Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,066,222 T→C Y212C (TAC→TGC)  yihQ ← putative glycosidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,066,2220TC81.9% 803.4 / 166.7 371Y212C (TAC→TGC) yihQputative glycosidase
Reads supporting (aligned to +/- strand):  ref base T (32/35);  new base C (154/150);  total (186/185)
Fisher's exact test for biased strand distribution p-value = 6.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 372 total aligned reads displayed.

GCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  >  NC_000913/4066130‑4066312
                                                                                            |                                                                                          
  agGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTAt                                                                                          >  2:3311801/1‑93 (MQ=255)
   gggCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAtt                                                                                         >  1:6891609/1‑93 (MQ=255)
   gggCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAtt                                                                                         >  2:3133261/1‑93 (MQ=255)
   gggCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAtt                                                                                         <  2:1005061/93‑1 (MQ=255)
    ggCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTc                                                                                        <  2:1204417/93‑1 (MQ=255)
     gCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTcc                                                                                       >  2:1252084/1‑93 (MQ=255)
      cGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCg                                                                                      >  2:6282034/1‑93 (MQ=255)
       ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCgg                                                                                     <  1:773273/93‑1 (MQ=255)
       ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCgg                                                                                     <  1:3546370/93‑1 (MQ=255)
       ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCgg                                                                                     >  1:2566639/1‑93 (MQ=255)
        gTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCggg                                                                                    >  2:2466406/1‑93 (MQ=255)
        gTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCggg                                                                                    <  1:5318575/93‑1 (MQ=255)
        gTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCggg                                                                                    >  1:1567003/1‑93 (MQ=255)
           aaTTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCa                                                                                 >  2:2712278/1‑93 (MQ=255)
             tttttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACt                                                                               <  2:2572258/93‑1 (MQ=255)
              ttttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTa                                                                              >  2:5678792/1‑93 (MQ=255)
                ttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTaaa                                                                            <  1:5682071/93‑1 (MQ=255)
                   cagcagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTc                                                                         >  2:2270069/1‑93 (MQ=255)
                    agcagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCg                                                                        >  1:3848510/1‑93 (MQ=255)
                     gcagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGa                                                                       >  2:1842146/1‑93 (MQ=255)
                      cagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGaa                                                                      <  1:549975/93‑1 (MQ=255)
                       agGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAg                                                                     >  1:1747900/1‑93 (MQ=255)
                          gAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTc                                                                  >  1:4167863/1‑93 (MQ=255)
                           aaaTGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCa                                                                 <  1:5856088/93‑1 (MQ=255)
                            aaTGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCat                                                                >  2:6494643/1‑93 (MQ=255)
                             atgtatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCata                                                               <  2:7272320/93‑1 (MQ=255)
                               gtatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCAtata                                                             <  2:5027869/93‑1 (MQ=255)
                                tatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAg                                                            <  1:7322696/93‑1 (MQ=255)
                                 atgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGc                                                           >  1:58080/1‑93 (MQ=255)
                                 atgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGACATTCCGGGGCACTAAAGTCGAAGTTCATATAGc                                                           <  1:4742583/93‑1 (MQ=255)
                                  tgtgTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCa                                                          >  2:6181506/1‑93 (MQ=255)
                                  tgtgTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCa                                                          <  1:1521320/93‑1 (MQ=255)
                                    tgtCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAAc                                                        <  1:4274415/93‑1 (MQ=255)
                                        aGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGtt                                                    >  1:7496154/1‑93 (MQ=255)
                                         gCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTa                                                   <  2:6640044/93‑1 (MQ=255)
                                         gCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTa                                                   >  1:949761/1‑93 (MQ=255)
                                         gCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTa                                                   >  2:423508/1‑93 (MQ=255)
                                         gCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTa                                                   >  1:2385512/1‑93 (MQ=255)
                                          cacaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTAt                                                  <  1:6949381/93‑1 (MQ=255)
                                          cacaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTAt                                                  <  1:4314780/93‑1 (MQ=255)
                                           acaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATc                                                 <  1:4955835/93‑1 (MQ=255)
