Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,039,960 Δ1 bp intergenic (+42/‑36) yihD → / → yihE hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,039,9590A.100.0% 1508.3 / NA 325intergenic (+41/‑37)yihD/yihEhypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (150/175);  total (150/175)

Only 100 of 347 total aligned reads displayed.

AGAAGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGG  >  NC_000913/4039867‑4040047
                                                                                            |                                                                                        
 gaagaCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATat                                                                                         <  2:6860612/93‑2 (MQ=255)
 gaagaCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATat                                                                                         >  2:2105499/1‑92 (MQ=255)
  aagaCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatc                                                                                        <  2:1299972/93‑3 (MQ=255)
  aagaCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatc                                                                                        <  2:2903884/93‑3 (MQ=255)
   agaCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatcc                                                                                       <  1:4687199/93‑4 (MQ=255)
   agaCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatcc                                                                                       >  1:6911225/1‑90 (MQ=255)
     aCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCtt                                                                                    <  1:1599537/93‑1 (MQ=255)
     aCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCtt                                                                                    <  2:3850028/93‑1 (MQ=255)
     aCTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCtt                                                                                    >  2:3083193/1‑93 (MQ=255)
      cTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTc                                                                                   <  1:2872129/93‑1 (MQ=255)
          aaaaCGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCa                                                                               <  1:1758387/93‑1 (MQ=255)
          aaaaCGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCa                                                                               <  2:6386241/93‑1 (MQ=255)
          aaaaCGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCa                                                                               <  1:3393707/93‑1 (MQ=255)
            aaCGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAtt                                                                             >  1:4893553/1‑93 (MQ=255)
            aaCGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAtt                                                                             >  2:7007492/1‑93 (MQ=255)
              cGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCg                                                                           >  1:2695446/1‑93 (MQ=255)
                  gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAt                                                                       >  1:1124121/1‑93 (MQ=255)
                  gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAt                                                                       <  2:4127790/93‑1 (MQ=255)
                  gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAt                                                                       >  2:2641544/1‑93 (MQ=255)
                   cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTTTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATg                                                                      >  1:7215629/1‑93 (MQ=255)
                   cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATg                                                                      >  2:194761/1‑93 (MQ=255)
                   cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATg                                                                      >  1:4058785/1‑93 (MQ=255)
                   cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATg                                                                      >  2:3774792/1‑93 (MQ=255)
                       tACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGtttt                                                                  <  2:2334705/93‑1 (MQ=255)
                        nngcgcTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTc                                                                 <  1:3492867/91‑1 (MQ=255)
                        aCGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTc                                                                 <  1:968428/93‑1 (MQ=255)
                        aCGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTc                                                                 <  1:5211560/93‑1 (MQ=255)
                         cgcgCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTcc                                                                <  2:592871/93‑1 (MQ=255)
                         cgcgCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTcc                                                                <  1:5810567/93‑1 (MQ=255)
                          gcgcTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCg                                                               <  1:2596426/93‑1 (MQ=255)
                            gcTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGga                                                             <  2:5018080/93‑1 (MQ=255)
                            gcTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGga                                                             <  2:4710968/93‑1 (MQ=255)
                              tCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatg                                                           >  2:842420/1‑93 (MQ=255)
                                gcggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatgat                                                         <  2:555562/93‑1 (MQ=255)
                                gcggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatgat                                                         <  1:215074/93‑1 (MQ=255)
                                gcggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatgat                                                         <  1:3336392/93‑1 (MQ=255)
                                 cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGatgatg                                                        <  1:5990240/93‑1 (MQ=255)
                                 cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGatgatg                                                        <  1:7069471/93‑1 (MQ=255)
                                  ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATgg                                                       <  2:6727172/93‑1 (MQ=255)
                                  ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATgg                                                       <  1:2559903/93‑1 (MQ=255)
                                  ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATgg                                                       <  1:3774115/93‑1 (MQ=255)
                                  ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATgg                                                       >  1:7351624/1‑93 (MQ=255)
