Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,554,118 |
+C |
coding (367/396 nt) |
yhgKJ ← |
RNA phosphage cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,554,117 | 1 | . | C | 100.0%
| 807.5
/ NA
| 245 | A123G (GCG→GGG) | yhgKJ | RNA phosphage cyclase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (145/100); total (145/100) |
Only 100 of 257 total aligned reads displayed.
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c > 2:955033/1‑93 (MQ=255)
tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c < 2:7095818/93‑1 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc > 2:4858598/1‑92 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgc > 1:5781734/1‑90 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgct > 1:5587255/1‑89 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgct > 1:4259140/1‑89 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc > 2:5305382/1‑93 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc > 1:3432080/1‑93 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt > 1:1031745/1‑93 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt > 2:6698460/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACtt > 2:7472349/1‑93 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCCCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTc < 1:478115/93‑1 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACttt > 2:1595295/1‑92 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTc < 2:5917976/93‑1 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTc > 2:2552719/1‑93 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTc > 2:480818/1‑93 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTc < 1:6303648/93‑1 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa > 2:635466/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa > 1:4251658/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa > 1:1310000/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa > 1:7037888/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa > 1:571397/1‑93 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCaa > 1:3781690/1‑93 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCaa < 1:6110297/93‑1 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCaa < 1:7401157/93‑1 (MQ=255)
aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAac > 2:4576698/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 1:5109581/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 1:1604477/1‑93 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac < 1:2513756/93‑1 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac > 1:2724089/1‑93 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac < 2:6133198/93‑1 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac > 1:2926158/1‑93 (MQ=255)
ccTATTTTCGCGAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGCCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc < 1:4823139/93‑1 (MQ=255)
ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc < 2:1153363/93‑1 (MQ=255)
ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc > 1:296237/1‑93 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa > 2:2931572/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg > 1:5276119/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg > 1:4582926/1‑93 (MQ=255)
tttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAgg < 1:856181/93‑1 (MQ=255)
ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGt < 2:6899529/93‑1 (MQ=255)
tCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTc < 2:2685875/93‑1 (MQ=255)
gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa > 2:3763845/1‑93 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt > 2:227856/1‑93 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATc < 2:418066/93‑1 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg < 2:5746508/93‑1 (MQ=255)
gcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg > 2:1711713/1‑93 (MQ=255)
gcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa > 1:7153762/1‑93 (MQ=255)
gcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa > 2:5225650/1‑93 (MQ=255)
cGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaaa < 2:3095842/93‑1 (MQ=255)
cGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaaa > 2:1268063/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc > 2:4146192/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc > 1:1854117/1‑93 (MQ=255)
cTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACca < 2:345756/93‑1 (MQ=255)
tCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac > 2:5371140/1‑93 (MQ=255)
tCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac < 2:1334679/93‑1 (MQ=255)
ccAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca < 1:4075912/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 1:2174717/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg > 2:3481424/1‑93 (MQ=255)
cACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcgc < 2:2077057/93‑1 (MQ=255)
aCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg > 2:5526830/1‑93 (MQ=255)
cccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg < 2:4401784/93‑1 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag > 2:2700572/1‑93 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag > 2:6850380/1‑93 (MQ=255)
gATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 2:7294432/1‑93 (MQ=255)
aTAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAcc > 1:6188051/1‑93 (MQ=255)
aTAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAcc < 1:6807977/93‑1 (MQ=255)
tAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCg > 1:6402171/1‑93 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt < 1:151378/93‑1 (MQ=255)
aaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 1:3692935/93‑1 (MQ=255)
aaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGttt < 2:2845061/93‑1 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc < 2:3926251/93‑1 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc > 1:6348103/1‑93 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc > 1:598482/1‑93 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc < 1:6257351/93‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa > 1:3485460/1‑93 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa > 1:1078039/1‑93 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 1:7141139/93‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 2:315197/93‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 2:5835839/93‑1 (MQ=255)
gcgcCGGCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCg < 1:1686026/93‑1 (MQ=255)
cgcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGt > 2:6627185/1‑93 (MQ=255)
cgcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGCCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGt < 2:6047366/93‑1 (MQ=255)
gcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTa < 2:4599682/93‑1 (MQ=255)
gcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTa < 2:1648604/93‑1 (MQ=255)
cGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa > 1:3134850/1‑93 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:1205338/1‑93 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:3371828/1‑93 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:6383790/1‑93 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc < 2:4464130/93‑1 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc < 2:6211973/93‑1 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc < 1:3966834/93‑1 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc < 1:4743153/93‑1 (MQ=255)
gggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACtt > 1:4901066/1‑93 (MQ=255)
ggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc > 2:4105174/1‑93 (MQ=255)
gTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCATCACCGTTTGCAGCACCAGCGTACAACTTcc > 2:853509/1‑93 (MQ=255)
ttATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCg < 1:1941144/93‑1 (MQ=255)
ttATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCg < 2:1909105/93‑1 (MQ=255)
tATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg > 2:6565086/1‑93 (MQ=255)
aTCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGgc > 1:6628716/1‑93 (MQ=255)
aTCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGgc > 1:7293268/1‑93 (MQ=255)
|
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > NC_000913/3554025‑3554211
|
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG‑C > SRR4302542.1740735/1‑94 (MQ=60)
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGTGCCGCCG‑C > SRR4302542.5837874/1‑94 (MQ=60)
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑GGCCG‑Ccg < SRR4302542.6223674/94‑3 (MQ=60)
TGCTAATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCA < SRR4302542.7516259/94‑1 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCAC > SRR4302542.3464214/1‑94 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACT > SRR4302542.1040626/1‑94 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACT < SRR4302542.5677751/94‑1 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACT > SRR4302542.6381502/1‑94 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACT > SRR4302542.6409366/1‑94 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACT > SRR4302542.2579967/1‑94 (MQ=60)
GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTC > SRR4302542.1533995/1‑94 (MQ=60)
GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTC > SRR4302542.3471758/1‑94 (MQ=60)
GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTC > SRR4302542.7273181/1‑94 (MQ=60)
GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCC‑GCTCACTTC > SRR4302542.450929/1‑94 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCCCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA < SRR4302542.482258/94‑1 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA > SRR4302542.7107015/1‑94 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA > SRR4302542.1321288/1‑94 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA > SRR4302542.4293538/1‑94 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA < SRR4302542.6365754/94‑1 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA > SRR4302542.576307/1‑94 (MQ=60)
AGGAATTCCTAGTGTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGG‑AGGCGGCGCCGCCGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCA < SRR4302542.4670057/94‑1 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAA > SRR4302542.3819100/1‑94 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAA > SRR4302542.6586329/1‑94 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAAC > SRR4302542.6863647/1‑94 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAAC < SRR4302542.6169429/94‑1 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAAC < SRR4302542.7473585/94‑1 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAAC > SRR4302542.6237362/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACA > SRR4302542.1618335/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACA > SRR4302542.6297906/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACA > SRR4302542.5159211/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACAC > SRR4302542.1638542/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACAC > SRR4302542.2750371/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACAC > SRR4302542.2954190/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACAC > SRR4302542.2368968/1‑94 (MQ=60)
TTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACG < SRR4302542.2538139/94‑1 (MQ=60)
TCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGC > SRR4302542.298825/1‑94 (MQ=60)
CCTATTTTCGCGAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGCCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCG < SRR4302542.4870146/94‑1 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCG > SRR4302542.7377797/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGCCGGGTTATCGG‑‑‑GGCCGCC‑GCTCACTTCAACACGCGAA > SRR4302542.1242555/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAA > SRR4302542.7499540/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAG < SRR4302542.4792094/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAG > SRR4302542.4352991/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAG > SRR4302542.4627765/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAG < SRR4302542.4861771/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAG > SRR4302542.5327389/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAG > SRR4302542.5696932/1‑94 (MQ=60)
TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGG < SRR4302542.1796525/94‑1 (MQ=60)
TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGG < SRR4302542.5391901/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGT < SRR4302542.863564/94‑1 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCC < SRR4302542.1962245/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCAT > SRR4302542.11496/1‑94 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCG < SRR4302542.6342494/94‑1 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCTTCGG < SRR4302542.7047120/94‑1 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGG > SRR4302542.7215500/1‑94 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGC > SRR4302542.4861361/1‑94 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGC > SRR4302542.5338395/1‑94 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGC < SRR4302542.2076431/94‑1 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGC > SRR4302542.5933782/1‑94 (MQ=60)
CAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCA < SRR4302542.3946571/94‑1 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAA > SRR4302542.6918512/1‑94 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAA > SRR4302542.4895430/1‑94 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAA > SRR4302542.4271644/1‑94 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAA > SRR4302542.7223944/1‑94 (MQ=60)
AGCGGCTCCAGCACCCCGCGGATAAAATCC‑GCAGGCGGAGCCGCCGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAA > SRR4302542.362720/1‑94 (MQ=60)
GCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGG‑‑‑GGCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAA < SRR4302542.4009396/94‑1 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACC > SRR4302542.1870150/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA > SRR4302542.6682434/1‑94 (MQ=60)
CCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG < SRR4302542.4116091/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302542.2193437/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302542.107058/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302542.6327949/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302542.3239611/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302542.7221529/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302542.3162242/94‑1 (MQ=60)
GCAGCCGGCGGAGAAAATCC‑GCAGGCGGCGCCGACGGGATATGGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGACCATCGGCAAAGCACAGCGC > SRR4302542.7345008/1‑94 (MQ=38)
GCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGC > SRR4302542.1907259/1‑94 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG < SRR4302542.1470210/94‑1 (MQ=60)
CGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302542.840367/1‑94 (MQ=60)
GCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGC < SRR4302542.2227994/94‑1 (MQ=60)
CGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA < SRR4302542.7169805/94‑1 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302542.4637384/1‑94 (MQ=60)
GATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC > SRR4302542.5973510/1‑94 (MQ=60)
GATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC > SRR4302542.6248176/1‑94 (MQ=60)
ATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG > SRR4302542.6465253/1‑94 (MQ=60)
ATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG < SRR4302542.6433669/94‑1 (MQ=60)
ATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG < SRR4302542.6874911/94‑1 (MQ=60)
AAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTT < SRR4302542.152663/94‑1 (MQ=60)
AAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT < SRR4302542.3560183/94‑1 (MQ=60)
AAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT < SRR4302542.3729486/94‑1 (MQ=60)
AATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG > SRR4302542.4921775/1‑94 (MQ=60)
AATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG > SRR4302542.4214126/1‑94 (MQ=60)
AATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG > SRR4302542.1765860/1‑94 (MQ=60)
ATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC > SRR4302542.5574038/1‑94 (MQ=60)
tccgcaagcgccccgcccggtttctccgtaacacC‑GCTCACTTCAAAGCGCGAAGGTCCATCGGCAAACCACAGCTCGGGCAGCACCGcgtgcg < SRR4302542.501293/60‑7 (MQ=54)
ccgcaggcggcgcagccgggttatcgaagccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCGCCGTTTGCAG < SRR4302542.5815854/61‑1 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC > SRR4302542.603640/1‑94 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC < SRR4302542.2833933/94‑1 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC < SRR4302542.158901/94‑1 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC < SRR4302542.5009205/94‑1 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC > SRR4302542.6410646/1‑94 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA > SRR4302542.1087301/1‑94 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA < SRR4302542.6319008/94‑1 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA > SRR4302542.3518067/1‑94 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA < SRR4302542.3465762/94‑1 (MQ=60)
GCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAG < SRR4302542.7211219/94‑1 (MQ=60)
GCGCCGGCGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGT < SRR4302542.1700623/94‑1 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA > SRR4302542.3164654/1‑94 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA < SRR4302542.4239109/94‑1 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302542.5261470/1‑94 (MQ=60)
GACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC > SRR4302542.4300755/1‑94 (MQ=60)
GACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC < SRR4302542.3024010/94‑1 (MQ=60)
ACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT < SRR4302542.4005998/94‑1 (MQ=60)
ACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT < SRR4302542.2858786/94‑1 (MQ=60)
ACGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT < SRR4302542.4789392/94‑1 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT > SRR4302542.2983440/1‑94 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT > SRR4302542.3805959/1‑94 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT < SRR4302542.6104891/94‑1 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT > SRR4302542.5139136/1‑94 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT > SRR4302542.4948702/1‑94 (MQ=60)
TTATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG < SRR4302542.1957930/94‑1 (MQ=60)
TATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > SRR4302542.7364750/1‑94 (MQ=60)
TATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > SRR4302542.6694069/1‑94 (MQ=60)
ATCGGT‑‑‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCG > SRR4302542.2968268/1‑94 (MQ=60)
cggtgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCT > SRR4302542.1257985/10‑94 (MQ=60)
cggtgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCT < SRR4302542.2441945/85‑1 (MQ=60)
ggtgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTA > SRR4302542.4232772/9‑94 (MQ=60)
ggtgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTA > SRR4302542.5083247/9‑94 (MQ=60)
gtgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTAC < SRR4302542.2953323/87‑1 (MQ=60)
tgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACC < SRR4302542.101743/88‑1 (MQ=60)
tgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACC < SRR4302542.6102614/88‑1 (MQ=60)
tgccgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACC > SRR4302542.3470079/7‑94 (MQ=60)
cgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGAT < SRR4302542.6267992/91‑1 (MQ=60)
cgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGAT > SRR4302542.7230666/4‑94 (MQ=60)
cgcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGAT > SRR4302542.3669278/4‑94 (MQ=60)
CG‑CAGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGAT > SRR4302542.5637178/1‑94 (MQ=60)
CC‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATA < SRR4302542.5536/94‑1 (MQ=60)
gcC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATA > SRR4302542.5456820/3‑94 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG > SRR4302542.747847/1‑94 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG > SRR4302542.5692990/1‑94 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG < SRR4302542.1918999/94‑1 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG < SRR4302542.2708418/94‑1 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG < SRR4302542.382326/94‑1 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG > SRR4302542.3810569/1‑94 (MQ=60)
C‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG < SRR4302542.3540028/94‑1 (MQ=60)
C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC < SRR4302542.1382042/94‑1 (MQ=60)
C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC < SRR4302542.2563527/94‑1 (MQ=60)
C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > SRR4302542.3953145/1‑94 (MQ=60)
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GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > NC_000913/3554025‑3554211
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
