Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,694,167 C→T G27G (GGC→GGT)  yhjS → putative protease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,694,1670CT84.3% 727.6 / 95.5 286G27G (GGC→GGT) yhjSputative protease
Reads supporting (aligned to +/- strand):  ref base C (29/16);  new base T (126/115);  total (155/131)
Fisher's exact test for biased strand distribution p-value = 1.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.10e-03

Only 100 of 291 total aligned reads displayed.

AAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGC  >  NC_000913/3694077‑3694256
                                                                                          |                                                                                         
aaaTGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGgtgt                                                                                         <  1:1221327/93‑1 (MQ=255)
  aTGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCt                                                                                       <  2:3235621/93‑1 (MQ=255)
   tGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCtg                                                                                      <  2:6266606/93‑1 (MQ=255)
   tGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCtg                                                                                      <  2:1126686/93‑1 (MQ=255)
     gTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCtggt                                                                                    <  2:4369922/93‑1 (MQ=255)
     gTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCtggt                                                                                    >  1:5091935/1‑93 (MQ=255)
       gACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCtggtgg                                                                                  <  2:37878/93‑1 (MQ=255)
       gACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCtggtgg                                                                                  <  2:3364240/93‑1 (MQ=255)
        aCATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTggtggt                                                                                 <  1:1897860/93‑1 (MQ=255)
          aTGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGttt                                                                               <  1:7316490/93‑1 (MQ=255)
           tGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTa                                                                              >  2:1303043/1‑93 (MQ=255)
            gAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTaa                                                                             <  2:6440314/93‑1 (MQ=255)
               ggACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGt                                                                          >  1:625812/1‑93 (MQ=255)
               ggACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGt                                                                          <  2:602420/93‑1 (MQ=255)
                gACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTc                                                                         >  2:4703283/1‑93 (MQ=255)
                 aCATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCg                                                                        <  1:4368732/93‑1 (MQ=255)
                   aTTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGAt                                                                      <  1:5972610/93‑1 (MQ=255)
                   aTTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGCTTAACGTCGAt                                                                      >  2:4263242/1‑93 (MQ=255)
                    ttGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATc                                                                     <  1:68067/93‑1 (MQ=255)
                    ttGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATc                                                                     <  1:642014/93‑1 (MQ=255)
                    ttGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATc                                                                     >  1:7072298/1‑93 (MQ=255)
                         gACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCAt                                                                <  1:3994906/93‑1 (MQ=255)
                         gACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCAt                                                                <  2:3957202/93‑1 (MQ=255)
                          aCCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATg                                                               >  2:1548453/1‑93 (MQ=255)
                           cccTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGa                                                              >  1:214733/1‑93 (MQ=255)
                            ccTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGaa                                                             <  2:2342903/93‑1 (MQ=255)
                            ccTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGaa                                                             >  2:276989/1‑93 (MQ=255)
                             cTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAg                                                            >  1:4093808/1‑93 (MQ=255)
                              tGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGa                                                           >  1:7487069/1‑93 (MQ=255)
                              tGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGa                                                           <  1:2905137/93‑1 (MQ=255)
                              tGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGa                                                           <  1:1294154/93‑1 (MQ=255)
                              tGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGAGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGa                                                           <  2:4525713/93‑1 (MQ=255)
                               gTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAt                                                          >  1:5471949/1‑93 (MQ=255)
                               gTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAt                                                          >  1:6126710/1‑93 (MQ=255)
                                tATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATg                                                         <  1:1647882/93‑1 (MQ=255)
                                 aTTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGc                                                        <  2:5656879/93‑1 (MQ=255)
                                  ttCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCt                                                       >  1:1988359/1‑93 (MQ=255)
                                   tctcTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTa                                                      >  1:5589269/1‑93 (MQ=255)
                                    ctctATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTAt                                                     <  1:172824/93‑1 (MQ=255)
                                     tctATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATc                                                    <  1:2568927/93‑1 (MQ=255)
