Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,486 2 bp→GC coding (316‑317/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,4860CG99.6% 1519.6 / NA 450R106A (CGG→GCG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (2/0);  new base G (239/209);  total (241/209)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*NC_0009134,001,4870GC99.8% 1528.7 / NA 450R106A (CGG→GCG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (240/209);  total (241/209)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 451 total aligned reads displayed.

AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTC  >  NC_000913/4001399‑4001578
                                                                                       ||                                                                                           
agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                                                                                         >  1:381887/1‑93 (MQ=255)
 gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                                                                                        >  1:1001377/1‑93 (MQ=255)
 gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                                                                                        >  2:2836163/1‑93 (MQ=255)
  ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAg                                                                                       >  1:3996912/1‑93 (MQ=255)
  ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAg                                                                                       <  1:6552151/93‑1 (MQ=255)
   caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                                                                                      >  2:6813260/1‑93 (MQ=255)
   caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                                                                                      >  2:5392030/1‑93 (MQ=255)
   caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                                                                                      >  1:5866591/1‑93 (MQ=255)
    aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                                                                                     <  1:5171042/93‑1 (MQ=255)
    aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                                                                                     <  2:272203/93‑1 (MQ=255)
    aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                                                                                     <  1:3089218/93‑1 (MQ=255)
     ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat                                                                                    >  1:3288611/1‑93 (MQ=255)
     ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat                                                                                    >  2:3821858/1‑93 (MQ=255)
     ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat                                                                                    >  1:4199375/1‑93 (MQ=255)
      tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata                                                                                   <  2:6676579/93‑1 (MQ=255)
      tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCata                                                                                   <  1:924654/93‑1 (MQ=255)
       gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat                                                                                  <  1:4353448/93‑1 (MQ=255)
       gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCTCGCTTCCAGCatat                                                                                  >  2:6013406/1‑93 (MQ=255)
        cATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATg                                                                                 <  2:2048841/93‑1 (MQ=255)
          tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt                                                                               >  1:7382675/1‑93 (MQ=255)
             ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt                                                                            <  1:3610775/93‑1 (MQ=255)
              gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt                                                                           <  1:2972617/93‑1 (MQ=255)
                ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGt                                                                         >  1:3404586/1‑93 (MQ=255)
                     cgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAcc                                                                    <  1:7477634/90‑1 (MQ=255)
                     cgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAcc                                                                    <  2:6116786/90‑1 (MQ=255)
                       ctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGc                                                                  >  2:243678/2‑93 (MQ=255)
                       ctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGc                                                                  >  1:5670669/2‑93 (MQ=255)
                        tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGcc                                                                 <  2:1003476/93‑1 (MQ=255)
                        tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGcc                                                                 >  2:5889843/1‑93 (MQ=255)
                        tCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGcc                                                                 >  2:4313186/1‑93 (MQ=255)
                           ccGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAg                                                              <  1:5829797/93‑1 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGa                                                             >  1:6230365/1‑93 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGa                                                             <  2:1918526/93‑1 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGa                                                             >  2:2621651/1‑93 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGa                                                             <  1:1946921/93‑1 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGCCTCCCTTCCACCATATGGTGATTGTTCACCGCCCAGa                                                             >  2:1135048/1‑93 (MQ=255)
                             gAGGAAAATCATCCCCAGCACAATGTTCACCAACGGGGTAATAAAGCAACCAAGGGTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAt                                                            >  1:2696661/1‑93 (MQ=255)
                               ggAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCGGCATATGGTGATTGTTCACCGCCCAGATaa                                                          >  2:7164226/1‑93 (MQ=255)
                               ggAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATaa                                                          >  1:4726376/1‑93 (MQ=255)
                               ggAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATaa                                                          >  2:5476394/1‑93 (MQ=255)
                               ggAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATaa                                                          <  1:2163102/93‑1 (MQ=255)
                                gAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATaaa                                                         >  2:524416/1‑93 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                       <  1:819313/93‑1 (MQ=255)
                                   aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAg                                                      <  1:1678476/93‑1 (MQ=255)
                                   aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAg                                                      >  1:3030641/1‑93 (MQ=255)
                                   aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGGTTCCCGCATATGGTGATTGTTGACCGCCCAGATAAAAAg                                                      >  1:1592214/1‑93 (MQ=255)
                                        tcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGcc                                                 >  1:2068808/1‑93 (MQ=255)
                                        tcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGcc                                                 >  2:1730325/1‑93 (MQ=255)