                                            caTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCa                                                <  2:6017207/93‑1 (MQ=255)
                                             aTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCaa                                               >  1:7055683/1‑93 (MQ=255)
                                              ttCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAc                                              >  2:4342518/1‑93 (MQ=255)
                                               tCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACa                                             <  2:3077823/93‑1 (MQ=255)
                                                cAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACAt                                            <  1:5465221/93‑1 (MQ=255)
                                                 aaaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATg                                           <  2:3907507/93‑1 (MQ=255)
                                                 aaaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTAGAAGTTCATATAGCAACTGTTATCAACATg                                           <  1:6562055/93‑1 (MQ=255)
                                                  aaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATgg                                          <  2:4033658/93‑1 (MQ=255)
                                                   aaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGc                                         <  2:4453997/93‑1 (MQ=255)
                                                   aaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGc                                         <  2:6360765/93‑1 (MQ=255)
                                                    aCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCa                                        <  1:3311801/93‑1 (MQ=255)
                                                    aCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCa                                        <  1:1150087/93‑1 (MQ=255)
                                                    aCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCa                                        >  2:3731531/1‑93 (MQ=255)
                                                     cGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAg                                       >  2:342951/1‑93 (MQ=255)
                                                        aGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTaa                                    <  1:1243527/93‑1 (MQ=255)
                                                         gCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAt                                   >  1:6659799/1‑93 (MQ=255)
                                                         gCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAt                                   >  2:1385947/1‑93 (MQ=255)
                                                              gCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTc                              <  2:2764588/93‑1 (MQ=255)
                                                              gCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTc                              <  2:3848473/93‑1 (MQ=255)
                                                              gCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTc                              >  2:4672843/1‑93 (MQ=255)
                                                              gCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTc                              >  2:469592/1‑93 (MQ=255)
                                                              gCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTc                              >  1:2844253/1‑93 (MQ=255)
                                                               cTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCt                             <  2:5811302/93‑1 (MQ=255)
                                                                tttGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTg                            >  2:5901604/1‑93 (MQ=255)
                                                                tttGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTg                            >  1:2055100/1‑93 (MQ=255)
                                                                tttGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTg                            >  1:5938423/1‑93 (MQ=255)
                                                                tttGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTg                            <  1:4460285/93‑1 (MQ=255)
                                                                 ttGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGc                           >  1:2373772/1‑93 (MQ=255)
                                                                 ttGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGc                           <  1:1000273/93‑1 (MQ=255)
                                                                  tGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCg                          <  1:3824430/93‑1 (MQ=255)
                                                                   gTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGt                         <  1:1029060/93‑1 (MQ=255)
                                                                    tCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTg                        >  2:3685011/1‑93 (MQ=255)
                                                                    tCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTg                        >  2:528197/1‑93 (MQ=255)
                                                                     cTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGc                       >  2:892431/1‑93 (MQ=255)
                                                                      ttCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCt                      >  1:6790186/1‑93 (MQ=255)
                                                                      ttCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCt                      >  1:3991778/1‑93 (MQ=255)
                                                                        cccACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGa                    <  1:1900929/93‑1 (MQ=255)
                                                                        cccACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGa                    <  2:5792941/93‑1 (MQ=255)
                                                                         ccACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAc                   >  2:1068991/1‑93 (MQ=255)
                                                                         ccACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCCAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAc                   >  1:6213405/1‑93 (MQ=255)
                                                                          cacaGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACa                  >  1:1851032/1‑93 (MQ=255)
                                                                           acaGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACaa                 >  1:4675415/1‑93 (MQ=255)
                                                                           acaGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACaa                 <  2:7022218/93‑1 (MQ=255)
                                                                            caGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACaaa                <  2:5517339/93‑1 (MQ=255)