                                      ctATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCa                                                   >  2:3314736/1‑93 (MQ=255)
                                       tATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAg                                                  >  2:139111/1‑93 (MQ=255)
                                        aTCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGt                                                 >  1:7169727/1‑93 (MQ=255)
                                        aTCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGt                                                 >  2:1796391/1‑93 (MQ=255)
                                        aTCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGt                                                 >  2:1194864/1‑93 (MQ=255)
                                         tCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTc                                                >  1:3909324/1‑93 (MQ=255)
                                         tCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTc                                                <  2:1990745/93‑1 (MQ=255)
                                          cGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCt                                               <  2:4918028/93‑1 (MQ=255)
                                           ggTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTg                                              >  1:6900305/1‑93 (MQ=255)
                                            gTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTgg                                             >  1:5669082/1‑93 (MQ=255)
                                             tATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGc                                            <  2:2537551/93‑1 (MQ=255)
                                             tATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGc                                            >  1:2250458/1‑93 (MQ=255)
                                              aTCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCg                                           >  1:1112339/1‑93 (MQ=255)
                                              aTCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCg                                           >  2:4096953/1‑93 (MQ=255)
                                               tctcATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGa                                          >  2:2151299/1‑93 (MQ=255)
                                               tctcATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGa                                          >  1:2812859/1‑93 (MQ=255)
                                               tctcATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGa                                          >  1:5055208/1‑93 (MQ=255)
                                                ctcATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGaa                                         <  2:5057094/93‑1 (MQ=255)
                                                 tcatcaTTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAAt                                        >  2:3485892/1‑93 (MQ=255)
                                                 tcatcaTTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAAt                                        >  2:7298492/1‑93 (MQ=255)
                                                  catcatTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATc                                       >  2:6922123/1‑93 (MQ=255)
                                                    tcatTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCaa                                     >  1:5186351/1‑93 (MQ=255)
                                                    tcatTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCaa                                     >  2:7388695/1‑93 (MQ=255)
                                                     catTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCaaa                                    >  2:5202025/1‑93 (MQ=255)
                                                     catTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCaaa                                    <  1:5921904/93‑1 (MQ=255)
                                                       ttATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACa                                  >  2:6482706/1‑93 (MQ=255)
                                                        tATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACaa                                 <  2:1029322/93‑1 (MQ=255)
                                                         aTGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAAt                                >  1:1258964/1‑93 (MQ=255)
                                                         aTGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAAt                                >  2:421930/1‑93 (MQ=255)
                                                          tGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAAtt                               >  2:67410/1‑93 (MQ=255)
                                                           gggATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTg                              >  2:4037526/1‑93 (MQ=255)
                                                            ggATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGc                             <  1:3025121/93‑1 (MQ=255)
                                                            ggATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGc                             <  1:4715000/93‑1 (MQ=255)
                                                             gATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCa                            <  2:7183469/93‑1 (MQ=255)
                                                             gATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCa                            <  2:793227/93‑1 (MQ=255)
                                                              aTGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCAt                           <  2:5122724/93‑1 (MQ=255)
                                                               tGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATc                          >  2:2687129/1‑93 (MQ=255)
                                                               tGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATc                          >  2:312144/1‑93 (MQ=255)
                                                               tGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATc                          >  1:3788837/1‑93 (MQ=255)
                                                               tGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATc                          <  2:7492265/93‑1 (MQ=255)
                                                                  gCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCa                       >  1:5798290/1‑93 (MQ=255)
                                                                  gCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCa                       <  2:6637690/93‑1 (MQ=255)
                                                                   cTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAg                      <  1:887996/93‑1 (MQ=255)
                                                                   cTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAg                      <  1:6080140/93‑1 (MQ=255)
                                                                    tGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAgg                     >  2:1840034/1‑93 (MQ=255)