                                        tcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGcc                                                 >  2:2877225/1‑93 (MQ=255)
                                          cccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAg                                               <  1:5315618/93‑1 (MQ=255)
                                           ccAGCACAATGTTCACCAGCGGGTCAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGt                                              >  1:4989761/1‑93 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                             <  1:6448988/93‑1 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                             >  1:1431581/1‑93 (MQ=255)
                                                acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGcca                                         >  2:401943/1‑93 (MQ=255)
                                                acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGcca                                         >  2:305376/1‑93 (MQ=255)
                                                acaATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGcca                                         >  2:3163655/1‑93 (MQ=255)
                                                 caATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccac                                        >  2:2384472/1‑93 (MQ=255)
                                                  aaTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacc                                       >  2:5159943/1‑93 (MQ=255)
                                                  aaTGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacc                                       >  1:287070/1‑93 (MQ=255)
                                                   aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacca                                      >  2:743737/1‑93 (MQ=255)
                                                   aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacca                                      >  1:7148656/1‑93 (MQ=255)
                                                   aTGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacca                                      <  1:5544859/93‑1 (MQ=255)
                                                    tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCaa                                     >  2:3460256/1‑93 (MQ=255)
                                                    tGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCaa                                     >  2:128751/1‑93 (MQ=255)
                                                     gTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAt                                    <  2:6990326/93‑1 (MQ=255)
                                                      ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATc                                   >  1:6608700/1‑93 (MQ=255)
                                                       tCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCa                                  <  1:6300070/93‑1 (MQ=255)
                                                       tCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCa                                  <  2:3754860/93‑1 (MQ=255)
                                                       tCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCa                                  <  2:7499406/93‑1 (MQ=255)
                                                         aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc                                <  1:4600468/93‑1 (MQ=255)
                                                         aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc                                >  1:7269351/1‑93 (MQ=255)
                                                         aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCAAGTTGCCACCAATCAGc                                >  1:4426597/1‑93 (MQ=255)
                                                          ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa                               <  1:673085/93‑1 (MQ=255)
                                                          ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa                               <  2:6232677/93‑1 (MQ=255)
                                                          ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa                               <  2:6485636/93‑1 (MQ=255)
                                                            aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg                             >  1:1137409/1‑93 (MQ=255)
                                                            aGCGGGTTAATAAAGAAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACAAATCAGCACg                             >  1:7015275/1‑93 (MQ=255)
                                                             gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg                            <  1:6083948/93‑1 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                           <  2:3906659/93‑1 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                           >  1:317072/1‑93 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                          <  2:36861/93‑1 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                          <  2:1575040/93‑1 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                          <  1:2361651/93‑1 (MQ=255)
                                                                ggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCag                         >  2:4860414/1‑93 (MQ=255)
                                                                ggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCag                         >  2:2191573/1‑93 (MQ=255)
                                                                ggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCag                         >  2:6308420/1‑93 (MQ=255)
                                                                 gTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                        <  2:790933/93‑1 (MQ=255)
                                                                  ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag                       >  1:6765362/1‑93 (MQ=255)
                                                                  ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag                       <  2:4799878/93‑1 (MQ=255)
                                                                  ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag                       <  1:5974980/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCGCCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                     <  2:7317225/93‑1 (MQ=255)
                                                                     ataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACt                    >  1:5430027/1‑93 (MQ=255)
                                                                       aaaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGc                  <  1:1251804/93‑1 (MQ=255)
                                                                        aaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGcc                 >  1:4802962/1‑93 (MQ=255)
                                                                           tAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGc              >  2:1437912/1‑93 (MQ=255)
                                                                            aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa             >  2:656014/1‑93 (MQ=255)
                                                                            aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa             <  2:4222494/93‑1 (MQ=255)
                                                                            aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa             >  2:3327010/1‑93 (MQ=255)
                                                                              ccAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATa           <  1:3949350/93‑1 (MQ=255)
                                                                               cAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaa          >  2:451741/1‑93 (MQ=255)
                                                                                       ||                                                                                           
AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATTTTC  >  NC_000913/4001399‑4001578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 248 total aligned reads displayed.
