Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,421 2 bp→GC coding (381‑382/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,4210CG100.0% 1578.4 / NA 467G128R (GGA→CGA) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (231/236);  total (231/236)
*NC_0009134,001,4220GC99.8% 1587.0 / NA 467D127E (GAC→GAG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (230/236);  minor base A (1/0);  total (231/236)
Fisher's exact test for biased strand distribution p-value = 4.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 471 total aligned reads displayed.

TAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTT  >  NC_000913/4001334‑4001508
                                                                                       ||                                                                                      
taataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAAtcgctcgc                                                                                    >  1:7262642/1‑93 (MQ=255)
  ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCg                                                                                  >  2:2302280/1‑93 (MQ=255)
  ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCg                                                                                  >  2:3232542/1‑93 (MQ=255)
   taGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                 <  2:4476506/93‑1 (MQ=255)
   taGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                 >  1:3506425/1‑93 (MQ=255)
    aGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAg                                                                                <  1:7025517/93‑1 (MQ=255)
     ggTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                               >  1:4625123/1‑93 (MQ=255)
      gTAGCGAACCAAAAGTCCAAAGCTGGACTAACACGCCCCATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGa                                                                              <  1:759869/93‑1 (MQ=255)
       tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaa                                                                             >  1:1177628/1‑93 (MQ=255)
       tAGCGAACCAAAAGCCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaa                                                                             >  2:1052103/1‑93 (MQ=255)
            aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                        >  2:416903/1‑93 (MQ=255)
            aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                        >  2:7371965/1‑93 (MQ=255)
             aCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcat                                                                       >  1:5388467/1‑93 (MQ=255)
              ccAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcatc                                                                      <  2:4344037/93‑1 (MQ=255)
              caaaaaGCCCCCAGCTGACCTAACACGCCACATATCGCCAGAACCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcatc                                                                      <  1:3767513/91‑1 (MQ=255)
               cAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcc                                                                     >  2:5998347/1‑93 (MQ=255)
               cAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcc                                                                     <  2:7225048/93‑1 (MQ=255)
               cAAAAGGCCCCCGCTGGACTAACACCCCCCAATTCCCCAGAAACCCCGCCCGGCATTGGATCCGGCGGAATCGCTCGCCGAGGAAAATCATcc                                                                     <  1:2398146/93‑1 (MQ=255)
                aaaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATccc                                                                    >  1:6425492/1‑93 (MQ=255)
                 aaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcccc                                                                   >  2:4599771/1‑93 (MQ=255)
                 aaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATcccc                                                                   <  1:3847183/93‑1 (MQ=255)
                   aGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCTGAATCGCTCGCCGAGGAAAATCATCCCCAg                                                                 >  1:6568068/1‑93 (MQ=255)
                   aGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAg                                                                 >  1:1065146/1‑93 (MQ=255)
                     tCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGca                                                               >  2:2233582/1‑93 (MQ=255)
                        acaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACaa                                                            <  1:2186085/93‑1 (MQ=255)
                        acaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACaa                                                            >  1:271716/1‑93 (MQ=255)
                           gCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGt                                                         <  2:3119817/93‑1 (MQ=255)
                            cTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGtt                                                        >  2:542942/1‑93 (MQ=255)
                            cTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGtt                                                        <  1:4117368/93‑1 (MQ=255)
                                aCTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAcc                                                    <  1:6904606/93‑1 (MQ=255)
                                aCTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAcc                                                    >  2:260390/1‑93 (MQ=255)
                                 cTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCa                                                   <  1:6524337/93‑1 (MQ=255)
                                 cTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCa                                                   <  1:1604359/93‑1 (MQ=255)
                                  tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAg                                                  >  1:7168472/1‑93 (MQ=255)
                                  tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAg                                                  >  2:6847683/1‑93 (MQ=255)
                                  tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAg                                                  >  1:1961586/1‑93 (MQ=255)
                                  tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAg                                                  <  2:1746884/93‑1 (MQ=255)
                                   aaCACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                 >  2:2836637/1‑93 (MQ=255)
                                   aaCACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                 >  2:3754910/1‑93 (MQ=255)
                                   aaCACGCCACATATCGCCAGAATCACCGCCAGCCATTGCACCGGGCGAAATGGCTCGCCGAGGAAAATCATCCCCAGCCCAATGTTCACAAgg                                                 >  1:671649/1‑92 (MQ=255)
