Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,421,120 |
Δ1 bp |
noncoding (60/121 nt) |
rrfF ← |
5S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,421,119 | 0 | G | . | 96.1%
| 334.3
/ 8.9
| 129 | noncoding (61/121 nt) | rrfF | 5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base . (56/68); total (58/71) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-01 |
Only 100 of 137 total aligned reads displayed.
CAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAA > NC_000913/3421027‑3421207
|
aGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgt < 2:359710/93‑2 (MQ=39)
aGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgt < 2:1748716/93‑2 (MQ=39)
gTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgtt > 1:1284167/1‑91 (MQ=255)
gTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgtt < 2:510535/93‑3 (MQ=38)
gTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTAcggcgtt < 1:3025458/93‑3 (MQ=38)
tCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt < 1:1446249/93‑1 (MQ=37)
cTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGtttc < 1:7367566/93‑2 (MQ=25)
cTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGtttc < 1:3075616/93‑2 (MQ=25)
cTTCCGACTGAGCCCTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGtttc > 1:6342051/1‑92 (MQ=255)
ttCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCa > 1:6780059/1‑93 (MQ=255)
ttCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCa > 2:2133820/1‑93 (MQ=19)
ttCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCa > 2:2673105/1‑93 (MQ=255)
ttCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCa > 1:5250603/1‑93 (MQ=255)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc > 2:2077417/1‑93 (MQ=255)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc < 1:3862952/93‑1 (MQ=16)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc > 2:7396560/1‑93 (MQ=255)
tCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAc > 1:656208/1‑93 (MQ=255)
ccGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTCCTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACt < 2:3408762/93‑1 (MQ=255)
ccGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACt > 1:1974458/1‑93 (MQ=19)
cGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACtt < 2:3287609/93‑1 (MQ=9)
cGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACtt > 1:6017038/1‑93 (MQ=12)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc > 1:6307432/1‑93 (MQ=12)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc > 2:6373465/1‑93 (MQ=16)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc < 1:7220616/93‑1 (MQ=9)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc > 1:4391299/1‑93 (MQ=16)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc < 2:3222778/93‑1 (MQ=9)
gACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTc < 2:5354509/93‑1 (MQ=9)
aCTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCt < 2:71396/93‑1 (MQ=9)
aCTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCt > 2:1554199/1‑93 (MQ=16)
aCTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACCGC‑GCTTCACTTCt > 1:6865550/1‑93 (MQ=11)
cTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTg < 2:932659/93‑1 (MQ=9)
tGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGa < 1:4240391/93‑1 (MQ=9)
gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAg > 2:1826101/1‑93 (MQ=16)
gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAg < 2:771921/93‑1 (MQ=9)
gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAg < 1:915420/93‑1 (MQ=9)
aGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGt < 2:2983104/93‑1 (MQ=9)
aGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGt > 1:5471957/1‑93 (MQ=16)
aGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGt > 2:3398528/1‑93 (MQ=16)
gCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGtt > 1:937439/1‑93 (MQ=16)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc < 2:5858919/93‑1 (MQ=9)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc > 1:5998708/1‑93 (MQ=12)
ccTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTc < 2:150173/93‑1 (MQ=9)
cTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCg < 2:5918539/93‑1 (MQ=9)
cTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCg < 1:7123119/93‑1 (MQ=9)
cTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCg < 1:3483724/93‑1 (MQ=9)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 2:6116956/1‑93 (MQ=12)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 2:6538448/1‑93 (MQ=9)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 1:2405022/1‑93 (MQ=12)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 2:3963213/1‑93 (MQ=12)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 1:1165735/1‑93 (MQ=12)
ttttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCgg > 1:1271574/1‑93 (MQ=12)
tttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGc < 2:84685/93‑1 (MQ=9)
tttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGc > 2:2651138/1‑93 (MQ=12)
tttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGc < 1:5391521/93‑1 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa > 1:5079995/1‑93 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa > 1:1581593/1‑93 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa > 1:4388115/1‑93 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa > 1:6005530/1‑93 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa > 1:3220374/1‑93 (MQ=9)
ttGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCa < 1:6913641/93‑1 (MQ=0)
cccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 1:4668977/93‑1 (MQ=0)
cccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 2:4747572/93‑1 (MQ=9)
cccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 2:4320199/93‑1 (MQ=9)
cccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCttt < 1:2606577/93‑1 (MQ=9)
ccACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCtttt > 2:1253733/1‑93 (MQ=9)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt > 2:198421/1‑93 (MQ=16)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt < 2:5884054/93‑1 (MQ=19)
acacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCt > 2:3840979/1‑93 (MQ=16)
cacTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTa < 1:694433/93‑1 (MQ=255)
acTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTaa < 1:2398078/93‑1 (MQ=255)
acTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTaa < 1:1032782/93‑1 (MQ=255)
acTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTaa < 2:5740223/93‑1 (MQ=255)
cTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt < 2:5250603/93‑1 (MQ=255)
cTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAt < 1:5522603/93‑1 (MQ=255)
tACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATc < 1:375523/93‑1 (MQ=255)
aCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCt < 2:3986686/93‑1 (MQ=255)
aCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCt < 2:7332035/93‑1 (MQ=255)
aCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCt < 1:3619866/93‑1 (MQ=255)
aCCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCt < 1:1059050/93‑1 (MQ=255)
tCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCg > 2:4563833/1‑93 (MQ=255)
tCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCg > 2:5070442/1‑93 (MQ=255)
tCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCg > 2:3564031/1‑93 (MQ=255)
cGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGa > 2:1902608/1‑93 (MQ=255)
cGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGa < 2:5339162/93‑1 (MQ=255)
ggCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGaa < 2:4171299/93‑1 (MQ=255)
ggCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGaa < 2:2235143/93‑1 (MQ=255)
ggCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGaa < 1:6801910/93‑1 (MQ=255)
gcgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAc < 1:1041879/93‑1 (MQ=255)
gcgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAc > 2:6463359/1‑93 (MQ=255)
gcgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAc < 1:1613337/93‑1 (MQ=255)
cgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACt < 2:6626166/93‑1 (MQ=255)
cgcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACt < 1:3521407/93‑1 (MQ=255)
gcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACtt < 1:4809762/93‑1 (MQ=255)
gcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACtt > 1:4795115/1‑93 (MQ=255)
gcTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGCCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACtt < 2:6592025/93‑1 (MQ=255)
cTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACttt > 2:1982018/1‑93 (MQ=255)
cTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACttt > 1:2110141/1‑93 (MQ=255)
tACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTa < 2:6832771/93‑1 (MQ=255)
tACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTa < 2:948208/93‑1 (MQ=255)
aCGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTaa < 2:3399607/93‑1 (MQ=255)
|
CAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAA > NC_000913/3421027‑3421207
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > NC_000913/3421028‑3421213
|
AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTT > SRR4302542.1295222/1‑94 (MQ=34)
AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTT > SRR4302542.5906904/1‑94 (MQ=34)
GTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTT < SRR4302542.3054345/94‑1 (MQ=31)
TCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTC < SRR4302542.1458726/94‑1 (MQ=28)
TCTTCCGACTGAGCCCTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTC > SRR4302542.6404528/1‑94 (MQ=26)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCA > SRR4302542.6846753/1‑94 (MQ=22)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCA > SRR4302542.5301644/1‑94 (MQ=22)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCA < SRR4302542.3104918/94‑1 (MQ=22)
CTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCA < SRR4302542.7439716/94‑1 (MQ=22)
TTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAC > SRR4302542.661868/1‑94 (MQ=14)
TTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCAC < SRR4302542.65506/94‑1 (MQ=14)
TCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACT < SRR4302542.3901101/94‑1 (MQ=9)
TCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACT > SRR4302542.1991513/1‑94 (MQ=9)
CCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTT > SRR4302542.6075310/1‑94 (MQ=7)
CGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTC > SRR4302542.6369569/1‑94 (MQ=4)
CGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTC > SRR4302542.4434381/1‑94 (MQ=4)
GACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCT < SRR4302542.7291448/94‑1 (MQ=4)
GACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCT < SRR4302542.3906383/94‑1 (MQ=4)
GACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACCGC‑GCTTCACTTCT > SRR4302542.6933003/1‑94 (MQ=11)
ACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGggcacttgtg > SRR4302542.367707/1‑84 (MQ=30)
CTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGA > SRR4302542.3355119/1‑94 (MQ=4)
TGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAG < SRR4302542.4282189/94‑1 (MQ=4)
TGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAG > SRR4302542.2791951/1‑94 (MQ=4)
GAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGT > SRR4302542.5525121/1‑94 (MQ=4)
GAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGT < SRR4302542.923316/94‑1 (MQ=4)
AGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTT > SRR4302542.945514/1‑94 (MQ=4)
GCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTC > SRR4302542.6056805/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG < SRR4302542.3516314/94‑1 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG > SRR4302542.6097528/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG > SRR4302542.1175778/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG > SRR4302542.1282497/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG > SRR4302542.7297456/1‑94 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG < SRR4302542.7193035/94‑1 (MQ=4)
CTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGG > SRR4302542.2428427/1‑94 (MQ=4)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCA < SRR4302542.5443890/94‑1 (MQ=0)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCA > SRR4302542.5129367/1‑94 (MQ=0)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCA > SRR4302542.3250852/1‑94 (MQ=0)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCA > SRR4302542.1595246/1‑94 (MQ=0)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCA > SRR4302542.6063687/1‑94 (MQ=0)
TTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCA > SRR4302542.4431163/1‑94 (MQ=0)
TTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCAT < SRR4302542.706228/94‑1 (MQ=0)
TTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCAT < SRR4302542.191154/94‑1 (MQ=0)
CCCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTT < SRR4302542.5592183/94‑1 (MQ=0)
CCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTT < SRR4302542.4714617/94‑1 (MQ=0)
CCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTT < SRR4302542.3643640/94‑1 (MQ=0)
CCCACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTT < SRR4302542.2631782/94‑1 (MQ=0)
CACACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCT > SRR4302542.2373874/1‑94 (MQ=1)
CACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAA > SRR4302542.6200089/1‑94 (MQ=6)
CACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAA < SRR4302542.700435/94‑1 (MQ=6)
CACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAA > SRR4302542.3487757/1‑94 (MQ=6)
ACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAT > SRR4302542.6883497/1‑94 (MQ=9)
ACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAT < SRR4302542.1041667/94‑1 (MQ=9)
ACTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAAT < SRR4302542.2421320/94‑1 (MQ=9)
CTACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATC < SRR4302542.5576277/94‑1 (MQ=11)
TACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCT < SRR4302542.378793/94‑1 (MQ=20)
TACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCT > SRR4302542.4194677/1‑94 (MQ=20)
TACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCT > SRR4302542.1133293/1‑94 (MQ=20)
ACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTG < SRR4302542.3653589/94‑1 (MQ=22)
ACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTG > SRR4302542.215414/1‑94 (MQ=22)
ACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTG < SRR4302542.1068153/94‑1 (MQ=22)
ACCATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTG > SRR4302542.4558537/1‑94 (MQ=22)
ATCGGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTACTCTGCCG > SRR4302542.7303170/1‑94 (MQ=10)
GGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGCAC > SRR4302542.1151876/1‑94 (MQ=29)
GGCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAAC < SRR4302542.6868788/94‑1 (MQ=37)
GCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACT < SRR4302542.1050824/94‑1 (MQ=39)
GCGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACT < SRR4302542.1627276/94‑1 (MQ=39)
CGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTT > SRR4302542.4841842/1‑94 (MQ=41)
CGCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTT < SRR4302542.3554316/94‑1 (MQ=41)
GCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGCACTTT > SRR4302542.6214041/1‑94 (MQ=30)
GCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT < SRR4302542.4856615/94‑1 (MQ=44)
GCTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTT > SRR4302542.2128353/1‑94 (MQ=44)
CTACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTTTAATCTGCCGCACTTTA > SRR4302542.4041031/1‑94 (MQ=18)
ACGGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAAC < SRR4302542.144249/94‑1 (MQ=57)
GGC‑GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCT < SRR4302542.3279908/94‑1 (MQ=60)
gcGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTA < SRR4302542.7300403/92‑1 (MQ=60)
gcGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTA < SRR4302542.3746874/92‑1 (MQ=60)
CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAA > SRR4302542.2619517/1‑94 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA < SRR4302542.1120226/94‑1 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA < SRR4302542.1927535/94‑1 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > SRR4302542.436617/1‑94 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA < SRR4302542.4865950/94‑1 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > SRR4302542.5338963/1‑94 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA < SRR4302542.6496287/94‑1 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > SRR4302542.6145406/1‑94 (MQ=60)
GTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGACAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > SRR4302542.7496040/1‑94 (MQ=60)
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AGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAA > NC_000913/3421028‑3421213
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