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  NC_000913/4001393‑4001575
                                                                                              |                                                                                         
ACCGCCAGCCATTGCATCCGGCGAAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           >  SRR4302542.1575598/1‑94 (MQ=60)
     CAGCCATTGCATCCTGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      <  SRR4302542.7216480/94‑1 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      <  SRR4302542.2019144/94‑1 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      <  SRR4302542.2971152/94‑1 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      >  SRR4302542.7521968/1‑94 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302542.4021346/1‑94 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302542.4572743/1‑94 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302542.1009994/1‑94 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302542.664932/1‑94 (MQ=60)
       GCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAG                                                                                    >  SRR4302542.4036338/1‑94 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                                                                                   >  SRR4302542.1812968/1‑94 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                                                                                   >  SRR4302542.5923466/1‑94 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                                                                                   <  SRR4302542.2949822/94‑1 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                                                                                   >  SRR4302542.3056687/1‑94 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                                                                                   <  SRR4302542.6616744/94‑1 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGC                                                                                   <  SRR4302542.6616743/94‑1 (MQ=60)
         CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                                                                                  >  SRR4302542.372558/1‑94 (MQ=60)
         CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                                                                                  >  SRR4302542.1788493/1‑94 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 <  SRR4302542.6070208/94‑1 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 >  SRR4302542.5263291/1‑94 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 >  SRR4302542.2576437/1‑94 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 <  SRR4302542.3118614/94‑1 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 >  SRR4302542.3319661/1‑94 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCAT                                                                                 <  SRR4302542.5372625/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               >  SRR4302542.5525425/1‑94 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302542.3020706/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302542.1059449/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302542.1617305/94‑1 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302542.932611/94‑1 (MQ=60)
             GCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATG                                                                              <  SRR4302542.4396221/94‑1 (MQ=60)
              CATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG                                                                             <  SRR4302542.5571911/94‑1 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            <  SRR4302542.923972/94‑1 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            >  SRR4302542.4184797/1‑94 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            >  SRR4302542.7454956/1‑94 (MQ=60)
                TCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG                                                                           <  SRR4302542.5978484/94‑1 (MQ=60)
                TCCGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG                                                                           <  SRR4302542.4971972/94‑1 (MQ=60)
                  CGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT                                                                         <  SRR4302542.2209783/94‑1 (MQ=60)
                  CGGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT                                                                         <  SRR4302542.6203886/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302542.7336125/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302542.3644419/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        >  SRR4302542.3929318/1‑94 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG                                                                       <  SRR4302542.6992482/94‑1 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG                                                                       <  SRR4302542.2169737/94‑1 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      >  SRR4302542.1360584/1‑94 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      >  SRR4302542.3436503/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     <  SRR4302542.3035448/94‑1 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302542.4198228/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCAT‑CCCCAACACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     <  SRR4302542.3063499/94‑1 (MQ=60)
                       GAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC                                                                    <  SRR4302542.6835473/94‑1 (MQ=60)
                       GAATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC                                                                    >  SRR4302542.1188191/1‑94 (MQ=60)
                        AATCGCTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   >  SRR4302542.2524376/1‑94 (MQ=60)
                          tcgcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302542.3141050/90‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302542.7550921/91‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                >  SRR4302542.5847348/4‑94 (MQ=60)
                           cgcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302542.6361204/91‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                >  SRR4302542.771436/4‑94 (MQ=60)
                            gcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               >  SRR4302542.2971511/3‑94 (MQ=60)
                            gcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               <  SRR4302542.1634086/92‑1 (MQ=60)
                            gcTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGC                                                               >  SRR4302542.5725745/3‑94 (MQ=60)
                             CTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCC                                                              <  SRR4302542.6563229/94‑1 (MQ=60)
                             CTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCC                                                              >  SRR4302542.5672032/1‑94 (MQ=60)
                             CTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCC                                                              >  SRR4302542.2752015/1‑94 (MQ=60)