                                    acacGCCCCATATCGCCAGAATCACCGCCAGCAATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCg                                                >  1:5090529/1‑93 (MQ=255)
                                    acacGCCACATGTCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCg                                                <  2:5736372/93‑1 (MQ=255)
                                    acacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCg                                                <  1:5897682/93‑1 (MQ=255)
                                    acacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCg                                                >  2:4909220/1‑93 (MQ=255)
                                    aaacGCCACATATCGCCAGAATCACCGCCAGCCATTCCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCg                                                >  1:1400653/3‑93 (MQ=255)
                                     cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                               <  1:6192845/93‑1 (MQ=255)
                                     cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                               <  1:3059088/93‑1 (MQ=255)
                                       cGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGt                                             <  2:1844495/93‑1 (MQ=255)
                                        gCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGtt                                            >  1:4918100/1‑93 (MQ=255)
                                        gCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGtt                                            <  1:3918244/93‑1 (MQ=255)
                                          cacaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaa                                          >  2:4754546/1‑93 (MQ=255)
                                          cacaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaa                                          <  2:1510464/93‑1 (MQ=255)
                                           acaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                         >  2:2115398/1‑93 (MQ=255)
                                           acaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                         >  2:1679314/1‑93 (MQ=255)
                                           acaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                         <  1:3267120/93‑1 (MQ=255)
                                            caTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                        >  1:5234698/1‑93 (MQ=255)
                                            caTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                        <  1:2072940/93‑1 (MQ=255)
                                            caTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                        <  1:1793570/93‑1 (MQ=255)
                                             atatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaataa                                       >  2:2911184/1‑93 (MQ=255)
                                              tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATaaa                                      <  2:7145225/93‑1 (MQ=255)
                                              tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATaaa                                      <  1:2223709/93‑1 (MQ=255)
                                               atCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAg                                     <  2:3018604/93‑1 (MQ=255)
                                                tCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGt                                    <  2:6282466/93‑1 (MQ=255)
                                                 cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAgca                                   <  1:578047/93‑3 (MQ=255)
                                                 cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTa                                   <  1:2621677/93‑1 (MQ=255)
                                                   ccAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAAc                                 <  2:891234/93‑1 (MQ=255)
                                                    cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAGTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAcc                                >  2:5100266/1‑93 (MQ=255)
                                                     aGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCa                               >  2:5559927/1‑93 (MQ=255)
                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              <  2:3895417/93‑1 (MQ=255)
                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              >  1:6358521/1‑93 (MQ=255)
                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCaa                              <  2:6748977/93‑1 (MQ=255)
                                                      gAATCACCGCCAGCCATTGCATCCGGCAGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              <  2:6090889/93‑1 (MQ=255)
                                                       aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAg                             >  2:3991885/1‑93 (MQ=255)
                                                       aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAg                             >  2:5283764/1‑93 (MQ=255)
                                                         tCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGc                           >  2:1278704/1‑93 (MQ=255)
                                                         tCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGc                           >  1:4774619/1‑93 (MQ=255)
                                                          cACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                          >  2:7008067/1‑93 (MQ=255)
                                                               ccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgctt                     <  1:1530854/93‑5 (MQ=255)
                                                               ccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgctt                     >  1:176343/1‑89 (MQ=255)
                                                                  gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                  >  1:1001377/1‑93 (MQ=255)
                                                                  gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                  >  1:3982067/1‑93 (MQ=255)
                                                                   ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAg                 <  1:2921822/93‑1 (MQ=255)
                                                                   ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAg                 <  2:6414702/93‑1 (MQ=255)
                                                                    caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGc                >  1:5559485/1‑93 (MQ=255)
                                                                    caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGc                >  2:3835357/1‑93 (MQ=255)
                                                                     aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa               <  1:6011996/93‑1 (MQ=255)