                                   gcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATggg                                                      <  1:6707531/93‑1 (MQ=255)
                                    cgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGa                                                     <  2:4202790/93‑1 (MQ=255)
                                    cgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGa                                                     <  1:3053329/93‑1 (MQ=255)
                                     gTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAt                                                    <  2:1461739/93‑1 (MQ=255)
                                      tAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATg                                                   <  1:5298305/93‑1 (MQ=255)
                                      tAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATg                                                   >  1:1208511/1‑93 (MQ=255)
                                       aaTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGa                                                  >  1:6158896/1‑93 (MQ=255)
                                        aTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGaa                                                 >  2:320074/1‑93 (MQ=255)
                                         ttAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAAt                                                <  1:5611180/93‑1 (MQ=255)
                                            aaGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAAc                                             <  1:2246407/93‑1 (MQ=255)
                                             agagTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACa                                            <  1:73969/93‑1 (MQ=255)
                                             agagTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACa                                            <  2:1156110/93‑1 (MQ=255)
                                             agagTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACa                                            >  2:2168957/1‑93 (MQ=255)
                                               agTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgc                                          <  1:4258905/93‑1 (MQ=255)
                                                gTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgcg                                         >  2:1823224/1‑93 (MQ=255)
                                                gTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgcg                                         >  1:2409214/1‑93 (MQ=255)
                                                  aaaaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCt                                       >  1:650437/1‑93 (MQ=255)
                                                   aaaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCtt                                      >  2:5248287/1‑93 (MQ=255)
                                                    aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGNttt                                     >  1:6064825/1‑93 (MQ=255)
                                                    aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                                     >  2:4676250/1‑93 (MQ=255)
                                                    aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                                     <  2:4916108/93‑1 (MQ=255)
                                                    aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                                     >  1:5682485/1‑93 (MQ=255)
                                                    aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                                     <  1:7485107/93‑1 (MQ=255)
                                                      gCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTa                                   >  1:3166429/1‑93 (MQ=255)
                                                       cTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTAc                                  <  2:5225907/93‑1 (MQ=255)
                                                        ttGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACt                                 <  2:743058/93‑1 (MQ=255)
                                                         tGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACtt                                >  1:3888725/1‑93 (MQ=255)
                                                         tGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACtt                                <  1:3617488/93‑1 (MQ=255)
                                                           tAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTc                              >  2:3364043/1‑93 (MQ=255)
                                                            aaGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTcc                             >  2:3550166/1‑93 (MQ=255)
                                                            aaGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTcc                             >  1:3206935/1‑93 (MQ=255)
                                                             aGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCa                            <  2:2434718/93‑1 (MQ=255)
                                                             aGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCa                            >  2:6156417/1‑93 (MQ=255)
                                                             aGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCa                            <  1:4449060/93‑1 (MQ=255)
                                                               cggcgCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGa                          <  1:1820269/93‑1 (MQ=255)
                                                                 gcgcCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGaca                        <  2:2254967/93‑1 (MQ=255)
                                                                 gcgcCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGaca                        <  1:1996541/93‑1 (MQ=255)
                                                                     caccaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTac                    >  2:1719212/1‑93 (MQ=255)
                                                                     caccaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTac                    <  2:4453521/93‑1 (MQ=255)
                                                                      accaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTaca                   >  1:4320366/1‑93 (MQ=255)
                                                                      accaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTaca                   >  2:3601334/1‑93 (MQ=255)
                                                                        caAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACAcc                 >  1:153524/1‑93 (MQ=255)
                                                                        caAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACAcc                 >  2:6548672/1‑93 (MQ=255)
                                                                         aaaaTCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACAccc                >  1:5426190/1‑93 (MQ=255)
                                                                          aaaTCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCg               >  1:1063208/1‑93 (MQ=255)