                              TCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCC                                                             <  SRR4302542.7349226/94‑1 (MQ=60)
                               CGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            >  SRR4302542.387623/1‑94 (MQ=60)
                               CGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            >  SRR4302542.4701716/1‑94 (MQ=60)
                               CGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            >  SRR4302542.2041243/1‑94 (MQ=60)
                               CGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            >  SRR4302542.6033814/1‑94 (MQ=60)
                                GCCGAGGAAAATCATCCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            <  SRR4302542.6229368/94‑1 (MQ=60)
                                GCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCTCCCAG                                                           <  SRR4302542.1258789/94‑1 (MQ=60)
                                GCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAG                                                           <  SRR4302542.4696599/94‑1 (MQ=60)
                                 CCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          >  SRR4302542.6291712/1‑94 (MQ=60)
                                 CCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          >  SRR4302542.1236476/1‑94 (MQ=60)
                                 CCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGA                                                          <  SRR4302542.5886373/94‑1 (MQ=60)
                                  CGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         <  SRR4302542.1963763/94‑1 (MQ=60)
                                  CGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         >  SRR4302542.519191/1‑94 (MQ=60)
                                  CGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         <  SRR4302542.6361943/94‑1 (MQ=60)
                                   GAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATA                                                        <  SRR4302542.5653687/94‑1 (MQ=60)
                                    AGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAA                                                       <  SRR4302542.4715217/94‑1 (MQ=60)
                                    AGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAA                                                       >  SRR4302542.4772435/1‑94 (MQ=60)
                                    AGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAA                                                       >  SRR4302542.4772436/1‑94 (MQ=60)
                                    AGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAA                                                       >  SRR4302542.1206996/1‑94 (MQ=60)
                                      GAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTAACCGCCCAGATAAAC                                                     >  SRR4302542.5260539/1‑94 (MQ=60)
                                        AAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   >  SRR4302542.2136337/1‑94 (MQ=60)
                                        AAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302542.2575963/94‑1 (MQ=60)
                                        AAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   >  SRR4302542.3059561/1‑94 (MQ=60)
                                        AAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302542.826394/94‑1 (MQ=60)
                                        AAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302542.5280464/94‑1 (MQ=60)
                                        AAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGGTTCCCGCATATGGTGATTGTTGACCGCCCAGATAAAAAG                                                   >  SRR4302542.1605970/1‑94 (MQ=60)
                                         AATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGT                                                  <  SRR4302542.1692987/94‑1 (MQ=60)
                                         AATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGT                                                  <  SRR4302542.6460872/94‑1 (MQ=60)
                                         AATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGT                                                  <  SRR4302542.6488146/94‑1 (MQ=60)
                                          ATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302542.5418933/94‑1 (MQ=60)
                                          ATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302542.5438265/94‑1 (MQ=60)
                                          ATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 >  SRR4302542.3496615/1‑94 (MQ=60)
                                          ATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 >  SRR4302542.3257348/1‑94 (MQ=60)
                                          ATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302542.6813086/94‑1 (MQ=60)
                                           TCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAG                                                <  SRR4302542.4390028/94‑1 (MQ=60)
                                           TCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAG                                                <  SRR4302542.4268773/94‑1 (MQ=60)
                                            CAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGC                                               >  SRR4302542.3109626/1‑94 (MQ=60)
                                             AT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCC                                              <  SRR4302542.6786580/94‑1 (MQ=60)
                                                 CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           >  SRR4302542.873366/1‑94 (MQ=60)
                                                 CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           <  SRR4302542.4000407/94‑1 (MQ=60)
                                                 CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           <  SRR4302542.391937/94‑1 (MQ=60)
                                                 CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           <  SRR4302542.2138546/94‑1 (MQ=60)
                                                 CCCAGCACAATGTTCACCAGCGGGTCAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           >  SRR4302542.5038184/1‑94 (MQ=60)
                                                  CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAataaccaggt                                          >  SRR4302542.2377929/1‑84 (MQ=60)
                                                  CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          >  SRR4302542.5912234/1‑94 (MQ=60)
                                                  CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302542.7200721/94‑1 (MQ=60)
                                                  CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCCCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGAAGCCAGTT                                          >  SRR4302542.5799118/1‑94 (MQ=60)
                                                   CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         >  SRR4302542.1464392/1‑94 (MQ=60)
                                                   CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         <  SRR4302542.6512495/94‑1 (MQ=60)
