Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,840,766 |
G→A |
C243C (TGC→TGT) |
yicO ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,840,766 | 0 | G | A | 81.9%
| 746.0
/ 116.7
| 293 | C243C (TGC→TGT) | yicO | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (23/30); new base A (122/118); total (145/148) |
| Fisher's exact test for biased strand distribution p-value = 3.64e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.88e-01 |
Only 100 of 297 total aligned reads displayed.
CGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAAC > NC_000913/3840675‑3840856
|
gcTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCacaaca < 2:5043946/93‑1 (MQ=255)
gcTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCa > 1:6159394/1‑93 (MQ=255)
gcTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCa > 1:1549089/1‑93 (MQ=255)
tCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAg > 2:4916961/1‑93 (MQ=255)
cAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGa > 2:359796/1‑93 (MQ=255)
aaaTCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGAc < 1:5063945/93‑1 (MQ=255)
aaaTCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGAc > 2:2671977/1‑93 (MQ=255)
aTCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGt < 2:3541067/93‑1 (MQ=255)
aTCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGt > 1:6641170/1‑93 (MQ=255)
aTCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGt < 1:3514906/93‑1 (MQ=255)
tCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTc > 1:7254853/1‑93 (MQ=255)
tCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTc > 2:3820863/1‑93 (MQ=255)
cTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTca < 2:2523231/93‑1 (MQ=255)
tACTTGACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTcac > 1:3223875/1‑93 (MQ=255)
tACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTcac < 2:3184951/93‑1 (MQ=255)
aCTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTcacc > 2:3044247/1‑93 (MQ=255)
cTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTcacca > 2:1934805/1‑93 (MQ=255)
ttCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTcaccac > 2:2277265/1‑93 (MQ=255)
ttCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTcaccac > 2:3267324/1‑93 (MQ=255)
ccAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATa < 2:854937/93‑1 (MQ=255)
cAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAg > 1:690805/1‑93 (MQ=255)
aaTGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGa < 2:5802544/93‑1 (MQ=255)
tGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGaaa > 2:6799522/1‑93 (MQ=255)
tGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGaaa < 1:2875902/93‑1 (MQ=255)
cgcTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCa < 2:1821166/93‑1 (MQ=255)
gcTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCAc < 1:4911924/93‑1 (MQ=255)
gcTAATATCAGGCGCAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATATTCCACAACAAGACGTCACCACAATAGAAACCAGCAc < 2:4461381/93‑1 (MQ=255)
cTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCAcc > 1:1840802/1‑93 (MQ=255)
tAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACcg > 1:2812298/1‑93 (MQ=255)
aaTATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACcgc < 1:2298464/93‑1 (MQ=255)
tatCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCgg > 1:2041133/1‑93 (MQ=255)
tatCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCgg > 2:5626828/1‑93 (MQ=255)
tCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCa > 1:2374308/1‑93 (MQ=255)
cAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCAt < 2:4309990/93‑1 (MQ=255)
aGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATg > 1:145051/1‑93 (MQ=255)
ggCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGa > 1:5652818/1‑93 (MQ=255)
gCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGaa < 1:6266985/93‑1 (MQ=255)
gaatggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAAt > 2:1723924/1‑93 (MQ=255)
gaatggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAAt > 1:1202595/1‑93 (MQ=255)
gaatggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAAt > 1:3984936/1‑93 (MQ=255)
aatggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATg < 1:4374953/93‑1 (MQ=255)
atggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGa > 1:5561173/1‑93 (MQ=255)
atggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGa > 1:6837902/1‑93 (MQ=255)
atggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGa < 2:5533162/93‑1 (MQ=255)
atggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGa > 2:7155495/1‑93 (MQ=255)
ggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACg < 1:472385/93‑1 (MQ=255)
ggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACg > 1:3033233/1‑93 (MQ=255)
ggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACg < 2:7229885/93‑1 (MQ=255)
gaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGt < 2:1370723/93‑1 (MQ=255)
gaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGt < 1:4203101/93‑1 (MQ=255)
gaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGt > 2:309647/1‑93 (MQ=255)
atAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGtga < 2:6358263/93‑1 (MQ=255)
atAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGtga < 2:6075167/93‑1 (MQ=255)
tAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGtgat < 2:6926286/93‑1 (MQ=255)
gACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGtgatga < 2:6527683/93‑1 (MQ=255)
cgccgcTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGaca < 2:1089715/93‑1 (MQ=255)
gccgcTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGacaa > 1:4560897/1‑93 (MQ=255)
gccgcTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGacaa > 1:3737379/1‑93 (MQ=255)
ccgcTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGacaac > 2:5492451/1‑93 (MQ=255)
cgcTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGacaaca > 1:3928418/1‑93 (MQ=255)
gcTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAacac > 1:3349892/1‑93 (MQ=255)
gcTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAacac < 2:5773269/93‑1 (MQ=255)
gcTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAacac > 2:2172204/1‑93 (MQ=255)
cTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACg > 2:2871111/1‑93 (MQ=255)
cTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACg > 2:1678002/1‑93 (MQ=255)
tAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACgg > 2:1880304/1‑93 (MQ=255)
tAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACgg < 2:4086721/93‑1 (MQ=255)
aaaaTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGt < 1:1108601/93‑1 (MQ=255)
aaaaTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGt > 2:6219475/1‑93 (MQ=255)
aaaaTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGt > 1:7016816/1‑93 (MQ=255)
aaaTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGtt > 2:1275505/1‑93 (MQ=255)
aaTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTta < 2:5932157/93‑1 (MQ=255)
aaTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTta < 1:40792/93‑1 (MQ=255)
aTGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTtat < 1:956052/93‑1 (MQ=255)
tGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTtata > 1:2147313/1‑93 (MQ=255)
aCATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTataata > 2:2106600/1‑93 (MQ=255)
cATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTAtaataa > 2:4235354/1‑93 (MQ=255)
aTCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaa < 2:7357928/93‑1 (MQ=255)
aTCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaa < 1:151379/93‑1 (MQ=255)
aTCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaa > 2:6090989/1‑93 (MQ=255)
tCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaaa > 1:6330660/1‑93 (MQ=255)
tCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaaa < 2:2973873/93‑1 (MQ=255)
cACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaaaa > 2:3418528/1‑93 (MQ=255)
cACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaaaa > 2:6046238/1‑93 (MQ=255)
cACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATaaaaa < 1:5317793/93‑1 (MQ=255)
ccGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAAc > 1:2528047/1‑93 (MQ=255)
cGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAAcc < 1:6247154/93‑1 (MQ=255)
aaaaTAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTa > 2:4650472/1‑93 (MQ=255)
aaaTAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTaa < 2:1448048/93‑1 (MQ=255)
aataatCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTaaa < 2:3999717/93‑1 (MQ=255)
ataatCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTaaaa < 2:6310888/93‑1 (MQ=255)
ataatCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTaaaa < 2:472743/93‑1 (MQ=255)
ataatCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTaaaa > 2:7483842/1‑93 (MQ=255)
tCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATAcc < 1:19539/93‑1 (MQ=255)
tCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATAcc > 1:752723/1‑93 (MQ=255)
tCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATAcc < 1:7365713/93‑1 (MQ=255)
ccACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCt < 2:531450/93‑1 (MQ=255)
ccACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAAAAAAAAACCCTAAAATACCt < 2:15619/93‑1 (MQ=255)
acaacaAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTaa > 1:2793439/1‑93 (MQ=255)
caGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTaac < 2:866023/93‑1 (MQ=255)
|
CGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAAC > NC_000913/3840675‑3840856
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAAC > NC_000913/3840674‑3840859
|
CCGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAAC > SRR4302542.5487136/1‑94 (MQ=60)
CCGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAAC > SRR4302542.4861471/1‑94 (MQ=60)
CGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCA > SRR4302542.6219057/1‑94 (MQ=60)
CGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCA > SRR4302542.1562458/1‑94 (MQ=60)
CTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAG < SRR4302542.4418573/94‑1 (MQ=60)
TCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGA > SRR4302542.1132662/1‑94 (MQ=60)
CCAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAACAC > SRR4302542.4142004/1‑94 (MQ=60)
CAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGAC < SRR4302542.7056785/94‑1 (MQ=60)
CAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGAC < SRR4302542.5679210/94‑1 (MQ=60)
AAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACG < SRR4302542.5113155/94‑1 (MQ=60)
AATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGT > SRR4302542.6706630/1‑94 (MQ=60)
AATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGT < SRR4302542.4061163/94‑1 (MQ=60)
ATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTC < SRR4302542.3547767/94‑1 (MQ=60)
ATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTC > SRR4302542.7325980/1‑94 (MQ=60)
CTACTTGACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCAC > SRR4302542.3254383/1‑94 (MQ=60)
CTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCAC < SRR4302542.2069835/94‑1 (MQ=60)
CTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCAC > SRR4302542.2935585/1‑94 (MQ=60)
TACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACC > SRR4302542.396856/1‑94 (MQ=60)
ACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCA > SRR4302542.2221376/1‑94 (MQ=60)
CTTGACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAAAATCACCGCAAAATAATCCACAGCAAGACGTCACCAC > SRR4302542.6311592/1‑94 (MQ=60)
TTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACA > SRR4302542.2806967/1‑94 (MQ=60)
CACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAAT < SRR4302542.6988720/94‑1 (MQ=60)
CCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAG > SRR4302542.6409140/1‑94 (MQ=60)
CCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAG > SRR4302542.5474957/1‑94 (MQ=60)
CCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAG > SRR4302542.696773/1‑94 (MQ=60)
CAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGA > SRR4302542.584790/1‑94 (MQ=60)
AATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAA < SRR4302542.1939436/94‑1 (MQ=60)
TGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAAC < SRR4302542.2903514/94‑1 (MQ=60)
TGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAAC < SRR4302542.4848224/94‑1 (MQ=60)
GACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACC < SRR4302542.7456384/94‑1 (MQ=60)
ACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCA < SRR4302542.7320622/94‑1 (MQ=60)
CGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAG > SRR4302542.4373759/1‑94 (MQ=60)
CCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCA > SRR4302542.3162768/1‑94 (MQ=60)
GCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACC > SRR4302542.1856735/1‑94 (MQ=60)
GCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACC < SRR4302542.4959700/94‑1 (MQ=60)
GCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACC < SRR4302542.88637/94‑1 (MQ=60)
CTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCG > SRR4302542.4155321/1‑94 (MQ=60)
CTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCG > SRR4302542.2839360/1‑94 (MQ=60)
AATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCG < SRR4302542.6909678/94‑1 (MQ=60)
AATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCG < SRR4302542.2318210/94‑1 (MQ=60)
ATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGG < SRR4302542.734086/94‑1 (MQ=60)
ATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGG > SRR4302542.2058784/1‑94 (MQ=60)
ATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCA > SRR4302542.284211/1‑94 (MQ=60)
ATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCA > SRR4302542.2395407/1‑94 (MQ=60)
TCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCAT < SRR4302542.5618791/94‑1 (MQ=60)
CAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATG > SRR4302542.146261/1‑94 (MQ=60)
AGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGA > SRR4302542.5707699/1‑94 (MQ=60)
AGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGA > SRR4302542.2330442/1‑94 (MQ=60)
GCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAA < SRR4302542.5057890/94‑1 (MQ=60)
GCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAA < SRR4302542.6328748/94‑1 (MQ=60)
GCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAA < SRR4302542.220422/94‑1 (MQ=60)
CGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAA < SRR4302542.6670021/94‑1 (MQ=60)
GGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAAT > SRR4302542.1212943/1‑94 (MQ=60)
GGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAAT > SRR4302542.4024249/1‑94 (MQ=60)
GAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATG < SRR4302542.4621749/94‑1 (MQ=60)
GAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATG < SRR4302542.6968009/94‑1 (MQ=60)
GAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATG > SRR4302542.394667/1‑94 (MQ=60)
AATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGA > SRR4302542.5615207/1‑94 (MQ=60)
AATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGA < SRR4302542.4417896/94‑1 (MQ=60)
AATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGA > SRR4302542.6905089/1‑94 (MQ=60)
ATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGAC < SRR4302542.5540071/94‑1 (MQ=60)
TGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACG > SRR4302542.2826947/1‑94 (MQ=60)
TGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACG > SRR4302542.3685883/1‑94 (MQ=60)
TGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACG < SRR4302542.2410194/94‑1 (MQ=60)
TGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACG < SRR4302542.253998/94‑1 (MQ=60)
TGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACG > SRR4302542.3062171/1‑94 (MQ=60)
TGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACG < SRR4302542.6382241/94‑1 (MQ=60)
GGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGT < SRR4302542.476474/94‑1 (MQ=60)
GAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTG < SRR4302542.4244541/94‑1 (MQ=60)
AATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGA > SRR4302542.2851872/1‑94 (MQ=60)
ATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGAT < SRR4302542.2054801/94‑1 (MQ=60)
ATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGAT < SRR4302542.4084838/94‑1 (MQ=60)
TAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATG < SRR4302542.3359585/94‑1 (MQ=60)
TAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATG < SRR4302542.1541861/94‑1 (MQ=60)
TAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATG < SRR4302542.2829591/94‑1 (MQ=60)
AGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGA > SRR4302542.4780776/1‑94 (MQ=60)
GACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGAC > SRR4302542.3459332/1‑94 (MQ=60)
CGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAA > SRR4302542.4605558/1‑94 (MQ=60)
CGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAA > SRR4302542.3774375/1‑94 (MQ=60)
CGCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAA < SRR4302542.3645179/94‑1 (MQ=60)
GCCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAAC < SRR4302542.7264200/94‑1 (MQ=60)
CCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACA > SRR4302542.939512/1‑94 (MQ=60)
CCGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACA > SRR4302542.3967176/1‑94 (MQ=60)
CGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACAC > SRR4302542.3381411/1‑94 (MQ=60)
CGCTAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACAC > SRR4302542.6868059/1‑94 (MQ=60)
CTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGG < SRR4302542.1347436/94‑1 (MQ=60)
TAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGT > SRR4302542.1514854/1‑94 (MQ=60)
TAAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGT > SRR4302542.7085731/1‑94 (MQ=60)
AAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTT < SRR4302542.1682780/94‑1 (MQ=60)
AAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTT < SRR4302542.1118080/94‑1 (MQ=60)
AAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTT < SRR4302542.3198883/94‑1 (MQ=60)
AAAATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTT < SRR4302542.4756842/94‑1 (MQ=60)
AATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTAT < SRR4302542.41151/94‑1 (MQ=60)
ATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATA > SRR4302542.2165826/1‑94 (MQ=60)
ATGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATA < SRR4302542.964257/94‑1 (MQ=60)
TGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAA > SRR4302542.6266591/1‑94 (MQ=60)
TGAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAA < SRR4302542.3788266/94‑1 (MQ=60)
GAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAAT < SRR4302542.743501/94‑1 (MQ=60)
GAACATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAAT < SRR4302542.1547851/94‑1 (MQ=60)
ACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAA > SRR4302542.6300286/1‑94 (MQ=60)
ATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAA > SRR4302542.6393036/1‑94 (MQ=60)
ATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAA < SRR4302542.152664/94‑1 (MQ=60)
ATCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAA > SRR4302542.7407302/1‑94 (MQ=60)
TCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAA < SRR4302542.2326275/94‑1 (MQ=60)
TCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAA > SRR4302542.1503485/1‑94 (MQ=60)
TCACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAA < SRR4302542.5277108/94‑1 (MQ=60)
CACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAA < SRR4302542.5369449/94‑1 (MQ=60)
ACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAAC > SRR4302542.2552565/1‑94 (MQ=60)
ACCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAAC < SRR4302542.6832129/94‑1 (MQ=60)
CCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACC < SRR4302542.5087844/94‑1 (MQ=60)
CCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACC > SRR4302542.4523277/1‑94 (MQ=60)
CCGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACC < SRR4302542.3323989/94‑1 (MQ=60)
CGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCC > SRR4302542.1881899/1‑94 (MQ=60)
CGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCC < SRR4302542.6308712/94‑1 (MQ=60)
CGAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCC > SRR4302542.3995789/1‑94 (MQ=60)
GAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCT < SRR4302542.978359/94‑1 (MQ=60)
GAAAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCT < SRR4302542.206730/94‑1 (MQ=60)
AAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAA > SRR4302542.5313858/1‑94 (MQ=60)
AAAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAA > SRR4302542.3045746/1‑94 (MQ=60)
AAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAA > SRR4302542.1854019/1‑94 (MQ=60)
AAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAA > SRR4302542.6350033/1‑94 (MQ=60)
AAATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAA > SRR4302542.2554487/1‑94 (MQ=60)
ATAATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAAT < SRR4302542.436773/94‑1 (MQ=60)
ATCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACC > SRR4302542.759236/1‑94 (MQ=60)
TCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCT < SRR4302542.3437100/94‑1 (MQ=60)
TCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCT < SRR4302542.19704/94‑1 (MQ=60)
TCCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCT < SRR4302542.7437856/94‑1 (MQ=60)
CCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTA < SRR4302542.1264682/94‑1 (MQ=60)
CCACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTA > SRR4302542.2020360/1‑94 (MQ=60)
CACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAA > SRR4302542.2820321/1‑94 (MQ=60)
CACAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAA < SRR4302542.5858997/94‑1 (MQ=60)
CAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACA > SRR4302542.6545503/1‑94 (MQ=60)
CAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACA < SRR4302542.5332491/94‑1 (MQ=60)
CAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACA < SRR4302542.2427823/94‑1 (MQ=60)
CAACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACA < SRR4302542.6963162/94‑1 (MQ=60)
AACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAA < SRR4302542.6432985/94‑1 (MQ=60)
ACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAAC > SRR4302542.3328595/1‑94 (MQ=60)
ACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAAC < SRR4302542.3874610/94‑1 (MQ=60)
ACAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAAC < SRR4302542.4155677/94‑1 (MQ=60)
|
CCGCTCAAATCTACTTCACCAATGACGCCGCTAATATCAGGCGGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAAC > NC_000913/3840674‑3840859
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