                                                                     gCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGc                    <  1:5282531/93‑1 (MQ=255)
                                                                       gACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTg                  >  1:6602630/1‑93 (MQ=255)
                                                                       gACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTg                  >  1:5680241/1‑93 (MQ=255)
                                                                        aCATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGa                 <  1:3682814/93‑1 (MQ=255)
                                                                           tatGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAAc              <  2:5468159/93‑1 (MQ=255)
                                                                           tatGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAAc              <  2:894120/93‑1 (MQ=255)
                                                                           tatGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAAc              >  1:2543679/1‑93 (MQ=255)
                                                                                 agcagGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGcaca        <  2:3606184/93‑1 (MQ=255)
                                                                                  gcagGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCacac       <  1:3368783/93‑1 (MQ=255)
                                                                                  gcagGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCacac       <  1:3160470/93‑1 (MQ=255)
                                                                                  gcagGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCacac       >  1:1475320/1‑93 (MQ=255)
                                                                                   cagGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACg      >  2:833727/1‑93 (MQ=255)
                                                                                    agGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGt     >  2:1668470/1‑93 (MQ=255)
                                                                                       cggtgTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTcgc  <  1:3318024/93‑1 (MQ=255)
                                                                                       cggcgTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTcgc  <  1:4930361/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGC  >  NC_000913/3694077‑3694256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAAAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCGGT  >  NC_000913/3694074‑3694259
                                                                                             |                                                                                            
ACAAAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGT                                                                                              <  SRR4302542.636086/94‑1 (MQ=60)
 CAAAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTG                                                                                             >  SRR4302542.4260086/1‑94 (MQ=60)
  AAAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGT                                                                                            >  SRR4302542.1600771/1‑94 (MQ=60)
   AAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTC                                                                                           <  SRR4302542.1231836/94‑1 (MQ=60)
      TGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGG                                                                                        >  SRR4302542.859914/1‑94 (MQ=60)
       GGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGT                                                                                       <  SRR4302542.3385093/94‑1 (MQ=60)
       GGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGT                                                                                       >  SRR4302542.5141422/1‑94 (MQ=60)
         TGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGG                                                                                     <  SRR4302542.1663422/94‑1 (MQ=60)
          GACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGT                                                                                    >  SRR4302542.5681138/1‑94 (MQ=60)
          GACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGGATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGT                                                                                    >  SRR4302542.2395540/1‑94 (MQ=60)
           ACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTT                                                                                   <  SRR4302542.1914275/94‑1 (MQ=60)
            CATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTT                                                                                  >  SRR4302542.3991675/1‑94 (MQ=60)
             ATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTA                                                                                 >  SRR4302542.2169350/1‑94 (MQ=60)
             ATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTA                                                                                 <  SRR4302542.7388160/94‑1 (MQ=60)
             ATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTA                                                                                 >  SRR4302542.6327440/1‑94 (MQ=60)
             ATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTA                                                                                 >  SRR4302542.5275770/1‑94 (MQ=60)
             ATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTA                                                                                 >  SRR4302542.3563967/1‑94 (MQ=60)
              TGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAA                                                                                >  SRR4302542.6585221/1‑94 (MQ=60)
               GAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAAC                                                                               >  SRR4302542.5830723/1‑94 (MQ=60)
                 GGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGT                                                                             >  SRR4302542.631199/1‑94 (MQ=60)
                   GACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCG                                                                           >  SRR4302542.3750449/1‑94 (MQ=60)
                    ACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGA                                                                          <  SRR4302542.4411615/94‑1 (MQ=60)
                    ACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGA                                                                          <  SRR4302542.3204245/94‑1 (MQ=60)
                     CATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGAT                                                                         >  SRR4302542.2944181/1‑94 (MQ=60)
                      ATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATC                                                                        >  SRR4302542.6414723/1‑94 (MQ=60)
                      ATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATC                                                                        >  SRR4302542.7141703/1‑94 (MQ=60)