                                                                      ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat              >  1:4199375/1‑93 (MQ=255)
                                                                       tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCata             <  1:924654/93‑1 (MQ=255)
                                                                        gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat            <  1:4353448/93‑1 (MQ=255)
                                                                         cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg           <  1:312255/93‑1 (MQ=255)
                                                                         cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg           <  2:6615981/93‑1 (MQ=255)
                                                                           tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt         >  1:7382675/1‑93 (MQ=255)
                                                                           tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt         >  2:2656557/1‑93 (MQ=255)
                                                                              ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt      <  1:3610775/93‑1 (MQ=255)
                                                                              ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt      <  2:1148015/93‑1 (MQ=255)
                                                                              ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt      <  2:2468029/93‑1 (MQ=255)
                                                                               gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt     >  2:1350510/1‑93 (MQ=255)
                                                                               gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGAtt     >  2:3515618/1‑93 (MQ=255)
                                                                                 ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGt   >  1:3404586/1‑93 (MQ=255)
                                                                                 ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGt   <  1:3006699/93‑1 (MQ=255)
                                                                                       ||                                                                                      
TAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTT  >  NC_000913/4001334‑4001508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 262 total aligned reads displayed.
GCGCGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCA  >  NC_000913/4001328‑4001510
                                                                                             |                                                                                         
GCGCGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCG                                                                                           <  SRR4302542.644049/94‑1 (MQ=60)
     ATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGC                                                                                      >  SRR4302542.2209733/1‑94 (MQ=60)
     ATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGC                                                                                      >  SRR4302542.1104052/1‑94 (MQ=60)
     ATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGC                                                                                      >  SRR4302542.7333840/1‑94 (MQ=60)
       AATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCG                                                                                    >  SRR4302542.2025579/1‑94 (MQ=60)
       AATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCG                                                                                    >  SRR4302542.7179191/1‑94 (MQ=60)
        ATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGA                                                                                   >  SRR4302542.3539219/1‑94 (MQ=60)
        ATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGA                                                                                   >  SRR4302542.1107484/1‑94 (MQ=60)
         TAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAG                                                                                  <  SRR4302542.1284380/94‑1 (MQ=60)
         TAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAG                                                                                  <  SRR4302542.2888896/94‑1 (MQ=60)
          AGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGG                                                                                 >  SRR4302542.4670316/1‑94 (MQ=60)
          AGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGAGGAATCGATCGCCGAGG                                                                                 >  SRR4302542.2242025/1‑94 (MQ=60)
           GGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGA                                                                                <  SRR4302542.5098806/94‑1 (MQ=60)
           GGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGA                                                                                <  SRR4302542.2880230/94‑1 (MQ=60)
            GTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAA                                                                               >  SRR4302542.1187802/1‑94 (MQ=60)
            GTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAA                                                                               >  SRR4302542.7218921/1‑94 (MQ=60)
            GTAGCGAACCAAAAGTCCAAAGCTGGACTAACACGCCCCATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAA                                                                               <  SRR4302542.766454/94‑1 (MQ=60)
               GCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGTATCCGGCGGAATCGCTCGCCGAGGAAAAT                                                                            <  SRR4302542.1160025/94‑1 (MQ=60)
               GCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAAT                                                                            <  SRR4302542.1424026/94‑1 (MQ=60)
               GCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAAT                                                                            <  SRR4302542.375095/94‑1 (MQ=60)
               GCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAAT                                                                            <  SRR4302542.643511/94‑1 (MQ=60)
                CGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATC                                                                           <  SRR4302542.3864703/94‑1 (MQ=60)
                CGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATC                                                                           >  SRR4302542.3256830/1‑94 (MQ=60)
                CGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATC                                                                           >  SRR4302542.3634282/1‑94 (MQ=60)