                                                                          aaaTCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCg               <  2:3468592/93‑1 (MQ=255)
                                                                           aaTCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCgg              >  1:593808/1‑93 (MQ=255)
                                                                            atcatcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGa             >  1:6761437/1‑93 (MQ=255)
                                                                            atcatcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGa             <  2:7327496/93‑1 (MQ=255)
                                                                             tcatcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGAt            <  2:5954331/93‑1 (MQ=255)
                                                                              catcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATa           <  1:1949474/93‑1 (MQ=255)
                                                                              catcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATa           <  2:5168955/93‑1 (MQ=255)
                                                                              catcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATa           <  1:2104042/93‑1 (MQ=255)
                                                                                  gTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACcat       <  2:7216696/93‑1 (MQ=255)
                                                                                  gTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACcat       >  2:1353655/1‑93 (MQ=255)
                                                                                    gAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACcatca     <  1:3978378/93‑1 (MQ=255)
                                                                                    gAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACcatca     <  2:5403383/93‑1 (MQ=255)
                                                                                    gAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACcatca     <  2:4248318/93‑1 (MQ=255)
                                                                                            |                                                                                        
AGAAGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGG  >  NC_000913/4039867‑4040047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGAAGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTC  >  NC_000913/4039867‑4040053
                                                                                             |                                                                                             
AGAAGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAT                                                                                               >  SRR4302542.430693/1‑94 (MQ=60)
  AAGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCC                                                                                            >  SRR4302542.6979075/1‑94 (MQ=60)
   AGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCT                                                                                           <  SRR4302542.86600/94‑1 (MQ=60)
   AGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCT                                                                                           <  SRR4302542.2140186/94‑1 (MQ=60)
   AGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCT                                                                                           >  SRR4302542.3680343/1‑94 (MQ=60)
   AGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCT                                                                                           <  SRR4302542.4732975/94‑1 (MQ=60)
   AGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCT                                                                                           <  SRR4302542.6119151/94‑1 (MQ=60)
    GACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTT                                                                                          <  SRR4302542.3245125/94‑1 (MQ=60)
     ACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTC                                                                                         <  SRR4302542.5938752/94‑1 (MQ=60)
     ACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTC                                                                                         >  SRR4302542.6243667/1‑94 (MQ=60)
     ACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTC                                                                                         >  SRR4302542.5433972/1‑94 (MQ=60)
     ACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTC                                                                                         <  SRR4302542.1613353/94‑1 (MQ=60)
     ACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTC                                                                                         >  SRR4302542.3513433/1‑94 (MQ=60)
     ACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTC                                                                                         <  SRR4302542.3966583/94‑1 (MQ=60)
      CTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCTTCGTGAAATGAT‑ATCCTTCG                                                                                        >  SRR4302542.1114612/1‑94 (MQ=60)
      CTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCG                                                                                        >  SRR4302542.5412633/1‑94 (MQ=60)
      CTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCG                                                                                        <  SRR4302542.2899715/94‑1 (MQ=60)
      CTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCG                                                                                        <  SRR4302542.3405504/94‑1 (MQ=60)
       TTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGT                                                                                       >  SRR4302542.2419581/1‑94 (MQ=60)
       TTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGT                                                                                       >  SRR4302542.2610362/1‑94 (MQ=60)
       TTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGT                                                                                       >  SRR4302542.2750353/1‑94 (MQ=60)
       TTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGT                                                                                       <  SRR4302542.383647/94‑1 (MQ=60)
         CAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCA                                                                                     <  SRR4302542.5616028/94‑1 (MQ=60)
         CAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCA                                                                                     <  SRR4302542.2102861/94‑1 (MQ=60)
          AAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAT                                                                                    <  SRR4302542.1773646/94‑1 (MQ=60)
          AAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAT                                                                                    <  SRR4302542.3425550/94‑1 (MQ=60)
          AAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAT                                                                                    >  SRR4302542.6789753/1‑94 (MQ=60)
          AAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAT                                                                                    >  SRR4302542.3316395/1‑94 (MQ=60)
          AAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAT                                                                                    >  SRR4302542.5684825/1‑94 (MQ=60)
           AAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATT                                                                                   <  SRR4302542.3547853/94‑1 (MQ=60)
           AAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATT                                                                                   >  SRR4302542.4941134/1‑94 (MQ=60)
            AACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTC                                                                                  >  SRR4302542.736471/1‑94 (MQ=60)
             ACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCG                                                                                 >  SRR4302542.2721436/1‑94 (MQ=60)
             ACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCG                                                                                 <  SRR4302542.1474713/94‑1 (MQ=60)
             ACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCG                                                                                 <  SRR4302542.2433107/94‑1 (MQ=60)
              CGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGT                                                                                <  SRR4302542.4814953/94‑1 (MQ=60)
               GGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTA                                                                               >  SRR4302542.1075327/1‑94 (MQ=60)
                GCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAA                                                                              <  SRR4302542.3233620/94‑1 (MQ=60)
                GCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAA                                                                              >  SRR4302542.620357/1‑94 (MQ=60)
                 CGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAT                                                                             >  SRR4302542.5363850/1‑94 (MQ=60)
                 CGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAT                                                                             <  SRR4302542.4291872/94‑1 (MQ=60)
                 CGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAT                                                                             >  SRR4302542.1133723/1‑94 (MQ=60)
                  GCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTTTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATG                                                                            >  SRR4302542.7286424/1‑94 (MQ=60)
                  GCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATG                                                                            >  SRR4302542.662641/1‑94 (MQ=60)
                  GCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATG                                                                            >  SRR4302542.4098812/1‑94 (MQ=60)
                   CTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGT                                                                           >  SRR4302542.6950027/1‑94 (MQ=60)
                   CTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGT                                                                           >  SRR4302542.2210343/1‑94 (MQ=60)
                   CTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGT                                                                           >  SRR4302542.373460/1‑94 (MQ=60)
                        NNGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCC                                                                      <  SRR4302542.3525528/94‑1 (MQ=60)
                        ACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCC                                                                      <  SRR4302542.976747/94‑1 (MQ=60)
                        ACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCC                                                                      <  SRR4302542.5262245/94‑1 (MQ=60)
                         CGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCG                                                                     <  SRR4302542.5866952/94‑1 (MQ=60)
                          GCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGG                                                                    >  SRR4302542.4210363/1‑94 (MQ=60)
                          GCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGG                                                                    <  SRR4302542.2621561/94‑1 (MQ=60)
                           CGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGA                                                                   >  SRR4302542.7321297/1‑94 (MQ=60)
                               CGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGAT                                                               <  SRR4302542.4051488/94‑1 (MQ=60)
                               CGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGAT                                                               <  SRR4302542.74237/94‑1 (MQ=60)
                               CGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGAT                                                               >  SRR4302542.2057598/1‑94 (MQ=60)
                                GCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATG                                                              <  SRR4302542.216925/94‑1 (MQ=60)
                                GCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATG                                                              <  SRR4302542.3367795/94‑1 (MQ=60)
                                 CGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGG                                                             <  SRR4302542.6048264/94‑1 (MQ=60)
                                 CGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGG                                                             >  SRR4302542.7550616/1‑94 (MQ=60)
                                 CGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGG                                                             >  SRR4302542.7423617/1‑94 (MQ=60)
                                 CGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGG                                                             >  SRR4302542.2550139/1‑94 (MQ=60)
                                 CGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGG                                                             >  SRR4302542.3535844/1‑94 (MQ=60)
                                 CGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGG                                                             <  SRR4302542.7138858/94‑1 (MQ=60)
                                  GGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGG                                                            <  SRR4302542.3811444/94‑1 (MQ=60)
                                  GGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGG                                                            <  SRR4302542.2584714/94‑1 (MQ=60)
                                   GCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGA                                                           <  SRR4302542.1991467/94‑1 (MQ=60)
                                   GCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGA                                                           <  SRR4302542.6773606/94‑1 (MQ=60)
