
gcCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTc < 2:4474498/93‑1 (MQ=255)
gcCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTc < 2:315847/93‑1 (MQ=255)
ccAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCa > 1:4385058/1‑93 (MQ=255)
cAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCaa < 1:5173221/93‑1 (MQ=255)
cAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCaa > 1:2924544/1‑93 (MQ=255)
cAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCaa < 1:1468309/93‑1 (MQ=255)
aaaCCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAAt < 2:3643092/93‑1 (MQ=255)
aaCCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATc < 2:4857215/93‑1 (MQ=255)
aCCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCa > 1:332370/1‑93 (MQ=255)
ccccctGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGc < 1:853996/93‑1 (MQ=255)
ccccctGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGc < 2:7343612/93‑1 (MQ=255)
cccctGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGca < 2:6549511/93‑1 (MQ=255)
cccctGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGca > 1:6109386/1‑93 (MQ=255)
cccccGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGca < 1:7440542/93‑1 (MQ=255)
ccctGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGcac < 1:5743113/93‑1 (MQ=255)
|
GCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCAC > NC_000913/3347733‑3347914
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACATTG > NC_000913/3347732‑3347918
|
CGCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCT < SRR4302542.3997867/94‑1 (MQ=60)
CGCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCT < SRR4302542.6562707/94‑1 (MQ=60)
CGCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCT < SRR4302542.2991628/94‑1 (MQ=60)
GCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTG > SRR4302542.217811/1‑94 (MQ=60)
GCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTG < SRR4302542.5786449/94‑1 (MQ=60)
CTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGG < SRR4302542.7079673/94‑1 (MQ=60)
CTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGG > SRR4302542.3742679/1‑94 (MQ=60)
CTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGG < SRR4302542.2985799/94‑1 (MQ=60)
CTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGG > SRR4302542.1242686/1‑94 (MQ=60)
TGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCA > SRR4302542.4753017/1‑94 (MQ=60)
TGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCA > SRR4302542.4386807/1‑94 (MQ=60)
TGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACA < SRR4302542.2739446/94‑1 (MQ=60)
GCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAA > SRR4302542.5222283/1‑94 (MQ=60)
CCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAAT > SRR4302542.2872680/1‑94 (MQ=60)
CCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAAT < SRR4302542.7239424/94‑1 (MQ=60)
CAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATC < SRR4302542.679060/94‑1 (MQ=60)
CAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATC > SRR4302542.7538094/1‑94 (MQ=60)
AGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCA > SRR4302542.5221801/1‑94 (MQ=60)
AGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCA < SRR4302542.5994715/94‑1 (MQ=60)
GCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAA < SRR4302542.3311857/94‑1 (MQ=60)
CGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAAC > SRR4302542.3111003/1‑94 (MQ=60)
CGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAAC < SRR4302542.5631969/94‑1 (MQ=60)
CGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAAC < SRR4302542.3526168/94‑1 (MQ=60)
CCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGC < SRR4302542.1363122/94‑1 (MQ=60)
CCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGC > SRR4302542.519775/1‑94 (MQ=60)
CCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGC > SRR4302542.6087329/1‑94 (MQ=60)
CCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGC < SRR4302542.6998889/94‑1 (MQ=60)
CCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCACCAAACCTCCCTGGCACAATCAACGC > SRR4302542.3826641/1‑94 (MQ=60)
CTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCA > SRR4302542.5288287/1‑94 (MQ=60)
CTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCA < SRR4302542.940879/94‑1 (MQ=60)
TAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCC > SRR4302542.4140765/1‑94 (MQ=60)
AATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCA > SRR4302542.6883060/1‑94 (MQ=60)
AATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCA > SRR4302542.3867626/1‑94 (MQ=60)
ATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAG > SRR4302542.721659/1‑94 (MQ=60)
ATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAG > SRR4302542.7325985/1‑94 (MQ=60)
ATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAG < SRR4302542.1829876/94‑1 (MQ=60)
CACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTC > SRR4302542.2561626/1‑94 (MQ=60)
CACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTC < SRR4302542.1001424/94‑1 (MQ=60)
CGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAG > SRR4302542.1391362/1‑94 (MQ=60)
GGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGC > SRR4302542.5249115/1‑94 (MQ=60)
GGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGC > SRR4302542.311902/1‑94 (MQ=60)
GTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCG > SRR4302542.5635113/1‑94 (MQ=60)
GTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCG > SRR4302542.6439638/1‑94 (MQ=60)
CAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGC < SRR4302542.3079821/94‑1 (MQ=60)
CAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGC > SRR4302542.2543046/1‑94 (MQ=60)
AACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCA > SRR4302542.2499291/1‑94 (MQ=60)
ACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCAT > SRR4302542.3933287/1‑94 (MQ=60)
CGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATC < SRR4302542.5381554/94‑1 (MQ=60)
CGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATC < SRR4302542.3812426/94‑1 (MQ=60)
CGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAA‑CCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCG < SRR4302542.1492855/94‑1 (MQ=60)
GGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCG < SRR4302542.6920437/94‑1 (MQ=60)
GTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGG < SRR4302542.4307257/94‑1 (MQ=60)
TGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGC < SRR4302542.7414386/94‑1 (MQ=60)
CATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCT > SRR4302542.1114240/1‑94 (MQ=60)
CATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCT < SRR4302542.7606241/94‑1 (MQ=60)
CATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCT > SRR4302542.4077997/1‑94 (MQ=60)
CATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCT < SRR4302542.6189414/94‑1 (MQ=60)
ATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTG > SRR4302542.2390983/1‑94 (MQ=60)
ATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTG < SRR4302542.5113291/94‑1 (MQ=60)
TTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGG < SRR4302542.2616891/94‑1 (MQ=60)
TCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG > SRR4302542.2581882/1‑94 (MQ=60)
GCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CC < SRR4302542.3086863/94‑1 (MQ=60)
GCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CC > SRR4302542.1677291/1‑94 (MQ=60)
CTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCA > SRR4302542.3619373/1‑94 (MQ=60)
CTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCA > SRR4302542.920596/1‑94 (MQ=60)
TACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAG > SRR4302542.2337417/1‑94 (MQ=60)
TACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAG > SRR4302542.1593248/1‑94 (MQ=60)
ACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGA > SRR4302542.5631828/1‑94 (MQ=60)
ACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGA > SRR4302542.2112378/1‑94 (MQ=60)
CCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAG > SRR4302542.1225779/1‑94 (MQ=60)
CCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAG > SRR4302542.5838206/1‑94 (MQ=60)
CCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAG < SRR4302542.6035318/94‑1 (MQ=60)
CAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGG < SRR4302542.2662962/94‑1 (MQ=60)
CAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGG < SRR4302542.2411009/94‑1 (MQ=60)
CAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGG > SRR4302542.5150586/1‑94 (MQ=60)
AAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGA > SRR4302542.316315/1‑94 (MQ=60)
AAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGA > SRR4302542.196015/1‑94 (MQ=60)
AAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGA > SRR4302542.1723175/1‑94 (MQ=60)
AAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGA > SRR4302542.1775057/1‑94 (MQ=60)
AGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGAC > SRR4302542.3775076/1‑94 (MQ=60)
GACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACG < SRR4302542.6822610/94‑1 (MQ=60)
GACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACG > SRR4302542.6237773/1‑94 (MQ=60)
ACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGG < SRR4302542.2770522/94‑1 (MQ=60)
CTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGA > SRR4302542.3469978/1‑94 (MQ=60)
TGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAATCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGAT < SRR4302542.1141806/94‑1 (MQ=60)
TGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGAT > SRR4302542.151333/1‑94 (MQ=60)
TGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGAT < SRR4302542.2688095/94‑1 (MQ=60)
GGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATT < SRR4302542.3786349/94‑1 (MQ=60)
GGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATT < SRR4302542.5395796/94‑1 (MQ=60)
GCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTT < SRR4302542.3631521/94‑1 (MQ=60)
CAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTC > SRR4302542.1523079/1‑94 (MQ=60)
AAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCA < SRR4302542.4971395/94‑1 (MQ=60)
AAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCA > SRR4302542.1229338/1‑94 (MQ=60)
AAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCAC > SRR4302542.6502835/1‑94 (MQ=60)
AATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACC < SRR4302542.7134125/94‑1 (MQ=60)
ATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCG < SRR4302542.4240495/94‑1 (MQ=60)
TTGCTTAAATTCTTCGCCGCGCCCAAACCCCCCGGCCCCATTAACGCATCCAGGTCCGCCGCAATGGCCTGGGCCCAGAGGACGGATTTCACCG > SRR4302542.6211107/1‑94 (MQ=26)
TTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGC < SRR4302542.5206749/94‑1 (MQ=60)
TTGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGC > SRR4302542.6254618/1‑94 (MQ=60)
TGCTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCG > SRR4302542.2377334/1‑94 (MQ=60)
CTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCG < SRR4302542.2057660/94‑1 (MQ=60)
CTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCG < SRR4302542.49134/94‑1 (MQ=60)
CTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCG > SRR4302542.4456825/1‑94 (MQ=60)
CTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCG > SRR4302542.5699351/1‑94 (MQ=60)
CTTAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCG < SRR4302542.3513548/94‑1 (MQ=60)
TTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGT > SRR4302542.6507733/1‑94 (MQ=60)
TAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTT > SRR4302542.7427970/1‑94 (MQ=60)
TAAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTT > SRR4302542.3234916/1‑94 (MQ=60)
AAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTA > SRR4302542.5150930/1‑94 (MQ=60)
AAATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTA > SRR4302542.4246077/1‑94 (MQ=60)
AATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTAT < SRR4302542.7442040/94‑1 (MQ=60)
AATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTAT < SRR4302542.3029886/94‑1 (MQ=60)
AATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTAT > SRR4302542.1769567/1‑94 (MQ=60)
ATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATT > SRR4302542.2995406/1‑94 (MQ=60)
ATTCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATT < SRR4302542.6331272/94‑1 (MQ=60)
TCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCG < SRR4302542.7183878/94‑1 (MQ=60)
TCTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCG < SRR4302542.5305408/94‑1 (MQ=60)
CTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGT < SRR4302542.954100/94‑1 (MQ=60)
CTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGT > SRR4302542.3708333/1‑94 (MQ=60)
CTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGT > SRR4302542.4031215/1‑94 (MQ=60)
CTTCGCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGT < SRR4302542.2921539/94‑1 (MQ=60)
GCCGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCG < SRR4302542.3784522/94‑1 (MQ=60)
CGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCT > SRR4302542.1463341/1‑94 (MQ=60)
CGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCT > SRR4302542.323817/1‑94 (MQ=60)
CGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCT < SRR4302542.2779492/94‑1 (MQ=60)
CGCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCT > SRR4302542.5071674/1‑94 (MQ=60)
GCGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTT < SRR4302542.420439/94‑1 (MQ=60)
CGCCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTC < SRR4302542.4912932/94‑1 (MQ=60)
GCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCA > SRR4302542.4428083/1‑94 (MQ=60)
CCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAA > SRR4302542.2952562/1‑94 (MQ=60)
CCAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAA < SRR4302542.5248767/94‑1 (MQ=60)
CAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAAT > SRR4302542.3424942/1‑94 (MQ=60)
CAAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAAT < SRR4302542.5223493/94‑1 (MQ=60)
CAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAAT < SRR4302542.1480986/94‑1 (MQ=60)
AAACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATC > SRR4302542.3024686/1‑94 (MQ=60)
AACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCA < SRR4302542.6922400/94‑1 (MQ=60)
AACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCA > SRR4302542.454104/1‑94 (MQ=60)
AACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCA > SRR4302542.335257/1‑94 (MQ=60)
AACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCA < SRR4302542.3457586/94‑1 (MQ=60)
AACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCA < SRR4302542.5801004/94‑1 (MQ=60)
AACCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCA < SRR4302542.3659878/94‑1 (MQ=60)
CCCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGC < SRR4302542.89467/94‑1 (MQ=60)
CCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCA < SRR4302542.5637485/94‑1 (MQ=60)
CCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCA > SRR4302542.6168513/1‑94 (MQ=60)
CCCCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCA < SRR4302542.861353/94‑1 (MQ=60)
CCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCAC < SRR4302542.7513401/94‑1 (MQ=60)
CCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACA < SRR4302542.5798872/94‑1 (MQ=60)
CCCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACA > SRR4302542.627534/1‑94 (MQ=60)
CCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACAT > SRR4302542.7120820/1‑94 (MQ=60)
CCTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACAT > SRR4302542.7120821/1‑94 (MQ=60)
CTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACATT < SRR4302542.5194540/94‑1 (MQ=60)
CTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACATT > SRR4302542.3153696/1‑94 (MQ=60)
CTGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACATT > SRR4302542.4855702/1‑94 (MQ=60)
TGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACATTG < SRR4302542.6463465/94‑1 (MQ=60)
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CGCTTGTGCCAGCGCCTTTAATTCACGGTCAACGGTGCATTCGCTACCAAGACTGGCAAAATTGCTTAAATTCTTCGCCGCGCCAAACCCCCCCGGCACAATCAACGCATCCAGTTCAGCGGCATCGGCCTGGG‑CCAGAGGACGGATTTCACCGCGCGTTATTCGTGCCGCTTCAATCAGCACATTG > NC_000913/3347732‑3347918
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