                                                   CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         <  SRR4302542.6397601/94‑1 (MQ=60)
                                                    AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGC                                        <  SRR4302542.2232432/94‑1 (MQ=60)
                                                    AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATCGTTCACCGCCCAGATAAACAGTAGCCAGTTGC                                        <  SRR4302542.441968/94‑1 (MQ=60)
                                                     GCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCC                                       >  SRR4302542.6694884/1‑94 (MQ=60)
                                                      CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      >  SRR4302542.882156/1‑94 (MQ=60)
                                                      CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      >  SRR4302542.949880/1‑94 (MQ=60)
                                                      CACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      >  SRR4302542.5111157/1‑94 (MQ=60)
                                                       ACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCAC                                     >  SRR4302542.1538817/1‑94 (MQ=60)
                                                       ACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCAC                                     >  SRR4302542.6807167/1‑94 (MQ=60)
                                                        CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302542.3334429/1‑94 (MQ=60)
                                                        CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302542.805910/1‑94 (MQ=60)
                                                        CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302542.4807386/1‑94 (MQ=60)
                                                        CAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302542.289579/1‑94 (MQ=60)
                                                         AATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCA                                   >  SRR4302542.7218795/1‑94 (MQ=60)
                                                         AATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCA                                   <  SRR4302542.5588558/94‑1 (MQ=60)
                                                         AATGTTCACCAGCGGGTCAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCA                                   <  SRR4302542.4234124/94‑1 (MQ=60)
                                                          ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAA                                  >  SRR4302542.2888286/1‑94 (MQ=60)
                                                          ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAA                                  >  SRR4302542.5891398/1‑94 (MQ=60)
                                                          ATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAA                                  <  SRR4302542.5598743/94‑1 (MQ=60)
                                                           TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAT                                 <  SRR4302542.2153165/94‑1 (MQ=60)
                                                            GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                >  SRR4302542.6673799/1‑94 (MQ=60)
                                                            GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                <  SRR4302542.942225/94‑1 (MQ=60)
                                                            GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                <  SRR4302542.7420041/94‑1 (MQ=60)
                                                             TTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCA                               >  SRR4302542.6657058/1‑94 (MQ=60)
                                                              TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAG                              >  SRR4302542.3621249/1‑94 (MQ=60)
                                                              TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAG                              <  SRR4302542.441318/94‑1 (MQ=60)
                                                              TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAG                              >  SRR4302542.7404277/1‑94 (MQ=60)
                                                              TCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAG                              >  SRR4302542.494153/1‑94 (MQ=60)
                                                               CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             <  SRR4302542.7369162/94‑1 (MQ=60)
                                                               CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302542.7340613/1‑94 (MQ=60)
                                                               CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             <  SRR4302542.2732798/94‑1 (MQ=60)
                                                               CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCAAGTTGCCACCAATCAGC                             >  SRR4302542.4470063/1‑94 (MQ=60)
                                                                ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            >  SRR4302542.7069608/1‑94 (MQ=60)
                                                                ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            >  SRR4302542.1310792/1‑94 (MQ=60)
                                                                ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            <  SRR4302542.4645439/94‑1 (MQ=60)
                                                                ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            >  SRR4302542.6488482/1‑94 (MQ=60)
                                                                 CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302542.678892/94‑1 (MQ=60)
                                                                 CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302542.3515399/94‑1 (MQ=60)
                                                                 CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           >  SRR4302542.244106/1‑94 (MQ=60)
                                                                  CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          <  SRR4302542.7181342/94‑1 (MQ=60)
                                                                  CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          >  SRR4302542.1147149/1‑94 (MQ=60)
                                                                  CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          <  SRR4302542.3185505/94‑1 (MQ=60)
                                                                  CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTAGCCACCAATCAGCACG                          >  SRR4302542.722574/1‑94 (MQ=60)
                                                                  CAGCGGGTTAATAAAGAAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACAAATCAGCACG                          >  SRR4302542.7084174/1‑94 (MQ=60)
                                                                    GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC                        >  SRR4302542.319831/1‑94 (MQ=60)
                                                                    GCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGC                        <  SRR4302542.6142854/94‑1 (MQ=60)
