Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,051,170 |
+C |
intergenic (+172/+279) |
hemN → / ← glnG |
O2‑independent coproporphyrinogen III oxidase/GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,051,170 | 1 | . | C | 100.0%
| 761.2
/ NA
| 263 | intergenic (+172/+279) | hemN/glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (136/127); total (136/127) |
Only 100 of 274 total aligned reads displayed.
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA > NC_000913/4051077‑4051256
|
gggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgc < 2:1940212/93‑2 (MQ=255)
caacaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgctgg > 2:872663/1‑89 (MQ=255)
caacaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgctgg < 1:5134259/93‑5 (MQ=255)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcg > 2:5268639/1‑93 (MQ=25)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcg < 2:6844518/93‑1 (MQ=25)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcg > 1:1844368/1‑93 (MQ=21)
aaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGt < 1:1982698/93‑1 (MQ=25)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTc > 2:2458857/1‑93 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTc > 2:20119/1‑93 (MQ=21)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTc < 2:590089/93‑1 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCt < 2:942965/93‑1 (MQ=21)
cTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCtt < 2:4307198/93‑1 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTa < 1:6049922/93‑1 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTa < 2:1797891/93‑1 (MQ=21)
gTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAt > 2:6047267/1‑93 (MQ=21)
gTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAt > 2:6195699/1‑93 (MQ=21)
gTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTAt > 1:1407677/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc < 1:5378514/93‑1 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc > 1:3552940/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc < 2:5171678/93‑1 (MQ=18)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc > 2:5689778/1‑93 (MQ=21)
ttGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATc > 1:2308488/1‑93 (MQ=18)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCa < 2:3547376/93‑1 (MQ=21)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCa < 1:6908103/93‑1 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg > 1:3397392/1‑93 (MQ=18)
gAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAg > 1:6122778/1‑93 (MQ=18)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGcc < 2:821191/93‑1 (MQ=18)
tattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTa < 1:5885688/93‑1 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAc > 2:5497200/1‑93 (MQ=18)
attGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTAc < 2:6038309/93‑1 (MQ=18)
gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGAc < 2:7346909/93‑1 (MQ=18)
gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGAc > 2:6762736/1‑93 (MQ=18)
cTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACt < 1:5526888/93‑1 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 2:6963349/1‑93 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:7024302/1‑93 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:4302483/1‑93 (MQ=17)
ttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtc < 1:2127586/93‑1 (MQ=18)
ttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtc < 1:3167441/93‑1 (MQ=18)
tGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtct > 1:7446479/1‑93 (MQ=18)
tGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtct > 2:4519599/1‑93 (MQ=18)
tAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTcc > 1:7215294/1‑93 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGc > 1:4114947/1‑93 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa < 2:3845597/93‑1 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 1:3261524/1‑93 (MQ=18)
ccGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCAt < 2:2892437/93‑1 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc < 2:6490840/93‑1 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc < 1:100596/93‑1 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAACATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc > 1:1713089/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc > 1:633010/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc < 1:2255158/93‑1 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc > 2:4730165/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg < 1:5067911/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:5850938/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 1:2272947/1‑93 (MQ=18)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGc < 1:4382181/93‑1 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa > 2:4804271/1‑93 (MQ=21)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 1:6699864/93‑1 (MQ=18)
aaGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCa < 2:3158447/93‑1 (MQ=18)
ggCGTTTACGCCGCATCAGG‑AATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa > 1:3962197/1‑93 (MQ=21)
gCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATaa > 2:786338/1‑93 (MQ=21)
cGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATaaa < 2:2791158/93‑1 (MQ=21)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 2:6889937/93‑1 (MQ=25)
aCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACg > 1:15045/1‑93 (MQ=25)
aCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACg < 2:3062765/93‑1 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa < 2:1810052/93‑1 (MQ=25)
gccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAg < 2:1157420/93‑1 (MQ=25)
gccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAg > 1:7000131/1‑93 (MQ=37)
gccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAg > 2:5292086/1‑93 (MQ=37)
ccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc > 2:7129670/1‑93 (MQ=37)
ccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc > 1:298573/1‑93 (MQ=25)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:1493918/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:5364862/1‑93 (MQ=37)
cATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTc < 1:2967241/93‑1 (MQ=37)
aTCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCa > 2:2254972/1‑93 (MQ=37)
aTCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCa < 1:4639377/93‑1 (MQ=37)
caggcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGc < 2:2168777/89‑1 (MQ=37)
aggcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCt > 1:6425759/4‑93 (MQ=255)
gcATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTaa < 1:3028827/92‑1 (MQ=255)
cATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTaaa < 1:853436/93‑1 (MQ=255)
tCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACa > 1:989854/1‑93 (MQ=255)
tCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACa < 2:4117091/93‑1 (MQ=255)
tCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAACTTCAGCTAAACa > 2:3225990/1‑93 (MQ=255)
cTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAg > 2:3900281/1‑93 (MQ=255)
tGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGc > 2:7112302/1‑93 (MQ=255)
gAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGcc < 2:1587161/93‑1 (MQ=255)
aGCCTGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGccc < 2:4890373/93‑1 (MQ=255)
aGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGccc < 2:5806668/93‑1 (MQ=255)
gCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCa > 1:5718957/1‑93 (MQ=255)
tgatgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATc < 1:2831837/93‑1 (MQ=255)
tgatgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATc < 1:1888277/93‑1 (MQ=255)
tgatgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATc < 2:7302586/93‑1 (MQ=255)
gatgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCa > 2:1431521/1‑93 (MQ=255)
atgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAt < 1:3750952/93‑1 (MQ=255)
atgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAt < 1:1292430/93‑1 (MQ=255)
atgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAt < 1:1063727/93‑1 (MQ=255)
tgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAtt > 2:2594549/1‑93 (MQ=255)
tgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAtt > 1:2604467/1‑93 (MQ=255)
tgCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCAtt > 1:1342998/1‑93 (MQ=255)
gATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGc < 1:3670275/93‑1 (MQ=255)
gcggcgcTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGcaca > 2:130273/1‑93 (MQ=255)
|
TGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACAGCCCAATCATTGCGGCACA > NC_000913/4051077‑4051256
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGC‑GGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACAGCACG > NC_000913/4051079‑4051263
|
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGctg < SRR4302542.782861/94‑4 (MQ=60)
GCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGG > SRR4302542.3008789/1‑94 (MQ=60)
GCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGG < SRR4302542.2598696/94‑1 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGT < SRR4302542.5184167/94‑1 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGT < SRR4302542.4073353/94‑1 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGT > SRR4302542.2103365/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTC < SRR4302542.774906/94‑1 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCG < SRR4302542.6014702/94‑1 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCG > SRR4302542.1860326/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCG > SRR4302542.2285562/1‑94 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCG < SRR4302542.2781645/94‑1 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGT > SRR4302542.1891284/1‑94 (MQ=60)
AACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTC < SRR4302542.1999810/94‑1 (MQ=60)
AACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTC > SRR4302542.3325515/1‑94 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCT < SRR4302542.6145037/94‑1 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCT < SRR4302542.5339654/94‑1 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTT > SRR4302542.7273761/1‑94 (MQ=60)
CTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTA > SRR4302542.1929244/1‑94 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTAT > SRR4302542.1419848/1‑94 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTAT < SRR4302542.513804/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTAT < SRR4302542.6108478/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTAT > SRR4302542.2942389/1‑94 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATC > SRR4302542.3586145/1‑94 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATC < SRR4302542.3008079/94‑1 (MQ=60)
GTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATC > SRR4302542.2328311/1‑94 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCA < SRR4302542.5430771/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG > SRR4302542.3055883/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG > SRR4302542.2344877/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG > SRR4302542.6182020/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG < SRR4302542.1228036/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG > SRR4302542.3429262/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG < SRR4302542.6975922/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG < SRR4302542.5568472/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG < SRR4302542.3059516/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAG < SRR4302542.4021415/94‑1 (MQ=60)
GAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGG < SRR4302542.453140/94‑1 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGC > SRR4302542.7046655/1‑94 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGC > SRR4302542.3707887/1‑94 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCC < SRR4302542.4823715/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTAC < SRR4302542.3608604/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTAC < SRR4302542.5942730/94‑1 (MQ=60)
TATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTAC < SRR4302542.223329/94‑1 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302542.4344786/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTT < SRR4302542.5580608/94‑1 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302542.7093325/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCAGCA‑TTCATCTGAGCATTATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTGCGACTT > SRR4302542.1676330/1‑94 (MQ=39)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTT < SRR4302542.1829660/94‑1 (MQ=60)
TTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCT > SRR4302542.1039274/1‑94 (MQ=60)
TTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCT > SRR4302542.7519385/1‑94 (MQ=60)
TTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCT < SRR4302542.3197490/94‑1 (MQ=60)
TTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCT < SRR4302542.2145942/94‑1 (MQ=60)
TGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTC > SRR4302542.6865182/1‑94 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCC < SRR4302542.3827605/94‑1 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCC > SRR4302542.7286087/1‑94 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCC > SRR4302542.4499917/1‑94 (MQ=60)
TAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCG < SRR4302542.3270626/94‑1 (MQ=60)
TAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCCGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCG > SRR4302542.7085910/1‑94 (MQ=60)
AGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGC > SRR4302542.4155493/1‑94 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA > SRR4302542.3292327/1‑94 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA < SRR4302542.771876/94‑1 (MQ=60)
GCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCAT < SRR4302542.6736210/94‑1 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC > SRR4302542.6965103/1‑94 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAACATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC > SRR4302542.1727970/1‑94 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC > SRR4302542.638464/1‑94 (MQ=60)
CGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCC < SRR4302542.101439/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302542.360722/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG < SRR4302542.1305234/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302542.1909744/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG < SRR4302542.2274548/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302542.2292487/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGACCTACGAattttttttctttct > SRR4302542.7455683/1‑79 (MQ=60)
GATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG < SRR4302542.5117155/94‑1 (MQ=60)
TAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCA < SRR4302542.1427930/94‑1 (MQ=60)
TAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCA < SRR4302542.4425181/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302542.6765882/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302542.3491738/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT > SRR4302542.3491736/1‑94 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA < SRR4302542.4346300/94‑1 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑AATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302542.4001320/1‑94 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC > SRR4302542.1128621/1‑94 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302542.6998327/94‑1 (MQ=60)
TTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAA < SRR4302542.5501151/94‑1 (MQ=60)
TTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC > SRR4302542.5633958/1‑94 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302542.1358444/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG > SRR4302542.15175/1‑94 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG > SRR4302542.7449246/1‑94 (MQ=60)
ACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGA > SRR4302542.3300964/1‑94 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG > SRR4302542.7068896/1‑94 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG < SRR4302542.4316121/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG < SRR4302542.4779000/94‑1 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302542.607738/1‑94 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302542.301176/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302542.3022178/1‑94 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA > SRR4302542.3851501/1‑94 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA < SRR4302542.2995674/94‑1 (MQ=60)
CATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCA < SRR4302542.4395611/94‑1 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG < SRR4302542.6194256/94‑1 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG < SRR4302542.4684710/94‑1 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG < SRR4302542.652536/94‑1 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > SRR4302542.589119/1‑94 (MQ=60)
ATCAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGATCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > SRR4302542.1652774/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT < SRR4302542.2203449/94‑1 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302542.6489080/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT < SRR4302542.208696/94‑1 (MQ=60)
AGCCATGTGAGCGTGATGCCTGATGC‑GGCGCTGGTCGCCTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTA < SRR4302542.2746372/94‑1 (MQ=60)
GGCATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAA > SRR4302542.5736617/1‑94 (MQ=60)
GCATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA < SRR4302542.3057736/94‑1 (MQ=60)
CATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑C < SRR4302542.860788/94‑1 (MQ=60)
ATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CA > SRR4302542.998377/1‑94 (MQ=60)
ATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CA > SRR4302542.1739641/1‑94 (MQ=60)
ATCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CA > SRR4302542.2301579/1‑94 (MQ=60)
TCTGAGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAG > SRR4302542.7292422/1‑94 (MQ=60)
AGCATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCA > SRR4302542.5774468/1‑94 (MQ=60)
GCATGATGCCTGATGCGGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAACCAGCCC < SRR4302542.2390065/94‑1 (MQ=60)
CATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAAT > SRR4302542.1420092/1‑94 (MQ=60)
CATGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAAT > SRR4302542.7212941/1‑94 (MQ=60)
TGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCA < SRR4302542.1904622/94‑1 (MQ=60)
TGATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCA < SRR4302542.2859057/94‑1 (MQ=60)
GATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCAT < SRR4302542.2038787/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.1072872/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.6199818/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.1303562/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT > SRR4302542.1354554/1‑94 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT > SRR4302542.2299278/1‑94 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT > SRR4302542.2629653/1‑94 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.3189390/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.3788066/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.5360432/94‑1 (MQ=60)
ATGCCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATT < SRR4302542.6139201/94‑1 (MQ=60)
CCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCG > SRR4302542.987665/1‑94 (MQ=60)
CCTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCG > SRR4302542.6482114/1‑94 (MQ=60)
CTGATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGG < SRR4302542.1308221/94‑1 (MQ=60)
GATGC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCA < SRR4302542.3705548/94‑1 (MQ=60)
GC‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACAC > SRR4302542.7428415/1‑94 (MQ=60)
C‑GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACA < SRR4302542.1866460/94‑1 (MQ=60)
GGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACAG < SRR4302542.6579327/94‑1 (MQ=60)
C‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACAGCACG < SRR4302542.331972/94‑1 (MQ=60)
C‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACAGCACG < SRR4302542.4619077/94‑1 (MQ=60)
C‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACAGCACG < SRR4302542.995149/94‑1 (MQ=60)
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GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGC‑GGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAA‑CAGCCCAATCATTGCGGCACACAGCACG > NC_000913/4051079‑4051263
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