                      ATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATC                                                                        <  SRR4302542.6030417/94‑1 (MQ=60)
                      ATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATC                                                                        <  SRR4302542.2847330/94‑1 (MQ=60)
                       TTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCG                                                                       <  SRR4302542.647532/94‑1 (MQ=60)
                       TTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCG                                                                       <  SRR4302542.68638/94‑1 (MQ=60)
                       TTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCG                                                                       <  SRR4302542.4126408/94‑1 (MQ=60)
                         GTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCC                                                                     >  SRR4302542.1338559/1‑94 (MQ=60)
                           GGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCAT                                                                   <  SRR4302542.7313569/94‑1 (MQ=60)
                            GACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATG                                                                  <  SRR4302542.4034312/94‑1 (MQ=60)
                            GACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATG                                                                  >  SRR4302542.6073668/1‑94 (MQ=60)
                             ACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGA                                                                 >  SRR4302542.216580/1‑94 (MQ=60)
                             ACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGA                                                                 >  SRR4302542.4771914/1‑94 (MQ=60)
                               CCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAG                                                               >  SRR4302542.583322/1‑94 (MQ=60)
                               CCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAG                                                               >  SRR4302542.4134191/1‑94 (MQ=60)
                               CCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAG                                                               <  SRR4302542.313197/94‑1 (MQ=60)
                                CTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGA                                                              >  SRR4302542.7560492/1‑94 (MQ=60)
                                 TGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAT                                                             >  SRR4302542.6185991/1‑94 (MQ=60)
                                 TGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAT                                                             <  SRR4302542.2573279/94‑1 (MQ=60)
                                 TGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAT                                                             <  SRR4302542.2933012/94‑1 (MQ=60)
                                 TGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAT                                                             <  SRR4302542.1305299/94‑1 (MQ=60)
                                 TGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAT                                                             >  SRR4302542.5525113/1‑94 (MQ=60)
                                 TGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGAT                                                             <  SRR4302542.7537164/94‑1 (MQ=60)
                                  GTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATG                                                            >  SRR4302542.5279397/1‑94 (MQ=60)
                                   TATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGC                                                           >  SRR4302542.4832642/1‑94 (MQ=60)
                                   TATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGC                                                           <  SRR4302542.1662126/94‑1 (MQ=60)
                                    ATTCTCTATCGGTATCTCGTCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCT                                                          <  SRR4302542.206355/94‑1 (MQ=60)
                                    ATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCT                                                          >  SRR4302542.5175890/1‑94 (MQ=60)
                                    ATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCT                                                          >  SRR4302542.6983853/1‑94 (MQ=60)
                                    ATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCT                                                          >  SRR4302542.2005512/1‑94 (MQ=60)
                                    ATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCT                                                          >  SRR4302542.5153087/1‑94 (MQ=60)
                                     TTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTA                                                         >  SRR4302542.5643581/1‑94 (MQ=60)
                                      TCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTAT                                                        <  SRR4302542.5987446/94‑1 (MQ=60)
                                       CTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATC                                                       >  SRR4302542.1405150/1‑94 (MQ=60)
                                       CTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATC                                                       <  SRR4302542.174278/94‑1 (MQ=60)
                                       CTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATC                                                       <  SRR4302542.5038590/94‑1 (MQ=60)
                                       CTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATC                                                       <  SRR4302542.6967247/94‑1 (MQ=60)
                                        TCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCA                                                      <  SRR4302542.5617557/94‑1 (MQ=60)
                                        TCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCA                                                      <  SRR4302542.2593816/94‑1 (MQ=60)
                                          TATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGT                                                    >  SRR4302542.7240050/1‑94 (MQ=60)
                                          TATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGT                                                    >  SRR4302542.1677252/1‑94 (MQ=60)
                                           ATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTC                                                   >  SRR4302542.2161345/1‑94 (MQ=60)
                                           ATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTC                                                   >  SRR4302542.6189235/1‑94 (MQ=60)
                                           ATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTC                                                   >  SRR4302542.3947905/1‑94 (MQ=60)