                                                                             aGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAAc               <  2:3610837/93‑1 (MQ=255)
                                                                               cgcCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGt             <  1:6408429/93‑1 (MQ=255)
                                                                                gcCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTa            >  2:4128925/1‑93 (MQ=255)
                                                                                gcCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTa            >  2:5157137/1‑93 (MQ=255)
                                                                                gcCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTa            >  2:1682570/1‑93 (MQ=255)
                                                                                gcCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTa            <  2:3560199/93‑1 (MQ=255)
                                                                                 ccAGTTCATGGCATTCCGGGGCACTAAAGTGGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAg           <  2:7434032/93‑1 (MQ=255)
                                                                                 ccAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAg           >  2:6918295/1‑93 (MQ=255)
                                                                                  cAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAgg          <  1:7231243/93‑1 (MQ=255)
                                                                                    gTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCt        <  1:362394/93‑1 (MQ=255)
                                                                                     ttCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCtg       >  1:3398914/1‑93 (MQ=255)
                                                                                      tCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCtgt      <  1:3105044/93‑1 (MQ=255)
                                                                                       cATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCtgtg     <  1:3042051/93‑1 (MQ=255)
                                                                                        aTGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTgg    <  1:295406/93‑1 (MQ=255)
                                                                                         tGGCATTCCGGGGCACTAAAGTCGAAGATCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTggg   >  2:6429520/1‑93 (MQ=255)
                                                                                            |                                                                                          
GCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  >  NC_000913/4066130‑4066312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  >  NC_000913/4066129‑4066312
                                                                                             |                                                                                          
AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGC                                                                                            >  SRR4302542.3389376/1‑94 (MQ=60)
AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGC                                                                                            >  SRR4302542.6515972/1‑94 (MQ=60)
AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGC                                                                                            >  SRR4302542.7229856/1‑94 (MQ=60)
 GCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCA                                                                                           <  SRR4302542.5579394/94‑1 (MQ=60)
 GCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCA                                                                                           <  SRR4302542.3363745/94‑1 (MQ=60)
 GCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCA                                                                                           <  SRR4302542.5680454/94‑1 (MQ=60)
  CAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAT                                                                                          >  SRR4302542.6984365/1‑94 (MQ=60)
   AGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATT                                                                                         >  SRR4302542.6959288/1‑94 (MQ=60)
    GGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTC                                                                                        >  SRR4302542.3029333/1‑94 (MQ=60)
    GGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTC                                                                                        >  SRR4302542.3656890/1‑94 (MQ=60)
     GGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCC                                                                                       <  SRR4302542.2844922/94‑1 (MQ=60)
       CGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGG                                                                                     <  SRR4302542.6181078/94‑1 (MQ=60)
       CGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGG                                                                                     >  SRR4302542.2591513/1‑94 (MQ=60)
        GGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGG                                                                                    <  SRR4302542.779952/94‑1 (MQ=60)
        GGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGG                                                                                    >  SRR4302542.6895047/1‑94 (MQ=60)
        GGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGG                                                                                    >  SRR4302542.1580534/1‑94 (MQ=60)
        GGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGG                                                                                    <  SRR4302542.3579528/94‑1 (MQ=60)
        GGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGG                                                                                    <  SRR4302542.992034/94‑1 (MQ=60)
        GGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGG                                                                                    >  SRR4302542.4387137/1‑94 (MQ=60)
         GTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGG                                                                                   <  SRR4302542.5370242/94‑1 (MQ=60)
         GTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGG                                                                                   >  SRR4302542.205367/1‑94 (MQ=60)
          TTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGC                                                                                  <  SRR4302542.3882292/94‑1 (MQ=60)
             ATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACT                                                                               >  SRR4302542.3648546/1‑94 (MQ=60)
              TTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTA                                                                              <  SRR4302542.726731/94‑1 (MQ=60)
                TTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAA                                                                            <  SRR4302542.2362938/94‑1 (MQ=60)
                 TTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAG                                                                           <  SRR4302542.763400/94‑1 (MQ=60)
