Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,537,405 |
+GC |
intergenic (+61/‑394) |
b3407 → / → feoA |
hypothetical protein/ferrous iron transport protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,537,404 | 1 | . | C | 100.0%
| 827.0
/ NA
| 248 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (110/138); total (110/138) |
| * | NC_000913 | 3,537,404 | 2 | . | G | 100.0%
| 829.1
/ NA
| 248 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (110/138); total (110/138) |
Only 100 of 260 total aligned reads displayed.
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
||
gcggTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑Ca > 1:6970658/1‑93 (MQ=255)
gcgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑Ca < 2:2167146/93‑1 (MQ=255)
gcgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑Ca < 2:5164837/93‑1 (MQ=255)
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CA‑‑c < 2:3331556/93‑1 (MQ=255)
cTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CA‑‑cgc < 1:3959809/93‑3 (MQ=255)
tGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CA‑‑cgcc < 1:3198269/93‑4 (MQ=255)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCaa > 1:1435403/1‑93 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCaacga > 2:4130715/1‑93 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGAAGATAAGGCGTT‑CACGCCGCATCTGGCaacga < 1:5269250/93‑1 (MQ=37)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCaacgaa < 1:7182481/93‑1 (MQ=37)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCaacgaac < 1:3426227/93‑1 (MQ=37)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCaacgaac < 1:4577380/93‑1 (MQ=38)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCaacgaacg > 2:1140181/1‑93 (MQ=37)
aaataCGTTAACCGCCCGTACTGGCCCACGGTGCGAATTTGCACGAAATGGTAGCGAAGATAAGGTGTT‑CACGCCGCATCTGGCAACGAACGc < 2:1297027/93‑1 (MQ=21)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGc > 2:3570401/1‑93 (MQ=37)
aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGcc < 1:2321791/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCt < 2:4019431/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCt > 2:3442568/1‑93 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCt < 2:1456380/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCt < 2:821995/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCt < 2:7229801/93‑1 (MQ=37)
aaaCGTTAAACGCCCGGACTGGCCTTCGGGTCGAATTTGCCCGGAAATGGAAGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCt < 2:619273/93‑1 (MQ=16)
gTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGcc > 1:76456/1‑93 (MQ=37)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCt < 1:6923267/93‑1 (MQ=37)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCt < 1:7374254/93‑1 (MQ=37)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCt < 1:5212385/93‑1 (MQ=37)
aaaCTCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGa > 2:3486289/1‑93 (MQ=37)
aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGa > 2:6902023/1‑93 (MQ=38)
aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGa > 2:6330513/1‑93 (MQ=38)
aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGAc > 2:1707788/1‑93 (MQ=38)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACa < 1:1570644/93‑1 (MQ=37)
cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaa > 1:4554367/1‑93 (MQ=37)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa > 1:515424/1‑93 (MQ=38)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa > 1:617582/1‑93 (MQ=38)
cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa > 1:3853191/1‑93 (MQ=38)
gtccTGGCCTACGGTTCGAATTTGCACAAAATCGTAGGGCAGATAAGGCGTC‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg < 1:2684078/90‑1 (MQ=37)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg < 1:2412437/93‑1 (MQ=37)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg > 1:4285927/1‑93 (MQ=38)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt < 2:4213602/93‑1 (MQ=37)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt > 2:5615224/1‑93 (MQ=38)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc < 2:6022971/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc > 2:2725471/1‑93 (MQ=38)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:7174130/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:6551381/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 2:4736647/93‑1 (MQ=37)
ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg < 1:7294278/93‑1 (MQ=37)
gCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg > 1:2607770/1‑93 (MQ=38)
ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGga < 2:2239844/93‑1 (MQ=37)
ctccGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAGAGTGCCGgag < 1:6788862/90‑1 (MQ=25)
cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag > 2:7341433/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 2:1877323/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 1:4904264/1‑93 (MQ=38)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga < 1:1226735/93‑1 (MQ=37)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGaa > 1:2555540/1‑93 (MQ=37)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 2:6742299/93‑1 (MQ=37)
aCGGTTCGAATTTGCACGAAATCATAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 2:6972963/93‑1 (MQ=37)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:82487/1‑93 (MQ=38)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 2:1917244/1‑93 (MQ=38)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata < 2:3778012/93‑1 (MQ=37)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata < 1:3569068/93‑1 (MQ=37)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:6323925/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 1:4472986/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 2:3718440/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 2:7155936/93‑1 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 2:7473063/93‑1 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 1:1108967/1‑93 (MQ=37)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc < 2:4640509/93‑1 (MQ=37)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc > 1:6649212/1‑93 (MQ=38)
tCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct < 2:5956731/93‑1 (MQ=37)
cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc < 2:2284770/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc > 1:1904133/1‑93 (MQ=38)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg < 1:2016276/93‑1 (MQ=37)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg < 2:6717943/93‑1 (MQ=37)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 2:4292072/1‑93 (MQ=38)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg < 2:3073535/93‑1 (MQ=37)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 1:5693217/1‑93 (MQ=38)
aTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCgg < 1:2849206/93‑1 (MQ=38)
tttGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc < 1:3474357/93‑1 (MQ=38)
tttGCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc < 2:2999231/93‑1 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 2:2753244/1‑93 (MQ=38)
cACGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt > 2:3278147/1‑93 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 1:3744241/93‑1 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 1:740099/93‑1 (MQ=38)
cGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttttt < 1:6453893/93‑1 (MQ=38)
cGAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttttt < 1:4036137/93‑1 (MQ=38)
gAAATCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa < 1:5907594/93‑1 (MQ=38)
aaTCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAtt < 2:3680519/93‑1 (MQ=38)
aTCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc < 2:5745503/93‑1 (MQ=38)
aTCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc < 1:2228995/93‑1 (MQ=38)
tCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc > 1:2747272/1‑93 (MQ=38)
tCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc < 2:5625841/93‑1 (MQ=38)
tCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc < 2:5485450/93‑1 (MQ=38)
tCGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc < 1:999199/93‑1 (MQ=38)
cGTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCca < 2:907834/93‑1 (MQ=38)
gTAGGGCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac > 2:5307447/1‑93 (MQ=38)
ggCAGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGcc > 2:2840157/1‑93 (MQ=38)
aGATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa > 2:659209/1‑93 (MQ=38)
gATAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc < 1:4918495/93‑1 (MQ=38)
tAAGGCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc > 1:1781498/1‑93 (MQ=39)
ggCGTT‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCata < 2:2403666/93‑1 (MQ=39)
||
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537313‑3537498
|
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑CG < SRR4302542.2342357/94‑1 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑Cgcc < SRR4302542.3998904/94‑4 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑Cgcc > SRR4302542.4559834/1‑91 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑Cgcc < SRR4302542.4443418/94‑4 (MQ=60)
TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑Cgccg < SRR4302542.3228552/94‑5 (MQ=60)
GGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATC > SRR4302542.3475820/1‑94 (MQ=60)
GGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATC > SRR4302542.4255129/1‑94 (MQ=60)
GGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATC > SRR4302542.4245575/1‑94 (MQ=60)
GGCGGCAATGGGAAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCCCGAAATCGTAGGGCAGATAAGGCTTT‑‑‑CACGCCGCATC < SRR4302542.1656017/94‑1 (MQ=60)
GCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCT < SRR4302542.1567321/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTG < SRR4302542.3449191/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTG < SRR4302542.5358861/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTG < SRR4302542.1862457/94‑1 (MQ=60)
GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGG < SRR4302542.1667257/94‑1 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCA > SRR4302542.6784459/1‑94 (MQ=60)
CAATGGGAAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCA < SRR4302542.3830027/94‑1 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAA < SRR4302542.3494425/94‑1 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAA > SRR4302542.1447798/1‑94 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAA > SRR4302542.7250844/1‑94 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAAC < SRR4302542.5258969/94‑1 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAAC < SRR4302542.6797490/94‑1 (MQ=60)
GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGA > SRR4302542.5598864/1‑94 (MQ=60)
GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGAAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAA < SRR4302542.5320451/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAAC < SRR4302542.7252915/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAAC < SRR4302542.2792334/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAAC < SRR4302542.3105464/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACG < SRR4302542.6021917/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACG < SRR4302542.3458316/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACG < SRR4302542.4622161/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACG < SRR4302542.4576896/94‑1 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGC > SRR4302542.7010538/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCC > SRR4302542.6388893/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCC < SRR4302542.7411213/94‑1 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGAAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCC > SRR4302542.7449914/1‑94 (MQ=60)
AAACCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCT < SRR4302542.6891609/94‑1 (MQ=60)
AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCT < SRR4302542.2341696/94‑1 (MQ=60)
CGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCC > SRR4302542.877721/1‑94 (MQ=60)
CGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCC > SRR4302542.77089/1‑94 (MQ=60)
GTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCT < SRR4302542.6592206/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302542.7446465/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302542.2812418/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302542.5263074/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302542.6991238/94‑1 (MQ=60)
ACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACAT < SRR4302542.1584209/94‑1 (MQ=60)
CGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATA > SRR4302542.2942473/1‑94 (MQ=60)
GCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAA > SRR4302542.4598931/1‑94 (MQ=60)
CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAA > SRR4302542.5760317/1‑94 (MQ=60)
CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAA > SRR4302542.622894/1‑94 (MQ=60)
CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAA > SRR4302542.519894/1‑94 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302542.3891254/1‑94 (MQ=60)
CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG > SRR4302542.4328079/1‑94 (MQ=60)
CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG < SRR4302542.7543560/94‑1 (MQ=60)
GTCCTGGCCTACGGTTCGAATTTGCACAAAATCGTAGGGCAGATAAGGCGTC‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302542.2709963/94‑1 (MQ=60)
GTACTGGCCTGCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302542.1807717/94‑1 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT > SRR4302542.4954471/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302542.2435892/94‑1 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT > SRR4302542.2476021/1‑94 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GC > SRR4302542.634070/1‑94 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCG < SRR4302542.7244503/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCG < SRR4302542.7216452/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCG < SRR4302542.6615969/94‑1 (MQ=60)
GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGG > SRR4302542.2632986/1‑94 (MQ=60)
GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGG < SRR4302542.1414363/94‑1 (MQ=60)
GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGG < SRR4302542.7365765/94‑1 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAG > SRR4302542.7126287/1‑94 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAG < SRR4302542.6031045/94‑1 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAG < SRR4302542.6898474/94‑1 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAG > SRR4302542.3721936/1‑94 (MQ=60)
CTCCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAGAGT‑GCCGGAGA < SRR4302542.6855635/94‑1 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGA > SRR4302542.4951968/1‑94 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGA > SRR4302542.4421773/1‑94 (MQ=60)
CTACGGTTCCAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGA > SRR4302542.2247701/1‑94 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGGGAA > SRR4302542.2580315/1‑94 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAA > SRR4302542.5005411/1‑94 (MQ=60)
aggggTCGAATTTGCACGAAATCGTAGGGCAGATATTGCGTT‑‑‑CACGCCGCATCTTGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAAT < SRR4302542.6781544/89‑1 (MQ=60)
ACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCCACG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAA < SRR4302542.1237288/94‑1 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATA > SRR4302542.6386244/1‑94 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATA > SRR4302542.83177/1‑94 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATA > SRR4302542.904470/1‑94 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATA < SRR4302542.1127143/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATAT > SRR4302542.1118454/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATAT < SRR4302542.6598382/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATAT > SRR4302542.4516858/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATAT < SRR4302542.1783132/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATAT < SRR4302542.3602381/94‑1 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATC > SRR4302542.6714739/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCC > SRR4302542.1806101/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCC > SRR4302542.1920590/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCC < SRR4302542.5521717/94‑1 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCG > SRR4302542.4619121/1‑94 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCG > SRR4302542.5748495/1‑94 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGG < SRR4302542.3506773/94‑1 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGG < SRR4302542.2033685/94‑1 (MQ=60)
ATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGC > SRR4302542.4023592/1‑94 (MQ=60)
ATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGC > SRR4302542.476121/1‑94 (MQ=60)
ATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGC < SRR4302542.2876598/94‑1 (MQ=60)
TTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCA < SRR4302542.3506881/94‑1 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATT > SRR4302542.5212616/1‑94 (MQ=60)
GCACGAAATCGTAGGGAAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTT < SRR4302542.6314341/94‑1 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTT > SRR4302542.2588767/1‑94 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTT < SRR4302542.3413865/94‑1 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTT < SRR4302542.3781292/94‑1 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTT < SRR4302542.746520/94‑1 (MQ=60)
CGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTA > SRR4302542.3752976/1‑94 (MQ=60)
CGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTA < SRR4302542.6517441/94‑1 (MQ=60)
CGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTA < SRR4302542.4075960/94‑1 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTAT < SRR4302542.5964844/94‑1 (MQ=60)
AAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATT < SRR4302542.2760794/94‑1 (MQ=60)
AAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATT < SRR4302542.21545/94‑1 (MQ=60)
AAATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCAGAGAATATCTCCGGCATTTTTATT < SRR4302542.4062085/94‑1 (MQ=60)
AATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTC < SRR4302542.4830588/94‑1 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302542.2672936/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302542.2773760/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCC < SRR4302542.3887298/94‑1 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCC < SRR4302542.2248175/94‑1 (MQ=60)
TCGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCA < SRR4302542.1007799/94‑1 (MQ=60)
CGTAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCAC < SRR4302542.3577966/94‑1 (MQ=60)
TAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAG < SRR4302542.1524533/94‑1 (MQ=60)
TAGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAG < SRR4302542.2032840/94‑1 (MQ=60)
AGGGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGC < SRR4302542.5078559/94‑1 (MQ=60)
GGCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCA < SRR4302542.3908815/94‑1 (MQ=60)
GCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA > SRR4302542.1299629/1‑94 (MQ=60)
GCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA < SRR4302542.7258495/94‑1 (MQ=60)
GCAGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA > SRR4302542.5266334/1‑94 (MQ=60)
AGATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC > SRR4302542.2655904/1‑94 (MQ=60)
GATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT > SRR4302542.7329778/1‑94 (MQ=60)
GATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302542.2376435/94‑1 (MQ=60)
GATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302542.4966323/94‑1 (MQ=60)
ATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTTCCTGACATAAAAGG‑GCCGGGGAAATTCTCCGGCATTTTTATTCCACAGCCAAACTC < SRR4302542.7475939/94‑1 (MQ=60)
ATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC < SRR4302542.6704356/94‑1 (MQ=60)
ATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302542.1796928/1‑94 (MQ=60)
ATAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302542.7430820/1‑94 (MQ=60)
agataggccgtccacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC < SRR4302542.2782010/78‑1 (MQ=60)
TAAGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCA > SRR4302542.798207/1‑94 (MQ=60)
AGGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA < SRR4302542.4236906/94‑1 (MQ=60)
GGCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA < SRR4302542.2263195/94‑1 (MQ=60)
GCGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAAT < SRR4302542.7483856/94‑1 (MQ=60)
CGTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA < SRR4302542.3627459/94‑1 (MQ=60)
GTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302542.2260333/94‑1 (MQ=60)
GTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302542.4492654/1‑94 (MQ=60)
GTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302542.4734988/94‑1 (MQ=60)
GTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302542.4301092/94‑1 (MQ=60)
GTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302542.6671664/1‑94 (MQ=60)
GTT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302542.3271635/94‑1 (MQ=60)
TT‑‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302542.4522668/94‑1 (MQ=60)
tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302542.2001915/89‑1 (MQ=60)
tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302542.553798/89‑1 (MQ=60)
tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302542.3303001/89‑1 (MQ=60)
cacgCCGCATCTGGCGACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT > SRR4302542.2955556/5‑94 (MQ=60)
cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGGCCGGGGAAATTTTCCGGCATTTTTTTTCCCCACCCAAACCCATAAT‑TATT > SRR4302542.6308030/5‑94 (MQ=33)
cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT < SRR4302542.1496593/90‑1 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302542.2083708/94‑1 (MQ=60)
acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC < SRR4302542.4184359/91‑1 (MQ=60)
acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC < SRR4302542.5055544/91‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302542.1621752/94‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302542.4737042/94‑1 (MQ=60)
CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG < SRR4302542.4906359/94‑1 (MQ=60)
CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > SRR4302542.3817897/1‑94 (MQ=60)
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CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT‑GCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537313‑3537498
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