                                            TCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCT                                                  <  SRR4302542.4226365/94‑1 (MQ=60)
                                            TCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCT                                                  <  SRR4302542.1288428/94‑1 (MQ=60)
                                            TCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCT                                                  >  SRR4302542.1246388/1‑94 (MQ=60)
                                            TCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCT                                                  <  SRR4302542.6961494/94‑1 (MQ=60)
                                            TCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCT                                                  <  SRR4302542.2892132/94‑1 (MQ=60)
                                             CGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTG                                                 <  SRR4302542.6113239/94‑1 (MQ=60)
                                             CGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTG                                                 >  SRR4302542.6968062/1‑94 (MQ=60)
                                              GGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGG                                                >  SRR4302542.5724144/1‑94 (MQ=60)
                                              GGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGG                                                >  SRR4302542.6581067/1‑94 (MQ=60)
                                              GGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGG                                                >  SRR4302542.2787772/1‑94 (MQ=60)
                                               GTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGC                                               <  SRR4302542.2783429/94‑1 (MQ=60)
                                               GTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGC                                               >  SRR4302542.2269810/1‑94 (MQ=60)
                                                TATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCG                                              >  SRR4302542.1121852/1‑94 (MQ=60)
                                                 ATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGA                                             >  SRR4302542.5104299/1‑94 (MQ=60)
                                                 ATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGA                                             >  SRR4302542.2839925/1‑94 (MQ=60)
                                                 ATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGA                                             >  SRR4302542.3189600/1‑94 (MQ=60)
                                                   CTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAAT                                           <  SRR4302542.5141043/94‑1 (MQ=60)
                                                   CTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAAT                                           >  SRR4302542.862695/1‑94 (MQ=60)
                                                     CATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCA                                         >  SRR4302542.7181219/1‑94 (MQ=60)
                                                     CATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCA                                         <  SRR4302542.5437861/94‑1 (MQ=60)
                                                      ATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAA                                        >  SRR4302542.5236735/1‑94 (MQ=60)
                                                       TCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAA                                       >  SRR4302542.4480961/1‑94 (MQ=60)
                                                        CATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAAC                                      <  SRR4302542.5979284/94‑1 (MQ=60)
                                                        CATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAAC                                      >  SRR4302542.7224066/1‑94 (MQ=60)
                                                        CATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAAC                                      >  SRR4302542.3802700/1‑94 (MQ=60)
                                                         ATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACA                                     <  SRR4302542.1232727/94‑1 (MQ=60)
                                                         ATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACA                                     <  SRR4302542.924592/94‑1 (MQ=60)
                                                         ATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACA                                     <  SRR4302542.439311/94‑1 (MQ=60)
                                                         ATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACA                                     >  SRR4302542.7247457/1‑94 (MQ=60)
                                                           TATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAAT                                   >  SRR4302542.1269793/1‑94 (MQ=60)
                                                           TATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAAT                                   >  SRR4302542.6002710/1‑94 (MQ=60)
                                                            ATGGGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATT                                  <  SRR4302542.6237580/94‑1 (MQ=60)
                                                               GGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCA                               <  SRR4302542.3054005/94‑1 (MQ=60)
                                                               GGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCA                               >  SRR4302542.1951154/1‑94 (MQ=60)
                                                               GGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCA                               >  SRR4302542.3830700/1‑94 (MQ=60)
                                                               GGATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCA                               <  SRR4302542.4760967/94‑1 (MQ=60)
                                                                 ATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATC                             <  SRR4302542.2225954/94‑1 (MQ=60)
                                                                 ATGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATC                             <  SRR4302542.5911357/94‑1 (MQ=60)
                                                                 ATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATC                             >  SRR4302542.3826296/1‑94 (MQ=60)
                                                                  TGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCC                            <  SRR4302542.5930722/94‑1 (MQ=60)
                                                                  TGAGCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCC                            >  SRR4302542.2471480/1‑94 (MQ=60)
                                                                  TGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCC                            <  SRR4302542.197646/94‑1 (MQ=60)