                                                                     CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302542.2014219/94‑1 (MQ=60)
                                                                     CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302542.663007/94‑1 (MQ=60)
                                                                     CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       >  SRR4302542.1530365/1‑94 (MQ=60)
                                                                     CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       >  SRR4302542.4860818/1‑94 (MQ=60)
                                                                      GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302542.3098778/1‑94 (MQ=60)
                                                                      GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      <  SRR4302542.2381991/94‑1 (MQ=60)
                                                                       GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA                     >  SRR4302542.1305007/1‑94 (MQ=60)
                                                                       GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA                     <  SRR4302542.4608342/94‑1 (MQ=60)
                                                                        GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302542.7592062/94‑1 (MQ=60)
                                                                        GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302542.5827481/94‑1 (MQ=60)
                                                                        GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    >  SRR4302542.6831903/1‑94 (MQ=60)
                                                                        GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302542.5937659/94‑1 (MQ=60)
                                                                         TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA                   <  SRR4302542.6032809/94‑1 (MQ=60)
                                                                          TAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  <  SRR4302542.5996492/94‑1 (MQ=60)
                                                                          TAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  >  SRR4302542.1365365/1‑94 (MQ=60)
                                                                          TAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  <  SRR4302542.6328373/94‑1 (MQ=60)
                                                                           AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 >  SRR4302542.1071636/1‑94 (MQ=60)
                                                                           AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302542.7094317/94‑1 (MQ=60)
                                                                           AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 >  SRR4302542.5482794/1‑94 (MQ=60)
                                                                           AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302542.3263112/94‑1 (MQ=60)
                                                                           AATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302542.4337022/94‑1 (MQ=60)
                                                                            ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                >  SRR4302542.3787376/1‑94 (MQ=60)
                                                                            ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                >  SRR4302542.3793383/1‑94 (MQ=60)
                                                                            ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                >  SRR4302542.4183991/1‑94 (MQ=60)
                                                                              AAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCC              >  SRR4302542.4849749/1‑94 (MQ=60)
                                                                               AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA             <  SRR4302542.7459790/94‑1 (MQ=60)
                                                                               AAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA             >  SRR4302542.4425000/1‑94 (MQ=60)
                                                                                AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            >  SRR4302542.3322050/1‑94 (MQ=60)
                                                                                AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302542.6816786/94‑1 (MQ=60)
                                                                                AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302542.5167309/94‑1 (MQ=60)
                                                                                AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302542.5367174/94‑1 (MQ=60)
                                                                                 GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC           >  SRR4302542.3317360/1‑94 (MQ=60)
                                                                                 GCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC           <  SRR4302542.1106113/94‑1 (MQ=60)
                                                                                  TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          <  SRR4302542.572522/94‑1 (MQ=60)
                                                                                   AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCACAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         >  SRR4302542.6270785/1‑94 (MQ=60)
                                                                                    ACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATA        >  SRR4302542.2055140/1‑94 (MQ=60)
                                                                                     CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA       <  SRR4302542.3988348/94‑1 (MQ=60)
                                                                                     CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA       >  SRR4302542.2975797/1‑94 (MQ=60)
                                                                                     CCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAA       <  SRR4302542.1883828/94‑1 (MQ=60)
                                                                                      CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA      <  SRR4302542.3942551/94‑1 (MQ=60)
                                                                                        AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302542.1481000/1‑94 (MQ=60)
                                                                                         GGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT   >  SRR4302542.6843749/1‑94 (MQ=60)
                                                                                          GCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  <  SRR4302542.4133807/94‑1 (MQ=60)
                                                                                              |                                                                                         
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCAT‑CCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  NC_000913/4001393‑4001575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