                 TTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAG                                                                           <  SRR4302542.2676855/94‑1 (MQ=60)
                 TTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAG                                                                           <  SRR4302542.5737246/94‑1 (MQ=60)
                  TCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGT                                                                          >  SRR4302542.3642676/1‑94 (MQ=60)
                  TCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCCTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGT                                                                          <  SRR4302542.7586198/94‑1 (MQ=60)
                   CCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTC                                                                         <  SRR4302542.2525391/94‑1 (MQ=60)
                   CCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTC                                                                         <  SRR4302542.7278189/94‑1 (MQ=60)
                   CCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTC                                                                         >  SRR4302542.354429/1‑94 (MQ=60)
                   CCAGCAGGGAAAGGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCCCAGCCCCAGTTCATGGTATTCCGGGGCCCTAAAGTC                                                                         <  SRR4302542.2400432/94‑1 (MQ=60)
                    CAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCG                                                                        >  SRR4302542.3886537/1‑94 (MQ=60)
                    CAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCG                                                                        >  SRR4302542.4345908/1‑94 (MQ=60)
                     AGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGA                                                                       >  SRR4302542.6690329/1‑94 (MQ=60)
                      GCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAA                                                                      <  SRR4302542.7109078/94‑1 (MQ=60)
                       CAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAG                                                                     <  SRR4302542.5880390/94‑1 (MQ=60)
                       CAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAG                                                                     >  SRR4302542.1263139/1‑94 (MQ=60)
                       CAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAG                                                                     <  SRR4302542.554720/94‑1 (MQ=60)
                       CAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAG                                                                     >  SRR4302542.1763067/1‑94 (MQ=60)
                       CAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAG                                                                     <  SRR4302542.7413883/94‑1 (MQ=60)
                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                    >  SRR4302542.6605400/1‑94 (MQ=60)
                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                    >  SRR4302542.4853554/1‑94 (MQ=60)
                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCTCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTT                                                                   >  SRR4302542.876343/1‑94 (MQ=60)
                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTT                                                                   >  SRR4302542.4042381/1‑94 (MQ=60)
                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTT                                                                   <  SRR4302542.3468256/94‑1 (MQ=60)
                          GGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTC                                                                  >  SRR4302542.4208968/1‑94 (MQ=60)
                          GGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTC                                                                  <  SRR4302542.7202519/94‑1 (MQ=60)
                           GAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCA                                                                 <  SRR4302542.6726001/94‑1 (MQ=60)
                           GAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCA                                                                 >  SRR4302542.4130236/1‑94 (MQ=60)
                           GAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCA                                                                 >  SRR4302542.981034/1‑94 (MQ=60)
                            AAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCAT                                                                >  SRR4302542.4298955/1‑94 (MQ=60)
                            AAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCAT                                                                <  SRR4302542.2946052/94‑1 (MQ=60)
                            AAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCAT                                                                >  SRR4302542.1610332/1‑94 (MQ=60)
                            AAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCAT                                                                <  SRR4302542.5912882/94‑1 (MQ=60)
                            AAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCAT                                                                <  SRR4302542.3100743/94‑1 (MQ=60)
                             AATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATA                                                               <  SRR4302542.1908723/94‑1 (MQ=60)
                             AATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATA                                                               >  SRR4302542.3147154/1‑94 (MQ=60)
                             AATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATA                                                               >  SRR4302542.5180473/1‑94 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              <  SRR4302542.1022319/94‑1 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              >  SRR4302542.6666199/1‑94 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              <  SRR4302542.4868432/94‑1 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              <  SRR4302542.4023617/94‑1 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              <  SRR4302542.819193/94‑1 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              <  SRR4302542.2428588/94‑1 (MQ=60)
                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAACGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                              <  SRR4302542.5784366/94‑1 (MQ=60)
                                GTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAG                                                            >  SRR4302542.3891698/1‑94 (MQ=60)
                                 TATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGC                                                           <  SRR4302542.4526872/94‑1 (MQ=60)
                                 TATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGC                                                           >  SRR4302542.58555/1‑94 (MQ=60)
                                 TATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGC                                                           <  SRR4302542.7394420/94‑1 (MQ=60)
                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                          <  SRR4302542.1560170/94‑1 (MQ=60)