                 GAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCA                                                                          <  SRR4302542.6017160/94‑1 (MQ=60)
                 GAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCA                                                                          >  SRR4302542.3472020/1‑94 (MQ=60)
                  AACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT                                                                         >  SRR4302542.839450/1‑94 (MQ=60)
                  AACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT                                                                         <  SRR4302542.4670247/94‑1 (MQ=60)
                  AACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT                                                                         <  SRR4302542.3146041/94‑1 (MQ=60)
                  AACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT                                                                         >  SRR4302542.5440799/1‑94 (MQ=60)
                  AACCAAAAGCCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT                                                                         <  SRR4302542.7396042/94‑1 (MQ=60)
                   ACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATC                                                                        >  SRR4302542.5258322/1‑94 (MQ=60)
                   ACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATC                                                                        >  SRR4302542.6288382/1‑94 (MQ=60)
                     CAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      >  SRR4302542.3490381/1‑94 (MQ=60)
                     CAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      >  SRR4302542.6488616/1‑94 (MQ=60)
                     CAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      >  SRR4302542.6970511/1‑94 (MQ=60)
                     CAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      <  SRR4302542.482246/94‑1 (MQ=60)
                      AAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCC                                                                     >  SRR4302542.1818875/1‑94 (MQ=60)
                      AAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCC                                                                     <  SRR4302542.4274995/94‑1 (MQ=60)
                       AAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCA                                                                    >  SRR4302542.3554824/1‑94 (MQ=60)
                       AAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCA                                                                    >  SRR4302542.936710/1‑94 (MQ=60)
                       AAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCA                                                                    <  SRR4302542.7027702/94‑1 (MQ=60)
                       AAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCA                                                                    <  SRR4302542.3885198/94‑1 (MQ=60)
                        AAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCTGAATCGCTCGCCGAGGAAAATCATCCCCAG                                                                   >  SRR4302542.6632785/1‑94 (MQ=60)
                        AAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAG                                                                   >  SRR4302542.1239454/1‑94 (MQ=60)
                        AAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAG                                                                   <  SRR4302542.2146541/94‑1 (MQ=60)
                        AAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAG                                                                   >  SRR4302542.2045065/1‑94 (MQ=60)
                         AGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGC                                                                  >  SRR4302542.2740561/1‑94 (MQ=60)
                         AGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGC                                                                  >  SRR4302542.7076422/1‑94 (MQ=60)
                         AGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGC                                                                  >  SRR4302542.1723022/1‑94 (MQ=60)
                          GTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCA                                                                 >  SRR4302542.7183584/1‑94 (MQ=60)
                          GTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCA                                                                 <  SRR4302542.4219625/94‑1 (MQ=60)
                          GTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCA                                                                 >  SRR4302542.2266860/1‑94 (MQ=60)
                            CCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACA                                                               <  SRR4302542.6954767/94‑1 (MQ=60)
                            CCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACA                                                               >  SRR4302542.3416181/1‑94 (MQ=60)
                             CACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAA                                                              >  SRR4302542.370214/1‑94 (MQ=60)
                             CACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAA                                                              >  SRR4302542.4415328/1‑94 (MQ=60)
                               CAGCTGGACTAACACGCCACATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATG                                                            <  SRR4302542.6039159/94‑1 (MQ=60)
                                AGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGT                                                           >  SRR4302542.7422589/1‑94 (MQ=60)
                                AGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGT                                                           >  SRR4302542.49333/1‑94 (MQ=60)
                                 GCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTT                                                          <  SRR4302542.225507/94‑1 (MQ=60)
                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCTGAGGAATATCATCCCCAGCACAATGTTC                                                         <  SRR4302542.5717334/94‑1 (MQ=60)
                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTC                                                         >  SRR4302542.3843310/1‑94 (MQ=60)
                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTC                                                         <  SRR4302542.2933021/94‑1 (MQ=60)
                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTC                                                         <  SRR4302542.4157928/94‑1 (MQ=60)
                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTC                                                         >  SRR4302542.6652094/1‑94 (MQ=60)
