Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,362,606 |
A→G |
D722G (GAC→GGC) |
yhcD → |
putative outer membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,362,606 | 0 | A | G | 85.9%
| 756.9
/ 110.3
| 320 | D722G (GAC→GGC) | yhcD | putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (26/19); new base G (102/172); total (128/192) |
| Fisher's exact test for biased strand distribution p-value = 1.32e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 |
Only 100 of 324 total aligned reads displayed.
AAAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAAT > NC_000913/3362514‑3362697
|
aaaaaTGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGa > 1:2061008/1‑93 (MQ=255)
aaaaTGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGAc > 2:2007889/1‑93 (MQ=255)
aaTGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCcggcgg > 1:549766/1‑93 (MQ=255)
aaTGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACgg > 1:3519269/1‑93 (MQ=255)
aTCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCaaa > 2:652760/1‑93 (MQ=255)
aaaCAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCaaaaaa < 2:6634552/93‑1 (MQ=255)
aaaCAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCaaaaaa < 1:6332306/93‑1 (MQ=255)
aaaCAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCaaaaaa > 2:5045330/1‑93 (MQ=255)
aCAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACt > 1:1141826/1‑93 (MQ=255)
aCAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACt > 2:6194440/1‑93 (MQ=255)
aCAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACt > 1:7361763/1‑93 (MQ=255)
aaGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGc > 1:4547218/1‑93 (MQ=255)
ggCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGccc < 1:3887686/93‑1 (MQ=255)
ccGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCag > 1:1185576/1‑93 (MQ=255)
cGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCaga < 1:5867990/93‑1 (MQ=255)
cGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCaga < 2:4777557/93‑1 (MQ=255)
cGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCaga < 2:5836695/93‑1 (MQ=255)
gtggtgCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCagag > 2:4536768/1‑93 (MQ=255)
gtggtgCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCagag < 2:4844651/93‑1 (MQ=255)
nngtgCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAgg < 1:2247143/91‑1 (MQ=255)
ggtgCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGc < 1:6733129/93‑1 (MQ=255)
gtgCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCg > 2:2277604/1‑93 (MQ=255)
tgCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGt < 2:2128713/93‑1 (MQ=255)
cAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTg < 1:5167497/93‑1 (MQ=255)
gTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCg > 2:5738381/1‑93 (MQ=255)
tAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGa > 2:6741634/1‑93 (MQ=255)
aGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGAt > 2:153422/1‑93 (MQ=255)
aaGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAg > 1:7045456/1‑93 (MQ=255)
aaGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAg < 1:6957332/93‑1 (MQ=255)
aGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGa < 1:4375792/93‑1 (MQ=255)
aGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGa < 2:1640445/93‑1 (MQ=255)
gTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGAt > 1:1107248/1‑93 (MQ=255)
tCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATa < 1:3788374/93‑1 (MQ=255)
tCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATa < 2:3676996/93‑1 (MQ=255)
cGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAg < 2:2989475/93‑1 (MQ=255)
cGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAg < 1:6612122/93‑1 (MQ=255)
ggATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGt > 2:1807939/1‑93 (MQ=255)
ggATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGt < 1:2904886/93‑1 (MQ=255)
ggATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGt > 1:642993/1‑93 (MQ=255)
ggATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGt > 1:4139091/1‑93 (MQ=255)
aTTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGa < 2:4645085/93‑1 (MQ=255)
ttCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGaa > 2:6712439/1‑93 (MQ=255)
ttCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGaa < 1:1506483/93‑1 (MQ=255)
tCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAg > 1:1462094/1‑93 (MQ=255)
tCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAg < 2:6270409/93‑1 (MQ=255)
cAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAgg < 1:6498984/93‑1 (MQ=255)
gTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCa > 2:7314311/1‑93 (MQ=255)
gTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCa > 1:5950023/1‑93 (MQ=255)
gCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAAc < 1:5349885/93‑1 (MQ=255)
cGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACt > 2:7474016/1‑93 (MQ=255)
gATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTa < 2:3536183/93‑1 (MQ=255)
gATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTa > 2:2371156/1‑93 (MQ=255)
aTAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTAt > 1:1953356/1‑93 (MQ=255)
aaCACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCt < 2:4990424/93‑1 (MQ=255)
aaCACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCt < 2:4348666/93‑1 (MQ=255)
aaCACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCt < 1:7228077/93‑1 (MQ=255)
acacAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTg < 1:5602635/93‑1 (MQ=255)
acacAACGCCGTGCATTACTCAATATCACACTTTCCGGCAGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTg > 2:2750991/1‑93 (MQ=255)
cacaACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGa < 2:5256599/93‑1 (MQ=255)
cacaACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGa < 2:5555248/93‑1 (MQ=255)
aaCGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGacaa > 1:2474810/1‑93 (MQ=255)
aaCGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGacaa < 2:1328297/93‑1 (MQ=255)
aaCGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGacaa > 1:3298751/1‑93 (MQ=255)
aCGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGacaac > 2:5934105/1‑93 (MQ=255)
cGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGacaaca < 2:1260031/93‑1 (MQ=255)
gCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACAt > 2:7069106/1‑93 (MQ=255)
gCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACAt < 2:6380774/93‑1 (MQ=255)
gCCATGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACAt < 2:4147056/93‑1 (MQ=255)
gTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAg < 1:5673987/93‑1 (MQ=255)
tGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGt < 2:694808/93‑1 (MQ=255)
gCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTg > 1:3460180/1‑93 (MQ=255)
gCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTg > 1:4861441/1‑93 (MQ=255)
aTTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGa < 1:4198272/93‑1 (MQ=255)
tccTCAATATCACCCTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTAAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATg < 1:2418352/91‑1 (MQ=255)
tACTCAATATCCCACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATg < 1:4622030/93‑1 (MQ=255)
tACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATg > 1:4900335/1‑93 (MQ=255)
aCTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGa < 1:406789/93‑1 (MQ=255)
aCTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGa < 2:4192869/93‑1 (MQ=255)
aCTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGa > 2:7527354/1‑93 (MQ=255)
cTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGAc < 1:1749277/93‑1 (MQ=255)
cTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGAc > 2:4090837/1‑93 (MQ=255)
tCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACg < 2:913146/93‑1 (MQ=255)
tCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACg < 1:763253/93‑1 (MQ=255)
tCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACg > 1:2743147/1‑93 (MQ=255)
cAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACgg < 2:7111272/93‑1 (MQ=255)
cAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACgg > 1:6095664/1‑93 (MQ=255)
aaTATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGgt < 2:20838/93‑1 (MQ=255)
aaTATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGgt < 2:7143902/93‑1 (MQ=255)
tatCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGgtgt > 1:2968903/1‑93 (MQ=255)
atCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGtgtt > 2:5463980/1‑93 (MQ=255)
atCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGtgtt < 2:613331/93‑1 (MQ=255)
acacTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTa < 1:6049337/93‑1 (MQ=255)
acacTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTa > 2:2441908/1‑93 (MQ=255)
acacTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTa < 1:7412566/93‑1 (MQ=255)
acTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTAtt < 1:4985292/93‑1 (MQ=255)
acTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTAtt > 2:2646093/1‑93 (MQ=255)
acTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTAtt > 2:3202219/1‑93 (MQ=255)
tttCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTcc < 2:104741/93‑1 (MQ=255)
tCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTc > 1:5718434/1‑93 (MQ=255)
gACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAAt < 2:5402351/93‑1 (MQ=255)
|
AAAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAAT > NC_000913/3362514‑3362697
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAA > NC_000913/3362513‑3362699
|
CAAAAATGATCAAACAATGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGG < SRR4302542.3070777/94‑1 (MQ=60)
CAAAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGA > SRR4302542.2078823/1‑94 (MQ=60)
AAAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGC > SRR4302542.4991783/1‑94 (MQ=60)
AAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCG > SRR4302542.2424557/1‑94 (MQ=60)
AAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGG < SRR4302542.1116834/94‑1 (MQ=60)
AAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGG > SRR4302542.554510/1‑94 (MQ=60)
AAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGG > SRR4302542.1509900/1‑94 (MQ=60)
AAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGG > SRR4302542.4125115/1‑94 (MQ=60)
AAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGG > SRR4302542.3552165/1‑94 (MQ=60)
AATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGC < SRR4302542.2416954/94‑1 (MQ=60)
TGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAA > SRR4302542.984191/1‑94 (MQ=60)
TGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAA > SRR4302542.5749184/1‑94 (MQ=60)
ATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAA < SRR4302542.6231207/94‑1 (MQ=60)
TCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAA > SRR4302542.4124032/1‑94 (MQ=60)
TCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAA < SRR4302542.4220968/94‑1 (MQ=60)
CAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAA > SRR4302542.4185601/1‑94 (MQ=60)
AAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAAC > SRR4302542.3512035/1‑94 (MQ=60)
AAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAAC < SRR4302542.6394701/94‑1 (MQ=60)
AAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAAC > SRR4302542.4971000/1‑94 (MQ=60)
AAACAAGGCCGTGGTGCAGTACGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAAC < SRR4302542.2973468/94‑1 (MQ=60)
AACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACT > SRR4302542.1151605/1‑94 (MQ=60)
AACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACT < SRR4302542.1842406/94‑1 (MQ=60)
AACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACT > SRR4302542.7433870/1‑94 (MQ=60)
ACAGGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTG < SRR4302542.3816646/94‑1 (MQ=60)
ACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTG < SRR4302542.4046344/94‑1 (MQ=60)
CAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGC > SRR4302542.4591728/1‑94 (MQ=60)
AAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCC > SRR4302542.4910021/1‑94 (MQ=60)
AAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGNN > SRR4302542.2074411/1‑94 (MQ=60)
AGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCC < SRR4302542.5668996/94‑1 (MQ=60)
AGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCC < SRR4302542.293973/94‑1 (MQ=60)
GGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCA < SRR4302542.6981955/94‑1 (MQ=60)
GGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCA > SRR4302542.6757782/1‑94 (MQ=60)
GGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCA < SRR4302542.3926068/94‑1 (MQ=60)
GCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAG > SRR4302542.1195798/1‑94 (MQ=60)
CGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAG > SRR4302542.7444582/1‑94 (MQ=60)
CGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAG < SRR4302542.5924877/94‑1 (MQ=60)
CGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAG < SRR4302542.5951716/94‑1 (MQ=60)
GTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGG > SRR4302542.7460875/1‑94 (MQ=60)
TGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGC > SRR4302542.6924270/1‑94 (MQ=60)
NNGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGC < SRR4302542.2266468/94‑1 (MQ=60)
GGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCG < SRR4302542.6799404/94‑1 (MQ=60)
GTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGT < SRR4302542.6497914/94‑1 (MQ=60)
TGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTT > SRR4302542.5641538/1‑94 (MQ=60)
TGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTT > SRR4302542.7575638/1‑94 (MQ=60)
GCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTG > SRR4302542.5879753/1‑94 (MQ=60)
GCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTG > SRR4302542.6467796/1‑94 (MQ=60)
CAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGC > SRR4302542.2664873/1‑94 (MQ=60)
CAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGC < SRR4302542.5217719/94‑1 (MQ=60)
CAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGC > SRR4302542.4667246/1‑94 (MQ=60)
CAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTCGC < SRR4302542.6444038/94‑1 (MQ=60)
AGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCTTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCG < SRR4302542.6130314/94‑1 (MQ=60)
AGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCG < SRR4302542.6696481/94‑1 (MQ=60)
AGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCG > SRR4302542.2269488/1‑94 (MQ=60)
AGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCG < SRR4302542.2772567/94‑1 (MQ=60)
AGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATT < SRR4302542.5314492/94‑1 (MQ=60)
AGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATT < SRR4302542.2134607/94‑1 (MQ=60)
GGGAAAGTCGGATTCAGTGCGATAACACAACACCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTG < SRR4302542.1634180/94‑1 (MQ=60)
GGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGA > SRR4302542.4331864/1‑94 (MQ=60)
AAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAG > SRR4302542.7114649/1‑94 (MQ=60)
AAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGA < SRR4302542.4552144/94‑1 (MQ=60)
AAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGA < SRR4302542.7025687/94‑1 (MQ=60)
AGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGAT < SRR4302542.4418744/94‑1 (MQ=60)
AGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGAT > SRR4302542.1116716/1‑94 (MQ=60)
AGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGAT > SRR4302542.726071/1‑94 (MQ=60)
AGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGAT < SRR4302542.4620424/94‑1 (MQ=60)
GTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATA < SRR4302542.5486672/94‑1 (MQ=60)
TCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAG < SRR4302542.3853533/94‑1 (MQ=60)
TCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAG < SRR4302542.3825831/94‑1 (MQ=60)
CGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACCCTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGT < SRR4302542.289842/94‑1 (MQ=60)
CGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGT < SRR4302542.6677262/94‑1 (MQ=60)
CGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGT > SRR4302542.4179871/1‑94 (MQ=60)
CGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGT > SRR4302542.648522/1‑94 (MQ=60)
GGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTG < SRR4302542.2932760/94‑1 (MQ=60)
GGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTG < SRR4302542.7402001/94‑1 (MQ=60)
GGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTG > SRR4302542.596172/1‑94 (MQ=60)
GGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTG < SRR4302542.6608499/94‑1 (MQ=60)
GATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGA < SRR4302542.1478692/94‑1 (MQ=60)
ATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAA < SRR4302542.5122916/94‑1 (MQ=60)
ATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAA < SRR4302542.5000690/94‑1 (MQ=60)
ATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAA > SRR4302542.7386552/1‑94 (MQ=60)
TTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAG < SRR4302542.1519511/94‑1 (MQ=60)
TTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAG > SRR4302542.1474718/1‑94 (MQ=60)
TCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGG > SRR4302542.6690260/1‑94 (MQ=60)
TCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGG < SRR4302542.5556520/94‑1 (MQ=60)
TCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGG < SRR4302542.3388917/94‑1 (MQ=60)
TCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGG < SRR4302542.2189604/94‑1 (MQ=60)
TCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGG < SRR4302542.3388918/94‑1 (MQ=60)
TCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGG > SRR4302542.5241884/1‑94 (MQ=60)
CAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGC < SRR4302542.801590/94‑1 (MQ=60)
CAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGC < SRR4302542.6563040/94‑1 (MQ=60)
AGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCA > SRR4302542.6007650/1‑94 (MQ=60)
GTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAA < SRR4302542.323583/94‑1 (MQ=60)
TGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAAC < SRR4302542.6316257/94‑1 (MQ=60)
GCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACT < SRR4302542.5401847/94‑1 (MQ=60)
CGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTA > SRR4302542.1938407/1‑94 (MQ=60)
CGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTA > SRR4302542.4049457/1‑94 (MQ=60)
GATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTAT > SRR4302542.4809342/1‑94 (MQ=60)
GATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTAT > SRR4302542.1970251/1‑94 (MQ=60)
GATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTAT < SRR4302542.2496591/94‑1 (MQ=60)
AACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTG < SRR4302542.7340439/94‑1 (MQ=60)
AACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTG < SRR4302542.7298985/94‑1 (MQ=60)
ACACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGA < SRR4302542.5657063/94‑1 (MQ=60)
CACAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGAC > SRR4302542.54545/1‑94 (MQ=60)
CAACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAA > SRR4302542.2498818/1‑94 (MQ=60)
CAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAA > SRR4302542.3329870/1‑94 (MQ=60)
ACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACA < SRR4302542.391354/94‑1 (MQ=60)
ACGCCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACA < SRR4302542.1117018/94‑1 (MQ=60)
CCGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCA < SRR4302542.3766206/94‑1 (MQ=60)
CGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAG < SRR4302542.7548450/94‑1 (MQ=60)
CGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAG < SRR4302542.6130115/94‑1 (MQ=60)
CGTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAG > SRR4302542.2491747/1‑94 (MQ=60)
CGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAG > SRR4302542.1427794/1‑94 (MQ=60)
GTGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGT < SRR4302542.5729089/94‑1 (MQ=60)
TGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTG > SRR4302542.3492578/1‑94 (MQ=60)
TGCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTG < SRR4302542.5902119/94‑1 (MQ=60)
TGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTG > SRR4302542.4908787/1‑94 (MQ=60)
GCATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGG < SRR4302542.4533165/94‑1 (MQ=60)
CATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGA < SRR4302542.7137263/94‑1 (MQ=60)
CATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGA > SRR4302542.600787/1‑94 (MQ=60)
CATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGA > SRR4302542.5088659/1‑94 (MQ=60)
ATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGAT < SRR4302542.6095405/94‑1 (MQ=60)
ATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGAT < SRR4302542.4239668/94‑1 (MQ=60)
ATTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGAT > SRR4302542.486350/1‑94 (MQ=60)
TTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATG < SRR4302542.3533833/94‑1 (MQ=60)
TTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATG > SRR4302542.4947967/1‑94 (MQ=60)
TTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATG < SRR4302542.19703/94‑1 (MQ=60)
TTACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATG > SRR4302542.704254/1‑94 (MQ=60)
TCCTCAATATCACCCTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTAAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGA < SRR4302542.2441862/94‑1 (MQ=60)
TACTCAATATCCCACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGA < SRR4302542.4667185/94‑1 (MQ=60)
ACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGAC < SRR4302542.6548856/94‑1 (MQ=60)
ACTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGAC < SRR4302542.410304/94‑1 (MQ=60)
CTCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACG < SRR4302542.1764453/94‑1 (MQ=60)
CTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACG > SRR4302542.2769592/1‑94 (MQ=60)
TCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGG > SRR4302542.6154661/1‑94 (MQ=60)
TCAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGG < SRR4302542.769862/94‑1 (MQ=60)
CAATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGT < SRR4302542.5688810/94‑1 (MQ=60)
CAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGT < SRR4302542.2968563/94‑1 (MQ=60)
CAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGT > SRR4302542.5442639/1‑94 (MQ=60)
AATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTG < SRR4302542.5818962/94‑1 (MQ=60)
ATATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGT > SRR4302542.2997345/1‑94 (MQ=60)
TATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTT < SRR4302542.6169710/94‑1 (MQ=60)
TATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTT < SRR4302542.5758430/94‑1 (MQ=60)
TATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTT < SRR4302542.4626940/94‑1 (MQ=60)
TATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTT < SRR4302542.1162808/94‑1 (MQ=60)
ATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTG < SRR4302542.3660508/94‑1 (MQ=60)
ATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTG < SRR4302542.6592378/94‑1 (MQ=60)
ATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTG > SRR4302542.1713293/1‑94 (MQ=60)
ATCACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTG < SRR4302542.3299193/94‑1 (MQ=60)
ACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTAT < SRR4302542.1371625/94‑1 (MQ=60)
ACACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTAT < SRR4302542.6107887/94‑1 (MQ=60)
ACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTAT < SRR4302542.7485112/94‑1 (MQ=60)
CACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATT > SRR4302542.2708907/1‑94 (MQ=60)
ACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTC < SRR4302542.4357627/94‑1 (MQ=60)
ACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTC < SRR4302542.5033666/94‑1 (MQ=60)
ACTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTC < SRR4302542.7057168/94‑1 (MQ=60)
CTTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCC > SRR4302542.1160599/1‑94 (MQ=60)
TTTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCT < SRR4302542.1706181/94‑1 (MQ=60)
TTCCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTC > SRR4302542.5773935/1‑94 (MQ=60)
CCGGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAA < SRR4302542.4912383/94‑1 (MQ=60)
CGGCGGCAAAAAACTGCCAAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAAT > SRR4302542.3936968/1‑94 (MQ=60)
CGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAAT > SRR4302542.4212262/1‑94 (MQ=60)
GGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATA < SRR4302542.3102798/94‑1 (MQ=60)
GGCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATA < SRR4302542.2710111/94‑1 (MQ=60)
GCGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAA < SRR4302542.2086560/94‑1 (MQ=60)
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CAAAAATGATCAAACAAGGCCGTGGTGCAGTAGGGAAAGTCGGATTCAGTGCGATAACACAACGCCGTGCATTACTCAATATCACACTTTCCGACGGCAAAAAACTGCCCAGAGGCGTTGCGATTGAAGATAGTGAAGGCAACTATCTGACAACATCAGTGGATGACGGTGTTGTATTCCTCAATAA > NC_000913/3362513‑3362699
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
