Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 91.2%
| 808.6
/ 77.4
| 321 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (9/19); new base C (33/259); total (42/279) |
| Fisher's exact test for biased strand distribution p-value = 5.12e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 91.0%
| 808.5
/ 80.9
| 321 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (10/19); new base C (32/260); total (42/279) |
| Fisher's exact test for biased strand distribution p-value = 1.58e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 330 total aligned reads displayed.
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957000‑3957173
||
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑c < 2:4644303/93‑1 (MQ=255)
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑c < 1:562221/93‑1 (MQ=255)
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑ccct < 2:2273340/93‑1 (MQ=255)
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑ccct < 1:2973484/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑Ccctc < 2:4864663/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑Ccctc < 2:3886969/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑Ccctc < 1:3202057/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCAGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑Ccctc < 2:7217282/93‑1 (MQ=255)
gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑GCCTCA‑‑CCCCC‑‑A‑‑Ccctctcc > 2:3634167/1‑90 (MQ=255)
gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCC‑‑CCCCG‑‑A‑‑Ccctctcc < 1:2817074/93‑4 (MQ=255)
taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑GCCTCA‑‑CCCCG‑‑A‑‑Ccctctccc > 1:1125637/1‑89 (MQ=255)
ggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCcac < 2:6564739/93‑1 (MQ=38)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagg < 2:1687157/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagg < 1:4452697/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACaggga < 2:3097597/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagggaga < 2:819394/93‑1 (MQ=37)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagggagagg < 1:1391038/93‑1 (MQ=25)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagggagagg < 1:4609895/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagggagaggg < 2:3066985/93‑1 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATCG‑‑CCCCCA‑‑CCCCG‑‑ACCCCCCCCCACagggtgaggg > 1:6688712/1‑93 (MQ=255)
cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACagggagagggag < 1:7408261/93‑1 (MQ=25)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCCCA‑‑CCCCC‑‑ACCCTCTCCCCCCgggaggggggg‑a > 1:2323734/1‑93 (MQ=25)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑aa < 2:7046330/93‑1 (MQ=25)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑aa < 2:3721309/93‑1 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑aaaa < 2:7160109/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAaca < 1:5462008/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAaca < 2:5663519/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCGCA‑‑CCCCGGCC‑‑CTCTCCCACAGGGAGAGGGGG‑gaaaaa > 2:4394582/1‑91 (MQ=18)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCC‑‑CCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAG‑AAAacac < 1:4994329/93‑1 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCACCCCCCC‑‑C‑‑CTCTCCCACCGGGAGGGGGGG‑GAAacac > 1:4956730/1‑93 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAacac < 1:3811649/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACt < 2:6459125/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCCCC‑‑CCCCC‑‑ACCCCCTCCCCCCGGGAGGGGGAG‑gaaaaaaa > 2:3456809/1‑89 (MQ=19)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTc < 1:3277699/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑a > 2:4986826/1‑93 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑aa < 1:4222819/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑aa < 1:2296873/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑g < 1:999425/93‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑ggc < 2:7447878/93‑3 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑ggcc < 2:4814619/93‑4 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCC‑‑CCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑ggcct < 1:6137445/93‑5 (MQ=18)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑ggcct < 2:5410152/93‑5 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTtc < 1:47468/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTtc < 1:3573679/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTtct < 2:407865/93‑1 (MQ=21)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTtct < 2:4309308/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTtct < 2:2343567/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTcc < 1:2106839/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTcc < 1:595887/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTcc < 1:3420256/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCt < 2:6237566/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTg < 2:1786916/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTg < 1:6632012/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTg < 1:7073373/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTg < 1:2648754/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTg < 2:2742789/93‑1 (MQ=18)
tATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑GC‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGga < 1:1208530/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGaa < 2:3256808/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:6123468/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAgg < 2:5822223/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAgg < 1:788244/93‑1 (MQ=18)
cTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGc < 2:2890828/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGAT‑GCCCCCCCC‑‑CCCCC‑‑C‑‑CCCTCCCCCAGGGGGGGGGGG‑AAAAAACTCAAA‑GCCCTCTCCCTGGGAAgggcc > 1:3721389/1‑90 (MQ=9)
gCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:6452089/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:525219/93‑1 (MQ=18)
gggTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑AC‑CCCTCCCCCACGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt > 2:473366/1‑93 (MQ=21)
ggTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:5961346/93‑1 (MQ=18)
ttAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:2143146/93‑1 (MQ=18)
tAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:1856043/93‑1 (MQ=18)
tAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:5297196/93‑1 (MQ=18)
tAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:1985038/93‑1 (MQ=18)
tAAGTGCGCGCTGAA‑G‑‑CCCCCC‑‑CCCCGGCC‑‑CTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:5504985/93‑1 (MQ=18)
aaGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:19776/93‑1 (MQ=18)
aaGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:7473852/93‑1 (MQ=18)
aGTGCGCGCTGAT‑G‑‑CCCCCA‑‑CCCCC‑‑ACCCCCTCCCCCCGGGGGGGGGAGAAAAAAACCA‑AA‑GGCTTCTCCTCGAGAAGGGCTTGCTATTAGtt > 1:1032302/1‑93 (MQ=9)
nngcgcgcTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 2:1351512/91‑1 (MQ=18)
gTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 2:2171043/93‑1 (MQ=18)
gTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 2:6876363/93‑1 (MQ=18)
tGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:7322482/93‑1 (MQ=21)
gcgcgcTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:7341242/93‑1 (MQ=21)
gcgcTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 1:1480774/93‑1 (MQ=21)
gcTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:2843395/93‑1 (MQ=21)
cTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:301339/93‑1 (MQ=21)
gAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:1128213/93‑1 (MQ=25)
gAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:4260743/93‑1 (MQ=25)
gAT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:2560913/93‑1 (MQ=25)
aT‑G‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa < 1:1168425/93‑1 (MQ=25)
g‑‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:6318590/93‑1 (MQ=25)
cccTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:1558610/93‑1 (MQ=25)
cccTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:6784023/93‑1 (MQ=25)
cccTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:1791919/93‑1 (MQ=25)
cccTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:1860029/93‑1 (MQ=25)
cTCA‑‑CCCCG‑‑ACCCTCTCCCCCAGGGGGAGGGGG‑AAAAAACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa > 2:2480432/1‑93 (MQ=255)
cTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa < 1:5082802/93‑1 (MQ=37)
cTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa < 1:6424387/93‑1 (MQ=37)
tCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:4340204/93‑1 (MQ=37)
tCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:2478433/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:4383812/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:6055371/93‑1 (MQ=37)
cA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:3694200/93‑1 (MQ=37)
||
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑‑CCCTCA‑‑CCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAG‑AAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957000‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957000‑3957184
|
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑A‑‑CC < SRR4302542.567065/94‑1 (MQ=60)
GAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑A‑‑CCC < SRR4302542.2792463/94‑1 (MQ=60)
GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑A‑‑CCCTC < SRR4302542.3001961/94‑1 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑A‑‑Ccctct < SRR4302542.3232396/94‑6 (MQ=60)
GGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCC < SRR4302542.2168419/94‑1 (MQ=60)
GGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCC < SRR4302542.5055928/94‑1 (MQ=60)
GGTAGGTAAGAAACTGCGCGCCTATATGCCAGATATGAAACGGATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCC < SRR4302542.5490415/94‑1 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑GCCTCA‑‑CCCCG‑‑ACCCTCTCCC > SRR4302542.1135249/1‑94 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCC‑‑CCCCG‑‑ACCCTCTCCC < SRR4302542.2844171/94‑1 (MQ=60)
TAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCGCCC‑‑CTCTCCCA > SRR4302542.4885567/1‑94 (MQ=60)
TAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCA < SRR4302542.3286752/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCAC < SRR4302542.2970815/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCAC < SRR4302542.3055902/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCAC < SRR4302542.4713864/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCAC < SRR4302542.7472171/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAG < SRR4302542.4478952/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAG < SRR4302542.5447539/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGG < SRR4302542.2829021/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGG < SRR4302542.6363149/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGG > SRR4302542.1970903/1‑94 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGG < SRR4302542.4496374/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGG < SRR4302542.4079617/94‑1 (MQ=60)
AGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGA < SRR4302542.369901/94‑1 (MQ=60)
AGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGA < SRR4302542.6652291/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302542.1485655/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302542.1182549/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302542.2057604/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302542.7215274/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302542.5090418/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302542.7479868/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302542.878841/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302542.1403049/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302542.4654945/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302542.6569211/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATCG‑CCCCCA‑‑CCCCG‑‑A‑‑Cccccccccacagggtgaggg > SRR4302542.6754600/1‑74 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302542.7169088/94‑1 (MQ=60)
GCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG < SRR4302542.5798611/94‑1 (MQ=60)
GCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG < SRR4302542.3832795/94‑1 (MQ=60)
CGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGA < SRR4302542.7480765/94‑1 (MQ=60)
GCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAA < SRR4302542.6396000/94‑1 (MQ=60)
GCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAA < SRR4302542.1370482/94‑1 (MQ=60)
CGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAA < SRR4302542.4905168/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAA < SRR4302542.5555695/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302542.5515071/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCC‑‑CCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACT < SRR4302542.5042846/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT < SRR4302542.3849359/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302542.1953828/94‑1 (MQ=60)
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A < SRR4302542.3308626/94‑1 (MQ=60)
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A < SRR4302542.3032139/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA < SRR4302542.4271006/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302542.2316609/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302542.4383097/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302542.4315759/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302542.884522/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302542.4264430/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302542.3643709/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GG < SRR4302542.1367019/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GG < SRR4302542.1008029/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GGC < SRR4302542.2338444/94‑1 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑Ggcc < SRR4302542.6154921/94‑4 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑Ggcc < SRR4302542.380397/94‑4 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCT < SRR4302542.3474788/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCC‑‑CCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTT < SRR4302542.6196828/94‑1 (MQ=55)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCCCA‑‑CCCCC‑‑ACCCCCTCCCCCAGGGGGAGGGAGAAAAAACTCAAA‑GCCTT > SRR4302542.1161641/1‑94 (MQ=50)
ATATGAAACGTATTGCTGTTGCGAGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTT < SRR4302542.1535720/94‑1 (MQ=57)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTC < SRR4302542.4337155/94‑1 (MQ=60)
TAGGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTC < SRR4302542.4337154/94‑1 (MQ=47)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302542.2921384/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302542.4700438/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302542.47862/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302542.3607036/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302542.1866599/94‑1 (MQ=60)
TGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTC < SRR4302542.5798764/94‑1 (MQ=60)
GAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCC < SRR4302542.6709861/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCC‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302542.5146793/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302542.3452299/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302542.6711685/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302542.3518513/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302542.601026/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302542.2125023/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCCCAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCct > SRR4302542.5019214/1‑92 (MQ=56)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTG < SRR4302542.2392447/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302542.7142791/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302542.3589047/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302542.2556988/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302542.6697391/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302542.2674336/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCCCTCCCCCCGGGAGAGGGGGAAAACACTC‑AAGGCCTTCTCCTGG > SRR4302542.1045351/1‑94 (MQ=52)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGGGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGA < SRR4302542.4863087/94‑1 (MQ=60)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGA < SRR4302542.324678/94‑1 (MQ=60)
TATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑GCCCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAG < SRR4302542.1218916/94‑1 (MQ=56)
TTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302542.3438042/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302542.7492198/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302542.1051950/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302542.1822018/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302542.1212769/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGG < SRR4302542.4726072/94‑1 (MQ=60)
GCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGC < SRR4302542.795035/94‑1 (MQ=60)
CTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCC‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCC < SRR4302542.1615136/94‑1 (MQ=60)
CTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCC < SRR4302542.6041577/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCT < SRR4302542.6057865/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCT < SRR4302542.257168/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302542.7478294/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302542.5558270/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302542.7481660/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302542.4444204/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302542.1473782/94‑1 (MQ=60)
TGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGC < SRR4302542.2116562/94‑1 (MQ=60)
TGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGC < SRR4302542.647283/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302542.7300487/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302542.529757/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302542.1569383/94‑1 (MQ=60)
GGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATT < SRR4302542.3120258/94‑1 (MQ=60)
TTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302542.1175029/94‑1 (MQ=60)
TAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302542.1872084/94‑1 (MQ=60)
TAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302542.2002170/94‑1 (MQ=60)
TAAGTGCGCGCTGAA‑G‑CCCCCC‑‑CCCCGGCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302542.5558491/94‑1 (MQ=34)
AAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302542.3074310/94‑1 (MQ=60)
AAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302542.5321423/94‑1 (MQ=60)
AGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302542.4087912/94‑1 (MQ=60)
GTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGATAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302542.5664980/94‑1 (MQ=58)
TGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302542.2340648/94‑1 (MQ=60)
TGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302542.4563497/94‑1 (MQ=60)
TGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302542.4384151/94‑1 (MQ=60)
TGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302542.5915007/94‑1 (MQ=60)
TGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302542.3311281/94‑1 (MQ=60)
GGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302542.5034705/94‑1 (MQ=60)
GCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302542.7413146/94‑1 (MQ=60)
CGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302542.4557625/94‑1 (MQ=60)
GCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTA < SRR4302542.1493555/94‑1 (MQ=60)
CGCTGAT‑G‑CCCTCACCCCCCC‑‑C‑‑CTCTCCCCCAGGGGGGGGGGGAAAACACCC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAC > SRR4302542.6137994/1‑94 (MQ=36)
CGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAC < SRR4302542.4118965/94‑1 (MQ=60)
GCTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302542.674738/94‑1 (MQ=60)
CTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302542.2427283/94‑1 (MQ=60)
CTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302542.675696/94‑1 (MQ=60)
CTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302542.5584270/94‑1 (MQ=60)
CTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302542.2120900/94‑1 (MQ=60)
CTGAT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302542.1648565/94‑1 (MQ=60)
AT‑G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAC < SRR4302542.1178513/94‑1 (MQ=60)
G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCT < SRR4302542.5181281/94‑1 (MQ=60)
G‑CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCT < SRR4302542.2973605/94‑1 (MQ=60)
CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302542.1572066/94‑1 (MQ=60)
CCCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302542.1807466/94‑1 (MQ=60)
CCTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTA < SRR4302542.446184/94‑1 (MQ=60)
CTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA < SRR4302542.4937128/94‑1 (MQ=60)
CTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA < SRR4302542.132349/94‑1 (MQ=60)
CTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA < SRR4302542.6487695/94‑1 (MQ=60)
CTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA > SRR4302542.3744297/1‑94 (MQ=60)
CTCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA < SRR4302542.5132197/94‑1 (MQ=60)
TCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302542.987900/94‑1 (MQ=60)
TCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302542.2502473/94‑1 (MQ=60)
TCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302542.2642318/94‑1 (MQ=60)
TCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > SRR4302542.1651915/1‑94 (MQ=60)
TCA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302542.4382849/94‑1 (MQ=60)
CA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302542.6113987/94‑1 (MQ=60)
CA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302542.2301545/94‑1 (MQ=60)
CA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG > SRR4302542.7448755/1‑94 (MQ=60)
CA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302542.3730759/94‑1 (MQ=60)
CA‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302542.4426831/94‑1 (MQ=60)
A‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302542.4192373/1‑94 (MQ=60)
A‑‑CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302542.7124273/1‑94 (MQ=60)
ctccccggccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302542.3157003/84‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGGGAAAAAACTCAAA‑GGCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302542.1509361/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302542.538033/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302542.3947050/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302542.2120753/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302542.2282573/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302542.6958750/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302542.2553434/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302542.7061466/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302542.3240988/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGCACAGCACCTTAATGATG > SRR4302542.457800/1‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGGACAGCACCTTAATGATGTGA > SRR4302542.5775074/5‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302542.1597883/5‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302542.4371402/5‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTATAGCACCTTAATGATGTGAT > SRR4302542.3375450/4‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302542.1957560/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302542.1355831/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302542.1273617/4‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302542.6059245/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302542.6728567/4‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302542.6372035/4‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT < SRR4302542.5941124/91‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCATCTTAATGATGTGATAT > SRR4302542.7468164/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302542.7372748/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302542.7277284/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302542.6939042/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302542.690178/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302542.6331728/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA < SRR4302542.7360576/92‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302542.1100413/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302542.1035222/3‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302542.4192624/1‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC < SRR4302542.668561/94‑1 (MQ=60)
|
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGAT‑G‑CCCTCA‑‑CCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957000‑3957184
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
