Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,764,283 |
T→C |
V107A (GTT→GCT) |
yibA → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,764,283 | 0 | T | C | 84.1%
| 726.8
/ 140.3
| 339 | V107A (GTT→GCT) | yibA | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (26/28); new base C (138/147); total (164/175) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.38e-01 |
Only 100 of 341 total aligned reads displayed.
TACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTT > NC_000913/3764193‑3764375
|
taCTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTc > 2:3108954/1‑93 (MQ=255)
taCTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTc > 1:3186409/1‑93 (MQ=255)
aCTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCg < 2:7331567/93‑1 (MQ=255)
cTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGa > 1:3821143/1‑93 (MQ=255)
tCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAg > 2:554182/1‑93 (MQ=37)
cGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGc < 1:6492050/93‑1 (MQ=255)
gggCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCt < 2:6485714/93‑1 (MQ=255)
gggCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCt < 1:436640/93‑1 (MQ=255)
gggCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCt > 2:5999654/1‑93 (MQ=255)
ggCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTa < 2:1606830/93‑1 (MQ=255)
ggCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTa < 2:5392462/93‑1 (MQ=255)
cAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACg < 2:4339453/93‑1 (MQ=255)
cAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACg > 2:4668274/1‑93 (MQ=37)
aaaTAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACgg < 1:2694558/93‑1 (MQ=255)
aaTAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGc > 1:340964/1‑93 (MQ=37)
aaTAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGc > 2:366498/1‑93 (MQ=37)
aTAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCa > 2:1996821/1‑93 (MQ=37)
aaaaaTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAAt < 1:2212191/93‑1 (MQ=255)
aaaaaTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAAt < 2:4091234/93‑1 (MQ=255)
aaTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGa < 1:7338433/93‑1 (MQ=21)
aaTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGa > 2:5137108/1‑93 (MQ=18)
aTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAg < 2:2203147/93‑1 (MQ=21)
aTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAg < 1:4084040/93‑1 (MQ=21)
aTTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAg < 2:5895985/93‑1 (MQ=18)
tttGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGt > 2:5748578/1‑93 (MQ=18)
tGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCa > 1:7263067/1‑93 (MQ=33)
tGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCa < 1:3550802/93‑1 (MQ=34)
gCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCaa < 1:7414774/93‑1 (MQ=21)
gCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCaa < 2:4495199/93‑1 (MQ=18)
cAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAAc < 1:3744070/93‑1 (MQ=34)
aaaaaaTGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACg > 2:3751343/1‑93 (MQ=18)
aaaaaaTGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACg > 2:6587397/1‑93 (MQ=18)
aaaaTGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGc > 2:5843621/1‑93 (MQ=21)
aaaTGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCt > 2:119269/1‑93 (MQ=25)
aaTGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTc > 1:6185477/1‑93 (MQ=25)
aTGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCa < 2:5223739/93‑1 (MQ=255)
gCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGc < 2:2562985/93‑1 (MQ=255)
gCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGc < 1:4885753/93‑1 (MQ=255)
gAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGa > 2:6865739/1‑93 (MQ=255)
aaGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGAt > 2:3341720/1‑93 (MQ=255)
aaGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGAt > 2:883348/1‑93 (MQ=255)
gATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGc > 2:5832378/1‑93 (MQ=255)
tAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCaa < 2:6230956/93‑1 (MQ=255)
aaTGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAg > 2:4158734/1‑93 (MQ=255)
tGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaa > 1:5489980/1‑93 (MQ=255)
tGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaa < 2:4933827/93‑1 (MQ=255)
tGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaa > 1:2722889/1‑93 (MQ=255)
tGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaa < 2:2425326/93‑1 (MQ=255)
tttttAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaaaa < 2:751431/93‑1 (MQ=255)
ttttAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaaaaa < 1:637291/93‑1 (MQ=255)
ttttAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGaaaaa > 1:6035834/1‑93 (MQ=255)
tttAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAAc < 1:6937214/93‑1 (MQ=255)
tttAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAAc > 2:1082605/1‑93 (MQ=255)
tAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAAccc > 1:6285933/1‑93 (MQ=255)
atatTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCaa < 1:4012068/93‑1 (MQ=255)
tatTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAAt > 2:7086381/1‑93 (MQ=255)
atTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAAtt > 2:4764854/1‑93 (MQ=255)
atTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAAtt < 1:3699180/93‑1 (MQ=255)
ttttGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAAttt > 2:6164380/1‑93 (MQ=255)
tttGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTa < 1:1760573/93‑1 (MQ=255)
ttGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTAt < 1:4468635/93‑1 (MQ=255)
tGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTAtt > 1:4933999/1‑93 (MQ=255)
tGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTAtt < 2:6314156/93‑1 (MQ=255)
gAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTGAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTc > 1:2907252/1‑93 (MQ=255)
gAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTc < 1:2089532/93‑1 (MQ=255)
aaCAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCa < 1:3944934/93‑1 (MQ=255)
aaCAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCa > 2:2803773/1‑93 (MQ=255)
aaCAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCa < 1:5891335/93‑1 (MQ=255)
cAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCAcc < 2:2076751/93‑1 (MQ=255)
cAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCAcc < 2:1837178/93‑1 (MQ=255)
cAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCAcc < 2:1362620/93‑1 (MQ=255)
cAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCAcc < 2:4550220/93‑1 (MQ=255)
aaTATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCt > 2:2881818/1‑93 (MQ=255)
atGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTaaa < 2:683067/93‑1 (MQ=255)
atGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTaaa < 2:4878565/93‑1 (MQ=255)
tGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTGCGGCAATCGAGTCAACAGCTCAGCGATGCAAGTAAAACCCAATTTATTCACCTaaaa > 2:4433111/1‑93 (MQ=255)
tGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTaaaa < 1:2477750/93‑1 (MQ=255)
gCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAAta < 1:1156966/93‑1 (MQ=255)
gCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAAta > 1:1303019/1‑93 (MQ=255)
ttGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAAtagta < 1:911310/93‑1 (MQ=255)
ttGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAAtagta < 1:1920775/93‑1 (MQ=255)
tGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAAtagtag > 1:1047933/1‑93 (MQ=255)
aaTGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGaa < 1:7142315/93‑1 (MQ=255)
aTGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAAc < 1:525512/93‑1 (MQ=255)
tGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACa > 1:4127293/1‑93 (MQ=255)
tGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACa > 1:4608466/1‑93 (MQ=255)
gATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACaa > 2:7170862/1‑93 (MQ=255)
aTAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAAt < 1:3322254/93‑1 (MQ=255)
tAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAAtc > 2:2728933/1‑93 (MQ=255)
tAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAAtc > 2:3445938/1‑93 (MQ=255)
agagCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAAtctc > 1:6055903/1‑93 (MQ=255)
gagCGCTTGCCCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTCTTCACCTAAAATAGTAGAACAATCTCa < 2:6425837/93‑1 (MQ=255)
agCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCaa < 2:3540366/93‑1 (MQ=255)
gcgcTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCaaa < 2:3182206/93‑1 (MQ=255)
cgcTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAt < 1:5605737/93‑1 (MQ=255)
gcTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAtt > 1:6859359/1‑93 (MQ=255)
gcTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAtt > 2:2700945/1‑93 (MQ=255)
gcTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAtt > 2:4107352/1‑93 (MQ=255)
cTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTa < 2:6689186/93‑1 (MQ=255)
cTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAGTTa > 2:1544966/1‑93 (MQ=255)
|
TACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTT > NC_000913/3764193‑3764375
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTTT > NC_000913/3764192‑3764376
|
ATACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTC > SRR4302542.3216594/1‑94 (MQ=26)
ATACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTC < SRR4302542.3896303/94‑1 (MQ=26)
ATACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTC > SRR4302542.4132495/1‑94 (MQ=26)
ATACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTC > SRR4302542.1564425/1‑94 (MQ=26)
TACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCG < SRR4302542.5957201/94‑1 (MQ=25)
TACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCG < SRR4302542.4218941/94‑1 (MQ=25)
ACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGA < SRR4302542.5316995/94‑1 (MQ=26)
ACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGA > SRR4302542.3858946/1‑94 (MQ=25)
CTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAG > SRR4302542.4944635/1‑94 (MQ=25)
CTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAG > SRR4302542.2519342/1‑94 (MQ=25)
TCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGC < SRR4302542.5026937/94‑1 (MQ=25)
CGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCT < SRR4302542.6556018/94‑1 (MQ=25)
GGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTA < SRR4302542.440423/94‑1 (MQ=25)
GGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTA > SRR4302542.415442/1‑94 (MQ=25)
CAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGG > SRR4302542.3670230/1‑94 (MQ=26)
CAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGG > SRR4302542.5073641/1‑94 (MQ=25)
AAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGC < SRR4302542.7415552/94‑1 (MQ=26)
AAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGC < SRR4302542.464176/94‑1 (MQ=25)
AAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGC > SRR4302542.343924/1‑94 (MQ=25)
AAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGC > SRR4302542.964770/1‑94 (MQ=25)
AAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGC < SRR4302542.2720542/94‑1 (MQ=25)
AATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCA > SRR4302542.2939716/1‑94 (MQ=25)
TAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAAT > SRR4302542.6942350/1‑94 (MQ=20)
TAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAAT < SRR4302542.2486572/94‑1 (MQ=20)
TAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAAT < SRR4302542.4466640/94‑1 (MQ=20)
AAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATC < SRR4302542.2231226/94‑1 (MQ=15)
AAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGA < SRR4302542.38449/94‑1 (MQ=10)
AATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAG > SRR4302542.4116196/1‑94 (MQ=10)
AATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAG < SRR4302542.6090559/94‑1 (MQ=10)
AATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAG < SRR4302542.7410316/94‑1 (MQ=10)
AATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAG < SRR4302542.7399071/94‑1 (MQ=10)
ATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGT < SRR4302542.4124285/94‑1 (MQ=10)
TTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTC < SRR4302542.1185047/94‑1 (MQ=10)
TTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCA > SRR4302542.7334268/1‑94 (MQ=10)
TTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCA > SRR4302542.3480783/1‑94 (MQ=10)
TTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCA > SRR4302542.2846219/1‑94 (MQ=10)
TGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAA < SRR4302542.3583995/94‑1 (MQ=10)
GCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAAC < SRR4302542.7487333/94‑1 (MQ=10)
GCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAAC < SRR4302542.4214276/94‑1 (MQ=10)
CAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACG < SRR4302542.3781120/94‑1 (MQ=10)
AAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGG > SRR4302542.6903964/1‑94 (MQ=10)
AAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGG < SRR4302542.6349937/94‑1 (MQ=10)
AAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTC > SRR4302542.6245524/1‑94 (MQ=15)
AAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTC > SRR4302542.6681725/1‑94 (MQ=15)
ATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAG > SRR4302542.2470075/1‑94 (MQ=24)
ATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAG < SRR4302542.3765635/94‑1 (MQ=24)
ATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAG < SRR4302542.6550251/94‑1 (MQ=23)
TGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGC > SRR4302542.4073771/1‑94 (MQ=26)
GCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCG < SRR4302542.4933289/94‑1 (MQ=28)
CGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGA > SRR4302542.3466320/1‑94 (MQ=31)
CGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGA < SRR4302542.2743549/94‑1 (MQ=31)
CGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGA > SRR4302542.7355009/1‑94 (MQ=30)
CGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGA > SRR4302542.3661835/1‑94 (MQ=30)
GAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGAT < SRR4302542.4789613/94‑1 (MQ=33)
GAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGAT < SRR4302542.7234891/94‑1 (MQ=33)
GAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGAT < SRR4302542.6654531/94‑1 (MQ=33)
AAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATG < SRR4302542.2165607/94‑1 (MQ=35)
AAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATG > SRR4302542.3396378/1‑94 (MQ=35)
AGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGC > SRR4302542.6378688/1‑94 (MQ=38)
GATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCA > SRR4302542.6957141/1‑94 (MQ=40)
ATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAA > SRR4302542.3325848/1‑94 (MQ=43)
ATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAA > SRR4302542.5892421/1‑94 (MQ=43)
TAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAG < SRR4302542.210803/94‑1 (MQ=47)
TAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAG < SRR4302542.4415591/94‑1 (MQ=45)
TAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAG < SRR4302542.404080/94‑1 (MQ=45)
TAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAG > SRR4302542.797689/1‑94 (MQ=45)
TAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAG > SRR4302542.5828637/1‑94 (MQ=45)
ATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAA > SRR4302542.5543314/1‑94 (MQ=52)
ATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAA > SRR4302542.2749162/1‑94 (MQ=50)
ATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAA > SRR4302542.1838652/1‑94 (MQ=50)
GTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAA < SRR4302542.4537660/94‑1 (MQ=55)
TTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA > SRR4302542.6094266/1‑94 (MQ=58)
TTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑C < SRR4302542.642776/94‑1 (MQ=60)
TTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑C < SRR4302542.367254/94‑1 (MQ=60)
TTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑C > SRR4302542.5391046/1‑94 (MQ=60)
TTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CC > SRR4302542.4083029/1‑94 (MQ=60)
TTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CC < SRR4302542.7005368/94‑1 (MQ=60)
TTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCC > SRR4302542.5647540/1‑94 (MQ=60)
TTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCC > SRR4302542.6347875/1‑94 (MQ=60)
TAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCA > SRR4302542.7297630/1‑94 (MQ=60)
TAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCA > SRR4302542.2687184/1‑94 (MQ=60)
ATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAAT < SRR4302542.4051660/94‑1 (MQ=60)
TATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATT > SRR4302542.2701700/1‑94 (MQ=60)
ATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTT < SRR4302542.2824056/94‑1 (MQ=60)
ATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTT < SRR4302542.3735785/94‑1 (MQ=60)
ATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTT > SRR4302542.6411340/1‑94 (MQ=60)
TTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTAT > SRR4302542.648181/1‑94 (MQ=60)
TTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTAT < SRR4302542.1775844/94‑1 (MQ=60)
TTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATT > SRR4302542.4981959/1‑94 (MQ=60)
TTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATT > SRR4302542.6109025/1‑94 (MQ=60)
TTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATT < SRR4302542.4512468/94‑1 (MQ=60)
TGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTGAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTC > SRR4302542.2935137/1‑94 (MQ=60)
TGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTC < SRR4302542.4899973/94‑1 (MQ=60)
TGAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTC > SRR4302542.3947678/1‑94 (MQ=60)
GAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCA > SRR4302542.4343292/1‑94 (MQ=60)
GAACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCA < SRR4302542.2107566/94‑1 (MQ=60)
AACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGGTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCAC > SRR4302542.6282876/1‑94 (MQ=60)
AACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCAC < SRR4302542.2090810/94‑1 (MQ=60)
AACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCAC < SRR4302542.338394/94‑1 (MQ=60)
AACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCAC < SRR4302542.3983895/94‑1 (MQ=60)
AACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCAC < SRR4302542.5948425/94‑1 (MQ=60)
ACAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACC > SRR4302542.6168122/1‑94 (MQ=60)
CAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCT > SRR4302542.3780621/1‑94 (MQ=60)
CAATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCT > SRR4302542.2943363/1‑94 (MQ=60)
AATATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTA < SRR4302542.5154782/94‑1 (MQ=60)
ATGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAA < SRR4302542.3917739/94‑1 (MQ=60)
TGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAAT < SRR4302542.272679/94‑1 (MQ=60)
TGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAAT < SRR4302542.3218239/94‑1 (MQ=60)
TGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAAT < SRR4302542.2501783/94‑1 (MQ=60)
TGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAAT > SRR4302542.3817057/1‑94 (MQ=60)
TGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAAT > SRR4302542.858243/1‑94 (MQ=60)
TGGCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAAT < SRR4302542.3880934/94‑1 (MQ=60)
GGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATA > SRR4302542.1314239/1‑94 (MQ=60)
GCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAG < SRR4302542.1166882/94‑1 (MQ=60)
GCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAACCCCAATTTATTCACCTAAAATA < SRR4302542.1131595/94‑1 (MQ=60)
GCATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAG < SRR4302542.7120055/94‑1 (MQ=60)
CATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGT > SRR4302542.1217354/1‑94 (MQ=60)
CATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGT < SRR4302542.6199761/94‑1 (MQ=60)
ATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTA > SRR4302542.6096131/1‑94 (MQ=60)
ATTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTA < SRR4302542.7286764/94‑1 (MQ=60)
TTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAG < SRR4302542.919167/94‑1 (MQ=60)
TTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAG < SRR4302542.1937365/94‑1 (MQ=60)
TTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAG > SRR4302542.1056921/1‑94 (MQ=60)
TTGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAG < SRR4302542.4030119/94‑1 (MQ=60)
TGAATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGA < SRR4302542.7108048/94‑1 (MQ=60)
AATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAAC < SRR4302542.2759753/94‑1 (MQ=60)
AATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAAC < SRR4302542.7212403/94‑1 (MQ=60)
ATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACA < SRR4302542.530051/94‑1 (MQ=60)
ATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACA > SRR4302542.4167948/1‑94 (MQ=60)
ATGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACA > SRR4302542.4653501/1‑94 (MQ=60)
TGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAA > SRR4302542.1491067/1‑94 (MQ=60)
TGATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAA > SRR4302542.114260/1‑94 (MQ=60)
GATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGAAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAAT < SRR4302542.6281539/94‑1 (MQ=60)
ATAAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATC < SRR4302542.3353542/94‑1 (MQ=60)
AAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTC > SRR4302542.1870562/1‑94 (MQ=60)
AAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTC > SRR4302542.6114523/1‑94 (MQ=60)
AAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTC > SRR4302542.4966273/1‑94 (MQ=60)
AAGAGCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTC > SRR4302542.7439946/1‑94 (MQ=60)
GCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAT < SRR4302542.5595887/94‑1 (MQ=60)
GCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAT < SRR4302542.2069648/94‑1 (MQ=60)
GCGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAAT < SRR4302542.7458721/94‑1 (MQ=60)
CGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATT > SRR4302542.6926759/1‑94 (MQ=60)
CGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATT < SRR4302542.1968968/94‑1 (MQ=60)
CGCTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATT < SRR4302542.5660195/94‑1 (MQ=60)
CTTGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTAC < SRR4302542.4805057/94‑1 (MQ=60)
TGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTG < SRR4302542.3435683/94‑1 (MQ=60)
TGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTG < SRR4302542.5871473/94‑1 (MQ=60)
TGCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTG < SRR4302542.6096952/94‑1 (MQ=60)
GCGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGC < SRR4302542.1677936/94‑1 (MQ=60)
CGCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCT > SRR4302542.6986724/1‑94 (MQ=60)
GCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTT < SRR4302542.1736554/94‑1 (MQ=60)
GCTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTT > SRR4302542.6505827/1‑94 (MQ=60)
CTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTTT < SRR4302542.620576/94‑1 (MQ=60)
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ATACTCGGGCAAATAAAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTTGAACAATATGGCATTGAATGATAAGAGCGCTTGCGTTCGAGCTACGGCAATCGAGTCAACGGCTCAGCGATGCAAGAAAAA‑CCCAATTTATTCACCTAAAATAGTAGAACAATCTCAAATTACTGCTTT > NC_000913/3764192‑3764376
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