                                   TGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        <  SRR4302542.2458042/94‑1 (MQ=60)
                                   TGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        <  SRR4302542.4289435/94‑1 (MQ=60)
                                   TGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        >  SRR4302542.7096301/1‑94 (MQ=60)
                                     gatttACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGTGGAATCGCTCGCCGTGGAAAATCATCCCCACTACAATGGTCACC                                                      >  SRR4302542.940406/6‑94 (MQ=60)
                                      ACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCA                                                     >  SRR4302542.3977410/1‑94 (MQ=60)
                                      ACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCA                                                     <  SRR4302542.6972393/94‑1 (MQ=60)
                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    <  SRR4302542.6588630/94‑1 (MQ=60)
                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    <  SRR4302542.5131743/94‑1 (MQ=60)
                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    >  SRR4302542.1978547/1‑94 (MQ=60)
                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    <  SRR4302542.5680745/94‑1 (MQ=60)
                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    >  SRR4302542.7238786/1‑94 (MQ=60)
                                        TAACACGCCACATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGC                                                   <  SRR4302542.10250/94‑1 (MQ=60)
                                        TAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGC                                                   <  SRR4302542.5882690/94‑1 (MQ=60)
                                        TAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGC                                                   >  SRR4302542.1711506/1‑94 (MQ=60)
                                        TAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCACCGGGCGAAATGGCTCGCCGAGGAAAATCATCCCCAGCCCAATGTTCACaagg                                                   >  SRR4302542.677441/1‑90 (MQ=60)
                                         AACACGCCCCATATCGCCAGAATCACCGCCAGCAATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCG                                                  >  SRR4302542.5140005/1‑94 (MQ=60)
                                         AACACGCCACATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCG                                                  <  SRR4302542.6519734/94‑1 (MQ=60)
                                          ACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGG                                                 <  SRR4302542.2476973/94‑1 (MQ=60)
                                          ACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGG                                                 <  SRR4302542.5954863/94‑1 (MQ=60)
                                           CACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGG                                                <  SRR4302542.6253124/94‑1 (MQ=60)
                                           CACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGG                                                <  SRR4302542.1580814/94‑1 (MQ=60)
                                           CACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGG                                                <  SRR4302542.4709627/94‑1 (MQ=60)
                                             CGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTT                                              >  SRR4302542.4965926/1‑94 (MQ=60)
                                              GCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTA                                             >  SRR4302542.3109768/1‑94 (MQ=60)
                                              GCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTA                                             <  SRR4302542.3956905/94‑1 (MQ=60)
                                                CACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAGTCATCCCCAGCACAATGTTCACCAGCGGGTTAAT                                           <  SRR4302542.4702698/94‑1 (MQ=60)
                                                CACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAAT                                           <  SRR4302542.1375912/94‑1 (MQ=60)
                                                CACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAAT                                           >  SRR4302542.1543350/1‑94 (MQ=60)
                                                 acatccccCCAGAATCGCCGCCAGCCATGGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCCCCAGCGGGTTAATA                                          <  SRR4302542.6606504/86‑1 (MQ=60)
                                                 ACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATA                                          >  SRR4302542.5285595/1‑94 (MQ=60)
                                                 ACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATA                                          >  SRR4302542.655200/1‑94 (MQ=60)
                                                 ACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATA                                          <  SRR4302542.164208/94‑1 (MQ=60)
                                                 ACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATA                                          <  SRR4302542.3297964/94‑1 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         <  SRR4302542.1809130/94‑1 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         <  SRR4302542.1594352/94‑1 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         <  SRR4302542.3160873/94‑1 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         <  SRR4302542.2090854/94‑1 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         >  SRR4302542.2270613/1‑94 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         >  SRR4302542.2128558/1‑94 (MQ=60)
                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         <  SRR4302542.3218232/94‑1 (MQ=60)
                                                   ATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAA                                        <  SRR4302542.297093/94‑1 (MQ=60)
                                                    TATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAG                                       <  SRR4302542.4123478/94‑1 (MQ=60)
                                                    TATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAG                                       <  SRR4302542.5533147/94‑1 (MQ=60)
                                                     ATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGT                                      >  SRR4302542.40095/1‑94 (MQ=60)
                                                     ATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGT                                      <  SRR4302542.6994216/94‑1 (MQ=60)
                                                     ATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGC                                      <  SRR4302542.1778991/94‑1 (MQ=60)