                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                          <  SRR4302542.7019896/94‑1 (MQ=60)
                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                          <  SRR4302542.2593215/94‑1 (MQ=60)
                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                          <  SRR4302542.1224175/94‑1 (MQ=60)
                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                          >  SRR4302542.2971988/1‑94 (MQ=60)
                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGACATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                          <  SRR4302542.4788819/94‑1 (MQ=60)
                                   TGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAA                                                         <  SRR4302542.1534459/94‑1 (MQ=60)
                                     TGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACT                                                       <  SRR4302542.4216924/94‑1 (MQ=60)
                                     TGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACT                                                       <  SRR4302542.4316465/94‑1 (MQ=60)
                                     TGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACT                                                       <  SRR4302542.3129249/94‑1 (MQ=60)
                                     TGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACT                                                       <  SRR4302542.5505099/94‑1 (MQ=60)
                                        CAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTT                                                    >  SRR4302542.7569793/1‑94 (MQ=60)
                                        CAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTT                                                    >  SRR4302542.1595404/1‑94 (MQ=60)
                                        CAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTT                                                    >  SRR4302542.5987118/1‑94 (MQ=60)
                                        CAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCACACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTT                                                    <  SRR4302542.3878306/94‑1 (MQ=60)
                                         AGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTA                                                   >  SRR4302542.7470429/1‑94 (MQ=60)
                                         AGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTA                                                   >  SRR4302542.957921/1‑94 (MQ=60)
                                         AGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTA                                                   >  SRR4302542.2407648/1‑94 (MQ=60)
                                         AGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTA                                                   >  SRR4302542.7343352/1‑94 (MQ=60)
                                          GCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTAT                                                  >  SRR4302542.5701615/1‑94 (MQ=60)
                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                 <  SRR4302542.7017664/94‑1 (MQ=60)
                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                 <  SRR4302542.4357173/94‑1 (MQ=60)
                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                 <  SRR4302542.4009663/94‑1 (MQ=60)
                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                 <  SRR4302542.6301647/94‑1 (MQ=60)
                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                 >  SRR4302542.2404498/1‑94 (MQ=60)
                                            ACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCA                                                <  SRR4302542.5632730/94‑1 (MQ=60)
                                            ACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCA                                                <  SRR4302542.1090063/94‑1 (MQ=60)
                                            ACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCA                                                >  SRR4302542.2955880/1‑94 (MQ=60)
                                            ACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCA                                                <  SRR4302542.5003982/94‑1 (MQ=60)
                                             CATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAA                                               >  SRR4302542.7124944/1‑94 (MQ=60)
                                              ATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAC                                              >  SRR4302542.467566/1‑94 (MQ=60)
                                              ATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAC                                              >  SRR4302542.3790767/1‑94 (MQ=60)
                                                TCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACAT                                            <  SRR4302542.2060306/94‑1 (MQ=60)
                                                TCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACAT                                            >  SRR4302542.2128954/1‑94 (MQ=60)
                                                 CAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAGATG                                           <  SRR4302542.3537747/94‑1 (MQ=60)
                                                 CAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATG                                           <  SRR4302542.5518309/94‑1 (MQ=60)
                                                 CAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATG                                           >  SRR4302542.16590/1‑94 (MQ=60)
                                                 CAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATG                                           <  SRR4302542.1217099/94‑1 (MQ=60)
                                                  AAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGG                                          <  SRR4302542.6767219/94‑1 (MQ=60)
                                                  AAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGG                                          >  SRR4302542.4101405/1‑94 (MQ=60)
                                                  AAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTAGAAGTTCATATAGCAACTGTTATCAACATGG                                          <  SRR4302542.6626729/94‑1 (MQ=60)
                                                   AAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGC                                         >  SRR4302542.4359314/1‑94 (MQ=60)
                                                    AACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCA                                        <  SRR4302542.1231663/94‑1 (MQ=60)
                                                    AACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCA                                        <  SRR4302542.6253956/94‑1 (MQ=60)
                                                    AACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCA                                        <  SRR4302542.3346039/94‑1 (MQ=60)
                                                    AACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCA                                        <  SRR4302542.3087381/94‑1 (MQ=60)
                                                     ACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAG                                       <  SRR4302542.3343018/94‑1 (MQ=60)