                                   GCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGA                                                           <  SRR4302542.5706368/94‑1 (MQ=60)
                                    CGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAT                                                          <  SRR4302542.676892/94‑1 (MQ=60)
                                    CGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAT                                                          >  SRR4302542.1934179/1‑94 (MQ=60)
                                    CGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAT                                                          >  SRR4302542.6219918/1‑94 (MQ=60)
                                    CGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAT                                                          >  SRR4302542.2120523/1‑94 (MQ=60)
                                    CGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAT                                                          <  SRR4302542.6072117/94‑1 (MQ=60)
                                    CGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAT                                                          <  SRR4302542.3082464/94‑1 (MQ=60)
                                     GTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATG                                                         >  SRR4302542.5987629/1‑94 (MQ=60)
                                     GTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATG                                                         >  SRR4302542.3264964/1‑94 (MQ=60)
                                     GTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATG                                                         >  SRR4302542.1218897/1‑94 (MQ=60)
                                      TAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGA                                                        >  SRR4302542.6218553/1‑94 (MQ=60)
                                      TAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGA                                                        <  SRR4302542.5349789/94‑1 (MQ=60)
                                       AATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAA                                                       >  SRR4302542.16897/1‑94 (MQ=60)
                                        ATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAAT                                                      <  SRR4302542.4394788/94‑1 (MQ=60)
                                        ATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAAT                                                      <  SRR4302542.685909/94‑1 (MQ=60)
                                        ATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAAT                                                      <  SRR4302542.1801851/94‑1 (MQ=60)
                                         TTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATA                                                     <  SRR4302542.5665698/94‑1 (MQ=60)
                                         TTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATA                                                     >  SRR4302542.3208500/1‑94 (MQ=60)
                                         TTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATA                                                     >  SRR4302542.3522632/1‑94 (MQ=60)
                                           AAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAAC                                                   >  SRR4302542.4403243/1‑94 (MQ=60)
                                           AAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAAC                                                   >  SRR4302542.2634569/1‑94 (MQ=60)
                                            AAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACA                                                  <  SRR4302542.7305317/94‑1 (MQ=60)
                                            AAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACA                                                  <  SRR4302542.4064593/94‑1 (MQ=60)
                                            AAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACA                                                  <  SRR4302542.2265727/94‑1 (MQ=60)
                                            AAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACA                                                  <  SRR4302542.3876845/94‑1 (MQ=60)
                                            AAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACA                                                  <  SRR4302542.4787736/94‑1 (MQ=60)
                                             AGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAG                                                 >  SRR4302542.6301356/1‑94 (MQ=60)
                                             AGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAG                                                 >  SRR4302542.1367790/1‑94 (MQ=60)
                                             AGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAG                                                 <  SRR4302542.6150951/94‑1 (MQ=60)
                                             AGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAG                                                 <  SRR4302542.74579/94‑1 (MQ=60)
                                               AGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCG                                               >  SRR4302542.2432647/1‑94 (MQ=60)
                                               AGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCG                                               >  SRR4302542.4489071/1‑94 (MQ=60)
                                               AGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCG                                               <  SRR4302542.4300841/94‑1 (MQ=60)
                                                 TAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCT                                             >  SRR4302542.656019/1‑94 (MQ=60)
                                                 TAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCT                                             >  SRR4302542.2149426/1‑94 (MQ=60)
                                                 TAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCT                                             >  SRR4302542.2675080/1‑94 (MQ=60)
                                                 TAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCT                                             >  SRR4302542.5751550/1‑94 (MQ=60)
                                                 TAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCT                                             >  SRR4302542.2549386/1‑94 (MQ=60)
                                                 TAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCT                                             >  SRR4302542.7071949/1‑94 (MQ=60)
                                                   AAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGNTTT                                           >  SRR4302542.6123570/1‑94 (MQ=60)
                                                   AAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTT                                           >  SRR4302542.2934463/1‑94 (MQ=60)
                                                   AAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTT                                           >  SRR4302542.5737662/1‑94 (MQ=60)
                                                   AAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTT                                           >  SRR4302542.199991/1‑94 (MQ=60)