                                                      TCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTA                                     <  SRR4302542.5757072/94‑1 (MQ=60)
                                                      TCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTA                                     >  SRR4302542.1993888/1‑94 (MQ=60)
                                                      TCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTA                                     <  SRR4302542.3921366/94‑1 (MQ=60)
                                                       CGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAA                                    >  SRR4302542.6694777/1‑94 (MQ=60)
                                                       CGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAA                                    <  SRR4302542.2647011/94‑1 (MQ=60)
                                                       CGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAA                                    <  SRR4302542.583051/94‑1 (MQ=60)
                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACC                                  <  SRR4302542.41968/94‑1 (MQ=60)
                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACC                                  <  SRR4302542.233812/94‑1 (MQ=60)
                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACC                                  <  SRR4302542.4694264/94‑1 (MQ=60)
                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACC                                  >  SRR4302542.2694463/1‑94 (MQ=60)
                                                          CAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCA                                 <  SRR4302542.2003482/94‑1 (MQ=60)
                                                          CAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCA                                 <  SRR4302542.2685498/94‑1 (MQ=60)
                                                           AGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAA                                <  SRR4302542.3339671/94‑1 (MQ=60)
                                                            GAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302542.6342956/94‑1 (MQ=60)
                                                            GAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302542.1070087/94‑1 (MQ=60)
                                                            GAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302542.6548304/94‑1 (MQ=60)
                                                            GAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302542.3792821/94‑1 (MQ=60)
                                                             AATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGG                              <  SRR4302542.1510082/94‑1 (MQ=60)
                                                             AATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGG                              >  SRR4302542.5371357/1‑94 (MQ=60)
                                                             AATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGG                              <  SRR4302542.3966753/94‑1 (MQ=60)
                                                             AATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGG                              >  SRR4302542.6234200/1‑94 (MQ=60)
                                                              ATCCCCACCAGCCATTGCAGCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGC                             <  SRR4302542.4330928/94‑1 (MQ=60)
                                                              ATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGC                             >  SRR4302542.4821155/1‑94 (MQ=60)
                                                              ATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGC                             >  SRR4302542.7400259/1‑94 (MQ=60)
                                                                CACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTC                           >  SRR4302542.7284853/1‑94 (MQ=60)
                                                                CACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTC                           >  SRR4302542.6385316/1‑94 (MQ=60)
                                                                CACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTC                           >  SRR4302542.6484017/1‑94 (MQ=60)
                                                                CACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTC                           <  SRR4302542.659861/94‑1 (MQ=60)
                                                                  CCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgc                         <  SRR4302542.412726/94‑3 (MQ=60)
                                                                   CGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgct                        >  SRR4302542.456861/1‑91 (MQ=60)
                                                                   CGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCgct                        <  SRR4302542.7524735/94‑4 (MQ=60)
                                                                    GCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgctt                       >  SRR4302542.177839/1‑90 (MQ=60)
                                                                    GCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgctt                       >  SRR4302542.1893604/1‑90 (MQ=60)
                                                                    GCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgctt                       >  SRR4302542.4123218/1‑90 (MQ=60)
                                                                     CCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgcttc                      >  SRR4302542.3327232/1‑89 (MQ=60)
                                                                     CCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgcttc                      <  SRR4302542.1544074/94‑6 (MQ=60)
                                                                     CCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgcttc                      >  SRR4302542.746821/1‑89 (MQ=60)
                                                                     CCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgcttc                      >  SRR4302542.3328521/1‑89 (MQ=60)
                                                                      CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                     >  SRR4302542.385210/1‑94 (MQ=60)
                                                                      CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                     >  SRR4302542.7521968/1‑94 (MQ=60)
                                                                      CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                     <  SRR4302542.2971152/94‑1 (MQ=60)
                                                                       AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                    >  SRR4302542.1009994/1‑94 (MQ=60)
                                                                       AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                    >  SRR4302542.3625013/1‑94 (MQ=60)
