Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,624,985 |
T→C |
I712V (ATC→GTC) |
yhiH ← |
putative ATP‑binding component of a transport system, fragment 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,624,985 | 0 | T | C | 77.3%
| 500.7
/ 171.3
| 282 | I712V (ATC→GTC) | yhiH | putative ATP‑binding component of a transport system, fragment 1 |
| Reads supporting (aligned to +/- strand): ref base T (30/34); new base C (86/132); total (116/166) |
| Fisher's exact test for biased strand distribution p-value = 3.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.66e-04 |
Only 100 of 310 total aligned reads displayed.
TTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATC > NC_000913/3624893‑3625076
|
ttCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGat > 2:1674585/1‑93 (MQ=255)
aCTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGatcat > 1:5385799/1‑93 (MQ=255)
aCTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGatcat < 1:962895/93‑1 (MQ=255)
aCTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccat > 1:5206831/1‑93 (MQ=255)
tACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccatca < 2:3232553/93‑1 (MQ=255)
tACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccatca < 2:696003/93‑1 (MQ=255)
tACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccatca < 2:5022097/93‑1 (MQ=255)
gtggtgGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATcagc < 1:3132780/93‑1 (MQ=255)
gtggtgGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATcagc < 1:2489105/93‑1 (MQ=255)
tggtggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATcagca < 1:1530203/93‑1 (MQ=255)
ggtggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATcagcag < 2:185145/93‑1 (MQ=255)
ggtggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATcagcag < 1:4831560/93‑1 (MQ=255)
tggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGaa < 1:7411910/93‑1 (MQ=255)
gggggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAg < 2:7137592/93‑1 (MQ=255)
gggggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAg < 2:6304383/93‑1 (MQ=255)
gggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCg < 1:5596278/93‑1 (MQ=255)
gggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCg < 1:2166146/93‑1 (MQ=255)
gTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCggg < 1:1357480/93‑1 (MQ=255)
gTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCggg > 1:2351565/1‑93 (MQ=255)
tCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGa < 2:4782297/93‑1 (MQ=255)
tCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGa < 1:7352258/93‑1 (MQ=255)
tCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGa > 2:5223813/1‑93 (MQ=255)
cACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAt < 2:2784016/93‑1 (MQ=255)
cACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAt < 2:753932/93‑1 (MQ=255)
cGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCa < 1:1017437/93‑1 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgc < 2:2336859/93‑1 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgc > 1:4654050/1‑93 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgc < 1:7069732/93‑1 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAccgc > 1:6789263/1‑93 (MQ=255)
aGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgcc > 1:6914214/1‑93 (MQ=255)
aGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgcc < 2:2028767/93‑1 (MQ=255)
aGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgcc > 2:4849817/1‑93 (MQ=255)
ggTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAccgccg < 1:492329/93‑1 (MQ=255)
ggTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAccgccg > 2:5698698/1‑93 (MQ=255)
tGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGaa < 1:4552550/93‑1 (MQ=255)
aTCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATc > 1:3756547/1‑93 (MQ=255)
gACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCt < 1:865719/93‑1 (MQ=255)
gACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCt < 2:2287064/93‑1 (MQ=255)
aCCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTg < 2:4141358/93‑1 (MQ=255)
cccAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTgg < 2:3881120/93‑1 (MQ=255)
cccAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTgg > 1:6272465/1‑93 (MQ=255)
ccAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGc > 2:5504700/1‑93 (MQ=255)
ccAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGc > 2:6857968/1‑93 (MQ=255)
ccAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGc > 1:3710636/1‑93 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa > 2:3866060/1‑93 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa < 2:6570408/93‑1 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa < 2:845689/93‑1 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa > 1:3250001/1‑93 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa > 1:6047717/1‑93 (MQ=255)
aaGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAg > 2:4004788/1‑93 (MQ=255)
aaGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAg > 2:1737202/1‑93 (MQ=255)
aaGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAg > 1:6133723/1‑93 (MQ=255)
aGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAgg < 1:648831/93‑1 (MQ=255)
tctTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtt > 1:4221220/1‑93 (MQ=255)
ctTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttt > 1:1884952/1‑93 (MQ=255)
ctTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttt < 2:3644650/93‑1 (MQ=255)
ctTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttt > 2:4912021/1‑93 (MQ=255)
ctTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttt > 1:3841271/1‑93 (MQ=255)
ttttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtttt < 2:5829777/93‑1 (MQ=255)
ttttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtttt < 1:5714562/93‑1 (MQ=255)
ttttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtttt < 2:2465907/93‑1 (MQ=255)
ttttTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttttt < 1:1691917/93‑1 (MQ=255)
ttttTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttttt < 2:3556180/93‑1 (MQ=255)
ttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTa < 2:4710522/93‑1 (MQ=255)
ttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTa < 1:3464605/93‑1 (MQ=255)
ccGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTc < 2:5093457/93‑1 (MQ=255)
cGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTcc < 1:6734779/93‑1 (MQ=255)
gCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCg < 2:1153991/93‑1 (MQ=255)
gCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCg < 2:1529501/93‑1 (MQ=255)
gCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCg > 1:363717/1‑93 (MQ=255)
gCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCg > 2:2237111/1‑93 (MQ=255)
caccacGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCgg < 2:5757931/93‑1 (MQ=255)
caccacGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCgg < 2:6495157/93‑1 (MQ=255)
cacGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGtt < 1:6687458/93‑1 (MQ=255)
cGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTtat < 2:7045410/93‑1 (MQ=255)
gCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTtata < 2:5974028/93‑1 (MQ=255)
cTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatag < 2:6158191/93‑1 (MQ=255)
cTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatag > 1:5286485/1‑93 (MQ=255)
tAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagc > 2:7410849/1‑93 (MQ=255)
tAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagc > 1:4422358/1‑93 (MQ=255)
gggCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagcgat < 1:5649011/93‑1 (MQ=255)
ggCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagcgata < 2:445418/93‑1 (MQ=255)
cgcTTAGCATTGGCGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagcgatagc < 1:7501867/93‑1 (MQ=255)
cgcTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagcgatagc < 2:5619165/93‑1 (MQ=255)
cgcTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagcgatagc > 2:4117012/1‑93 (MQ=255)
gcTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTatagagatagcg > 2:3442145/1‑93 (MQ=255)
ttAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGcgcg > 1:5036782/1‑93 (MQ=255)
ttAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGcgcg > 1:5996445/1‑93 (MQ=255)
ttAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGcgcg > 2:4316199/1‑93 (MQ=255)
cATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGtctc < 2:7259256/93‑1 (MQ=255)
cATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGtctc < 1:391441/93‑1 (MQ=255)
ttGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCaa < 2:134784/93‑1 (MQ=255)
ttGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCaa > 2:6635659/1‑93 (MQ=255)
ttGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCaa < 1:7120749/93‑1 (MQ=255)
gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAata < 1:297054/93‑1 (MQ=255)
gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAata > 1:2102973/1‑93 (MQ=255)
gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAata > 1:1229058/1‑93 (MQ=255)
gggACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATtc > 2:4365776/1‑93 (MQ=255)
ggACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATtca > 2:4626218/1‑93 (MQ=255)
ggACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATtca < 1:405799/93‑1 (MQ=255)
|
TTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATC > NC_000913/3624893‑3625076
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCAG > NC_000913/3624892‑3625078
|
ATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGAC > SRR4302542.7246701/1‑94 (MQ=60)
ATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGAC > SRR4302542.4073811/1‑94 (MQ=60)
TTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACC > SRR4302542.5002967/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCAT > SRR4302542.5438114/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT < SRR4302542.7112489/94‑1 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT > SRR4302542.3219699/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT > SRR4302542.3566141/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT > SRR4302542.5257468/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT < SRR4302542.4657573/94‑1 (MQ=60)
ACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATC < SRR4302542.971165/94‑1 (MQ=60)
ACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATC < SRR4302542.3472530/94‑1 (MQ=60)
ACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATC < SRR4302542.7376975/94‑1 (MQ=60)
ACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATC < SRR4302542.5057425/94‑1 (MQ=60)
CGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGC < SRR4302542.2500059/94‑1 (MQ=60)
GTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCA > SRR4302542.3978297/1‑94 (MQ=60)
GTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCA < SRR4302542.3162569/94‑1 (MQ=60)
GTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCA < SRR4302542.2513255/94‑1 (MQ=60)
TGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAG < SRR4302542.1543416/94‑1 (MQ=60)
TGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAG < SRR4302542.7020592/94‑1 (MQ=60)
GGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGA < SRR4302542.4878631/94‑1 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAG > SRR4302542.6194594/1‑94 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG > SRR4302542.6880161/1‑94 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG < SRR4302542.7484452/94‑1 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG > SRR4302542.5805857/1‑94 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG < SRR4302542.3584031/94‑1 (MQ=60)
GGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGC < SRR4302542.3803378/94‑1 (MQ=60)
GGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGC < SRR4302542.2616806/94‑1 (MQ=60)
GGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGC > SRR4302542.6439018/1‑94 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG < SRR4302542.2184801/94‑1 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG < SRR4302542.5650656/94‑1 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG > SRR4302542.2889126/1‑94 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG < SRR4302542.3941999/94‑1 (MQ=60)
GGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGG > SRR4302542.2371755/1‑94 (MQ=60)
GTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGA < SRR4302542.1369207/94‑1 (MQ=60)
TCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAT < SRR4302542.7424253/94‑1 (MQ=60)
TCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAT < SRR4302542.4230311/94‑1 (MQ=60)
CACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATC > SRR4302542.5840321/1‑94 (MQ=60)
CGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAC > SRR4302542.6863919/1‑94 (MQ=60)
CGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAC < SRR4302542.5749646/94‑1 (MQ=60)
CGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAC < SRR4302542.1026200/94‑1 (MQ=60)
GTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACC > SRR4302542.4687705/1‑94 (MQ=60)
GTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACC < SRR4302542.3789870/94‑1 (MQ=60)
GTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACC > SRR4302542.5133716/1‑94 (MQ=60)
TAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCG < SRR4302542.5317692/94‑1 (MQ=60)
AAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGC > SRR4302542.4699551/1‑94 (MQ=60)
AAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGC > SRR4302542.6856037/1‑94 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCC > SRR4302542.6982090/1‑94 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCC < SRR4302542.7139120/94‑1 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCC > SRR4302542.2005112/1‑94 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCC < SRR4302542.5768941/94‑1 (MQ=60)
AGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCG > SRR4302542.5339172/1‑94 (MQ=60)
GGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGG < SRR4302542.496575/94‑1 (MQ=60)
GTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGA > SRR4302542.6344974/1‑94 (MQ=60)
TGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAAC < SRR4302542.4597099/94‑1 (MQ=60)
TGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAAC < SRR4302542.1656315/94‑1 (MQ=60)
ATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAA > SRR4302542.3017146/1‑94 (MQ=60)
ATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAA > SRR4302542.844588/1‑94 (MQ=60)
AATCGACCCAAGCTCTTTTTTCCGCACCGCGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATC > SRR4302542.5693817/1‑94 (MQ=60)
AATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATC < SRR4302542.6829976/94‑1 (MQ=60)
AATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATC > SRR4302542.3793715/1‑94 (MQ=60)
ATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCG < SRR4302542.316661/94‑1 (MQ=60)
ATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCG < SRR4302542.1700510/94‑1 (MQ=60)
ATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCG > SRR4302542.1359299/1‑94 (MQ=60)
TCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGC < SRR4302542.2129832/94‑1 (MQ=60)
CGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCT < SRR4302542.1788788/94‑1 (MQ=60)
CGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCT < SRR4302542.1706702/94‑1 (MQ=60)
CGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCT < SRR4302542.5650191/94‑1 (MQ=60)
GACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTG < SRR4302542.873177/94‑1 (MQ=60)
ACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGG < SRR4302542.2959058/94‑1 (MQ=60)
ACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGG > SRR4302542.6334292/1‑94 (MQ=60)
CCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGC > SRR4302542.5503802/1‑94 (MQ=60)
CCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGC > SRR4302542.2151376/1‑94 (MQ=60)
CCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGC > SRR4302542.3747346/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.3876871/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.3746999/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.6106253/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.3280710/1‑94 (MQ=60)
CAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAG > SRR4302542.6223881/1‑94 (MQ=60)
CAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAG > SRR4302542.6193065/1‑94 (MQ=60)
AAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGG < SRR4302542.2054251/94‑1 (MQ=60)
AAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGG > SRR4302542.2350190/1‑94 (MQ=60)
AGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGC < SRR4302542.654393/94‑1 (MQ=60)
GCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCT > SRR4302542.830589/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT > SRR4302542.4590151/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT > SRR4302542.4941304/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT > SRR4302542.4262816/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT < SRR4302542.5096095/94‑1 (MQ=60)
TCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTT > SRR4302542.3975631/1‑94 (MQ=60)
TCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTT > SRR4302542.1901274/1‑94 (MQ=60)
TCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTT > SRR4302542.3879245/1‑94 (MQ=60)
CTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTT > SRR4302542.1516751/1‑94 (MQ=60)
CTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTT > SRR4302542.1088776/1‑94 (MQ=60)
CTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTT > SRR4302542.3915708/1‑94 (MQ=60)
TTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTT < SRR4302542.5770028/94‑1 (MQ=60)
TTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTT < SRR4302542.2198878/94‑1 (MQ=60)
TTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTA < SRR4302542.1706567/94‑1 (MQ=60)
TTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC < SRR4302542.3497052/94‑1 (MQ=60)
TTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC > SRR4302542.377015/1‑94 (MQ=60)
TTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC < SRR4302542.3051485/94‑1 (MQ=60)
TTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG < SRR4302542.3465485/94‑1 (MQ=60)
TTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG < SRR4302542.3691602/94‑1 (MQ=60)
TTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG < SRR4302542.6093326/94‑1 (MQ=60)
CGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCG < SRR4302542.6595526/94‑1 (MQ=60)
CGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCG > SRR4302542.366879/1‑94 (MQ=60)
CGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCG < SRR4302542.4825079/94‑1 (MQ=60)
CGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCG < SRR4302542.6801072/94‑1 (MQ=60)
GCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGG > SRR4302542.4114761/1‑94 (MQ=60)
CACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGG < SRR4302542.5486906/94‑1 (MQ=60)
CACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGG > SRR4302542.6612466/1‑94 (MQ=60)
ACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGT < SRR4302542.715059/94‑1 (MQ=60)
ACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGT > SRR4302542.6809315/1‑94 (MQ=60)
CCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTT < SRR4302542.4876654/94‑1 (MQ=60)
CACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTA < SRR4302542.6753331/94‑1 (MQ=60)
ACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTAT < SRR4302542.4275604/94‑1 (MQ=60)
CGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATA > SRR4302542.925503/1‑94 (MQ=60)
GCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAG < SRR4302542.6180911/94‑1 (MQ=60)
GCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAG > SRR4302542.5337879/1‑94 (MQ=60)
CTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCTCCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGC < SRR4302542.7351287/94‑1 (MQ=60)
CTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGC > SRR4302542.4465792/1‑94 (MQ=60)
CTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGC > SRR4302542.5031567/1‑94 (MQ=60)
TAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCG > SRR4302542.5291030/1‑94 (MQ=60)
TAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCG < SRR4302542.5437794/94‑1 (MQ=60)
TAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCG < SRR4302542.4262917/94‑1 (MQ=60)
AGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGAT < SRR4302542.1537508/94‑1 (MQ=60)
AGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGAT > SRR4302542.7472722/1‑94 (MQ=60)
AGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGAT < SRR4302542.6080802/94‑1 (MQ=60)
GGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATA < SRR4302542.5703863/94‑1 (MQ=60)
GGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAG < SRR4302542.242444/94‑1 (MQ=60)
CGCTTAGCATTGGCGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCG < SRR4302542.7575659/94‑1 (MQ=60)
GCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGC < SRR4302542.6780936/94‑1 (MQ=60)
GCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGC < SRR4302542.7520210/94‑1 (MQ=60)
GCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGC < SRR4302542.7538378/94‑1 (MQ=60)
CTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCG > SRR4302542.5085681/1‑94 (MQ=60)
CTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCG > SRR4302542.6054522/1‑94 (MQ=60)
CTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCG < SRR4302542.5672046/94‑1 (MQ=60)
AGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCT < SRR4302542.1265463/94‑1 (MQ=60)
AGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCT > SRR4302542.6110666/1‑94 (MQ=60)
CATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCA < SRR4302542.394824/94‑1 (MQ=60)
ATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAA > SRR4302542.921272/1‑94 (MQ=60)
ATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAA > SRR4302542.4537193/1‑94 (MQ=60)
ATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAA < SRR4302542.979943/94‑1 (MQ=60)
TTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAAT < SRR4302542.7190641/94‑1 (MQ=60)
TGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATA > SRR4302542.1239629/1‑94 (MQ=60)
TGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATA > SRR4302542.2121123/1‑94 (MQ=60)
TGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATA > SRR4302542.6855733/1‑94 (MQ=60)
GACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATAT < SRR4302542.299650/94‑1 (MQ=60)
GACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAGCAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATAT < SRR4302542.6773841/94‑1 (MQ=60)
CGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTC < SRR4302542.4947154/94‑1 (MQ=60)
GGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCA < SRR4302542.7168636/94‑1 (MQ=60)
GGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCAT < SRR4302542.4222338/94‑1 (MQ=60)
GGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCAT < SRR4302542.108847/94‑1 (MQ=60)
GGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCAT < SRR4302542.409307/94‑1 (MQ=60)
GATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATC > SRR4302542.7438976/1‑94 (MQ=60)
GACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATC > SRR4302542.452331/1‑94 (MQ=60)
GACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATC < SRR4302542.4053957/94‑1 (MQ=60)
GACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATC < SRR4302542.1539807/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATGGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.4027116/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.4135514/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.5022677/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.1660520/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.934997/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.6352174/94‑1 (MQ=60)
ACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCA < SRR4302542.7003883/94‑1 (MQ=60)
CCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCAG > SRR4302542.7051868/1‑94 (MQ=60)
CCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCAG < SRR4302542.4549332/94‑1 (MQ=60)
|
ATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCAG > NC_000913/3624892‑3625078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