                                                                    AGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCA                          >  SRR4302542.5854566/1‑94 (MQ=60)
                                                                     GCTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAG                         <  SRR4302542.3971601/94‑1 (MQ=60)
                                                                      CTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGG                        <  SRR4302542.895670/94‑1 (MQ=60)
                                                                      CTGCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGG                        <  SRR4302542.6139011/94‑1 (MQ=60)
                                                                        GCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCT                      <  SRR4302542.5333894/94‑1 (MQ=60)
                                                                        GCGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCT                      <  SRR4302542.1631540/94‑1 (MQ=60)
                                                                         CGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTG                     >  SRR4302542.6150849/1‑94 (MQ=60)
                                                                         CGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTG                     >  SRR4302542.6667684/1‑94 (MQ=60)
                                                                         CGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTG                     >  SRR4302542.5735398/1‑94 (MQ=60)
                                                                         CGACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTG                     >  SRR4302542.502635/1‑94 (MQ=60)
                                                                          GACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGA                    >  SRR4302542.5432341/1‑94 (MQ=60)
                                                                          GACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGA                    >  SRR4302542.1275768/1‑94 (MQ=60)
                                                                          GACATATGCCAGCAGGCGGTGTCTAGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGA                    >  SRR4302542.5716135/1‑94 (MQ=60)
                                                                          GACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGA                    >  SRR4302542.1784684/1‑94 (MQ=60)
                                                                           ACATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAA                   <  SRR4302542.3718949/94‑1 (MQ=60)
                                                                            CATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAA                  >  SRR4302542.3361882/1‑94 (MQ=60)
                                                                            CATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAA                  >  SRR4302542.6747428/1‑94 (MQ=60)
                                                                             ATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAAC                 >  SRR4302542.3295837/1‑94 (MQ=60)
                                                                             ATATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAAC                 >  SRR4302542.6673583/1‑94 (MQ=60)
                                                                             ATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAAC                 >  SRR4302542.2568334/1‑94 (MQ=60)
                                                                              TATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACC                >  SRR4302542.7519829/1‑94 (MQ=60)
                                                                              TATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACC                >  SRR4302542.3892245/1‑94 (MQ=60)
                                                                               ATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCG               <  SRR4302542.3452005/94‑1 (MQ=60)
                                                                               ATGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCG               <  SRR4302542.5725949/94‑1 (MQ=60)
                                                                                TGCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGC              <  SRR4302542.1224454/94‑1 (MQ=60)
                                                                                 GCCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCA             <  SRR4302542.4628616/94‑1 (MQ=60)
                                                                                  CCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCAC            <  SRR4302542.510587/94‑1 (MQ=60)
                                                                                  CCAGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCAC            <  SRR4302542.1869836/94‑1 (MQ=60)
                                                                                    AGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACAC          <  SRR4302542.558609/94‑1 (MQ=60)
                                                                                    AGCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACAC          >  SRR4302542.1488051/1‑94 (MQ=60)
                                                                                     GCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACG         <  SRR4302542.3400415/94‑1 (MQ=60)
                                                                                     GCAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACG         <  SRR4302542.3190470/94‑1 (MQ=60)
                                                                                      CAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGT        <  SRR4302542.6162037/94‑1 (MQ=60)
                                                                                      CAGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGT        >  SRR4302542.924963/1‑94 (MQ=60)
                                                                                       AGGCGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTC       <  SRR4302542.2999843/94‑1 (MQ=60)
                                                                                          CGGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCG    <  SRR4302542.3349284/94‑1 (MQ=60)
                                                                                          CGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCG    <  SRR4302542.4978286/94‑1 (MQ=60)
                                                                                           GGTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCGG   <  SRR4302542.7139401/94‑1 (MQ=60)
                                                                                            GTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCGGT  >  SRR4302542.3468498/1‑94 (MQ=60)
                                                                                            GTGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCGGT  <  SRR4302542.3443814/94‑1 (MQ=60)
                                                                                             |                                                                                            
ACAAAATGGTGACATGAGGGACATTGTGGACCCTGTATTCTCTATCGGTATCTCATCATTATGGGATGAGCTGCGACATATGCCAGCAGGCGGCGTCTGGTGGTTTAACGTCGATCGCCATGAAGATGCTATCAGTCTGGCGAATCAAACAATTGCATCCCAGGCTGAAACCGCACACGTCGCGGT  >  NC_000913/3694074‑3694259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