                                                   AAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTT                                           <  SRR4302542.3712895/94‑1 (MQ=60)
                                                    AAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTT                                          <  SRR4302542.7558495/94‑1 (MQ=60)
                                                     AGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTA                                         >  SRR4302542.3196468/1‑94 (MQ=60)
                                                      GCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTAC                                        >  SRR4302542.1926330/1‑94 (MQ=60)
                                                      GCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTAC                                        <  SRR4302542.7430413/94‑1 (MQ=60)
                                                       CTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACT                                       >  SRR4302542.3183222/1‑94 (MQ=60)
                                                       CTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACT                                       >  SRR4302542.2238951/1‑94 (MQ=60)
                                                        TTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTT                                      <  SRR4302542.3106973/94‑1 (MQ=60)
                                                        TTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTT                                      >  SRR4302542.3927116/1‑94 (MQ=60)
                                                         TGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTT                                     <  SRR4302542.3651192/94‑1 (MQ=60)
                                                         TGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTT                                     <  SRR4302542.1713950/94‑1 (MQ=60)
                                                         TGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTT                                     <  SRR4302542.860016/94‑1 (MQ=60)
                                                         TGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTT                                     <  SRR4302542.2630936/94‑1 (MQ=60)
                                                          GTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTC                                    >  SRR4302542.7536015/1‑94 (MQ=60)
                                                           TAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCC                                   >  SRR4302542.3237313/1‑94 (MQ=60)
                                                           TAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCC                                   <  SRR4302542.6786314/94‑1 (MQ=60)
                                                           TAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCC                                   >  SRR4302542.1556271/1‑94 (MQ=60)
                                                            AAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCA                                  <  SRR4302542.6030847/94‑1 (MQ=60)
                                                            AAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCA                                  >  SRR4302542.261533/1‑94 (MQ=60)
                                                            AAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCA                                  >  SRR4302542.5480370/1‑94 (MQ=60)
                                                             AGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAG                                 <  SRR4302542.4492698/94‑1 (MQ=60)
                                                               CGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGAC                               <  SRR4302542.1836030/94‑1 (MQ=60)
                                                                GGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACA                              >  SRR4302542.4332310/1‑94 (MQ=60)
                                                                 GCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACAC                             <  SRR4302542.2013766/94‑1 (MQ=60)
                                                                 GCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACAC                             <  SRR4302542.3445649/94‑1 (MQ=60)
                                                                  CGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACT                            >  SRR4302542.5839122/1‑94 (MQ=60)
                                                                  CGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACT                            <  SRR4302542.4166282/94‑1 (MQ=60)
                                                                  CGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACT                            <  SRR4302542.2188532/94‑1 (MQ=60)
                                                                   GCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTA                           <  SRR4302542.1676253/94‑1 (MQ=60)
                                                                   GCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTA                           <  SRR4302542.4494144/94‑1 (MQ=60)
                                                                    CCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTAC                          >  SRR4302542.1209365/1‑94 (MQ=60)
                                                                    CCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTAC                          >  SRR4302542.1594125/1‑94 (MQ=60)
                                                                    CCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTAC                          <  SRR4302542.3424305/94‑1 (MQ=60)
                                                                     CACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACA                         <  SRR4302542.1299194/94‑1 (MQ=60)
                                                                     CACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACA                         <  SRR4302542.3100293/94‑1 (MQ=60)
                                                                     CACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACA                         >  SRR4302542.4362842/1‑94 (MQ=60)
                                                                      ACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACAC                        <  SRR4302542.5868326/94‑1 (MQ=60)
                                                                      ACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACAC                        <  SRR4302542.902709/94‑1 (MQ=60)
                                                                      ACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACAC                        >  SRR4302542.1138131/1‑94 (MQ=60)
                                                                       CCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACC                       >  SRR4302542.154825/1‑94 (MQ=60)
                                                                       CCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACC                       >  SRR4302542.2724375/1‑94 (MQ=60)
                                                                       CCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACC                       <  SRR4302542.530320/94‑1 (MQ=60)
                                                                       CCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACC                       >  SRR4302542.5117653/1‑94 (MQ=60)