                                                                       AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                    >  SRR4302542.4021346/1‑94 (MQ=60)
                                                                        GCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAG                   >  SRR4302542.4036338/1‑94 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                  >  SRR4302542.5923466/1‑94 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                  <  SRR4302542.2949822/94‑1 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                  >  SRR4302542.1812968/1‑94 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                  >  SRR4302542.5613497/1‑94 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                  <  SRR4302542.6616744/94‑1 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                  <  SRR4302542.6616743/94‑1 (MQ=60)
                                                                         CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                  >  SRR4302542.3056687/1‑94 (MQ=60)
                                                                          CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                 >  SRR4302542.1788493/1‑94 (MQ=60)
                                                                          CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                 >  SRR4302542.372558/1‑94 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                <  SRR4302542.5221299/94‑1 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                <  SRR4302542.6070208/94‑1 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                <  SRR4302542.7287943/94‑1 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                >  SRR4302542.5263291/1‑94 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                <  SRR4302542.3118614/94‑1 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                >  SRR4302542.3319661/1‑94 (MQ=60)
                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCAT                <  SRR4302542.5372625/94‑1 (MQ=60)
                                                                            TTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATA               >  SRR4302542.6098440/1‑94 (MQ=60)
                                                                             TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT              <  SRR4302542.3020706/94‑1 (MQ=60)
                                                                             TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT              <  SRR4302542.1617305/94‑1 (MQ=60)
                                                                             TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT              <  SRR4302542.1059449/94‑1 (MQ=60)
                                                                             TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT              >  SRR4302542.5525425/1‑94 (MQ=60)
                                                                             TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATAT              <  SRR4302542.932611/94‑1 (MQ=60)
                                                                              GCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATG             <  SRR4302542.4396221/94‑1 (MQ=60)
                                                                               CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG            <  SRR4302542.5571911/94‑1 (MQ=60)
                                                                                ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT           >  SRR4302542.7454956/1‑94 (MQ=60)
                                                                                ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT           >  SRR4302542.903221/1‑94 (MQ=60)
                                                                                 TCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG          <  SRR4302542.4971972/94‑1 (MQ=60)
                                                                                 TCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG          <  SRR4302542.5978484/94‑1 (MQ=60)
                                                                                   CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT        <  SRR4302542.2209783/94‑1 (MQ=60)
                                                                                   CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT        <  SRR4302542.6203886/94‑1 (MQ=60)
                                                                                    GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT       <  SRR4302542.7336125/94‑1 (MQ=60)
                                                                                    GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT       >  SRR4302542.3929318/1‑94 (MQ=60)
                                                                                     GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG      <  SRR4302542.3001086/94‑1 (MQ=60)
                                                                                     GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG      <  SRR4302542.2169737/94‑1 (MQ=60)
                                                                                      CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT     >  SRR4302542.3436503/1‑94 (MQ=60)
                                                                                      CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT     >  SRR4302542.1360584/1‑94 (MQ=60)
                                                                                       GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT    <  SRR4302542.3035448/94‑1 (MQ=60)
                                                                                       GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT    <  SRR4302542.3074543/94‑1 (MQ=60)
                                                                                       GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT    >  SRR4302542.4198228/1‑94 (MQ=60)
                                                                                       GGAATCGCTCGCCGAGGAAAATCATCCCCAACACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT    <  SRR4302542.3063499/94‑1 (MQ=60)
                                                                                        GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC   <  SRR4302542.6835473/94‑1 (MQ=60)
                                                                                        GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC   >  SRR4302542.1188191/1‑94 (MQ=60)
                                                                                         AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA  >  SRR4302542.2524376/1‑94 (MQ=60)
                                                                                             |                                                                                         
GCGCGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCA  >  NC_000913/4001328‑4001510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