                                                                        CAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCC                      <  SRR4302542.2941143/94‑1 (MQ=60)
                                                                        CAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCC                      >  SRR4302542.5478918/1‑94 (MQ=60)
                                                                        CAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCC                      <  SRR4302542.6068532/94‑1 (MQ=60)
                                                                        CAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCC                      <  SRR4302542.18753/94‑1 (MQ=60)
                                                                         AAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCG                     >  SRR4302542.1072346/1‑94 (MQ=60)
                                                                          AAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGG                    >  SRR4302542.598929/1‑94 (MQ=60)
                                                                          AAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGG                    >  SRR4302542.5709856/1‑94 (MQ=60)
                                                                           AATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGA                   >  SRR4302542.6827945/1‑94 (MQ=60)
                                                                            ATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGAT                  <  SRR4302542.4603761/94‑1 (MQ=60)
                                                                            ATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGAT                  <  SRR4302542.7001802/94‑1 (MQ=60)
                                                                            ATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGAT                  <  SRR4302542.3935037/94‑1 (MQ=60)
                                                                            ATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGAT                  <  SRR4302542.6594526/94‑1 (MQ=60)
                                                                            ATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGAT                  <  SRR4302542.4808867/94‑1 (MQ=60)
                                                                              CATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATAC                <  SRR4302542.1966336/94‑1 (MQ=60)
                                                                              CATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATAC                <  SRR4302542.2122201/94‑1 (MQ=60)
                                                                                 CGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCAT             <  SRR4302542.2388868/94‑1 (MQ=60)
                                                                                 CGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCAT             <  SRR4302542.4969028/94‑1 (MQ=60)
                                                                                 CGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCAT             >  SRR4302542.7083293/1‑94 (MQ=60)
                                                                                    GAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCAT          <  SRR4302542.4017632/94‑1 (MQ=60)
                                                                                     AAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATG         <  SRR4302542.1790918/94‑1 (MQ=60)
                                                                                     AAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATG         >  SRR4302542.601113/1‑94 (MQ=60)
                                                                                     AAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATG         <  SRR4302542.7226689/94‑1 (MQ=60)
                                                                                     AAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATG         >  SRR4302542.7255516/1‑94 (MQ=60)
                                                                                       ATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGA       >  SRR4302542.4511388/1‑94 (MQ=60)
                                                                                       ATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGA       <  SRR4302542.5326550/94‑1 (MQ=60)
                                                                                       ATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGA       <  SRR4302542.3963733/94‑1 (MQ=60)
                                                                                        TGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAC      >  SRR4302542.2257229/1‑94 (MQ=60)
                                                                                        TGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAC      <  SRR4302542.3358705/94‑1 (MQ=60)
                                                                                        TGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAC      <  SRR4302542.5572575/94‑1 (MQ=60)
                                                                                        TGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAC      >  SRR4302542.10998/1‑94 (MQ=60)
                                                                                        TGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGAC      <  SRR4302542.2729443/94‑1 (MQ=60)
                                                                                         GAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACG     <  SRR4302542.2160154/94‑1 (MQ=60)
                                                                                         GAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACG     <  SRR4302542.735469/94‑1 (MQ=60)
                                                                                         GAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACG     >  SRR4302542.1576539/1‑94 (MQ=60)
                                                                                           atATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGC    >  SRR4302542.7270063/3‑94 (MQ=60)
                                                                                           atATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGC    >  SRR4302542.2293243/3‑94 (MQ=60)
                                                                                           atATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGC    >  SRR4302542.4612179/3‑94 (MQ=60)
                                                                                           atATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGC    >  SRR4302542.4276874/3‑94 (MQ=60)
                                                                                           atATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGC    >  SRR4302542.4249778/3‑94 (MQ=60)
                                                                                             ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTC  >  SRR4302542.3902925/1‑94 (MQ=60)
                                                                                             ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTC  >  SRR4302542.2032325/1‑94 (MQ=60)
                                                                                             |                                                                                             
AGAAGACTTCAAAACGGCGCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACACCCGGATACCATCATGGACGCTC  >  NC_000913/4039867‑4040053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