                                                     ACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAG                                       <  SRR4302542.1159939/94‑1 (MQ=60)
                                                     ACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAG                                       <  SRR4302542.5925951/94‑1 (MQ=60)
                                                     ACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAG                                       <  SRR4302542.7099236/94‑1 (MQ=60)
                                                      CGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGT                                      >  SRR4302542.1771609/1‑94 (MQ=60)
                                                       GCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTA                                     >  SRR4302542.5256153/1‑94 (MQ=60)
                                                        CAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAA                                    >  SRR4302542.6995671/1‑94 (MQ=60)
                                                        CAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACACGGCAGTAA                                    >  SRR4302542.596628/1‑94 (MQ=60)
                                                         AGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAT                                   <  SRR4302542.4369239/94‑1 (MQ=60)
                                                         AGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAT                                   >  SRR4302542.5573832/1‑94 (MQ=60)
                                                         AGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAT                                   >  SRR4302542.6725413/1‑94 (MQ=60)
                                                         AGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAT                                   <  SRR4302542.1254215/94‑1 (MQ=60)
                                                         AGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAAT                                   >  SRR4302542.3169060/1‑94 (MQ=60)
                                                          GCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATA                                  <  SRR4302542.1374137/94‑1 (MQ=60)
                                                          GCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATA                                  <  SRR4302542.1573078/94‑1 (MQ=60)
                                                           CGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATAC                                 <  SRR4302542.1065948/94‑1 (MQ=60)
                                                           CGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATAC                                 >  SRR4302542.6871004/1‑94 (MQ=60)
                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                >  SRR4302542.3707878/1‑94 (MQ=60)
                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                >  SRR4302542.6985469/1‑94 (MQ=60)
                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                >  SRR4302542.6828261/1‑94 (MQ=60)
                                                             TTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTT                               >  SRR4302542.3064167/1‑94 (MQ=60)
                                                              TGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTC                              >  SRR4302542.2871581/1‑94 (MQ=60)
                                                              TGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTC                              <  SRR4302542.54118/94‑1 (MQ=60)
                                                               GCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAACTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCT                             <  SRR4302542.6280468/94‑1 (MQ=60)
                                                                CTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTG                            >  SRR4302542.2072862/1‑94 (MQ=60)
                                                                CTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTG                            >  SRR4302542.5995951/1‑94 (MQ=60)
                                                                CTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTG                            >  SRR4302542.5535918/1‑94 (MQ=60)
                                                                 TTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGC                           <  SRR4302542.4504036/94‑1 (MQ=60)
                                                                 TTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGC                           >  SRR4302542.2394827/1‑94 (MQ=60)
                                                                  TTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCG                          <  SRR4302542.1008880/94‑1 (MQ=60)
                                                                   TGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGT                         >  SRR4302542.6563663/1‑94 (MQ=60)
                                                                   TGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGT                         <  SRR4302542.3862260/94‑1 (MQ=60)
                                                                   TGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGT                         >  SRR4302542.7393651/1‑94 (MQ=60)
                                                                    GTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTG                        <  SRR4302542.1037926/94‑1 (MQ=60)
                                                                     TCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGC                       >  SRR4302542.2411170/1‑94 (MQ=60)
                                                                      CTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCT                      >  SRR4302542.6856965/1‑94 (MQ=60)
                                                                      CTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCT                      >  SRR4302542.4031161/1‑94 (MQ=60)
                                                                       TTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTG                     <  SRR4302542.1108511/94‑1 (MQ=60)
                                                                        TCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGA                    >  SRR4302542.7604526/1‑94 (MQ=60)
                                                                         CCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAC                   <  SRR4302542.1917367/94‑1 (MQ=60)
                                                                         CCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAC                   >  SRR4302542.5354991/1‑94 (MQ=60)
                                                                         CCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCCAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAC                   >  SRR4302542.6274623/1‑94 (MQ=60)
                                                                          CCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACA                  >  SRR4302542.1867041/1‑94 (MQ=60)
                                                                           CACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAA                 >  SRR4302542.102545/1‑94 (MQ=60)
                                                                           CACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAA                 >  SRR4302542.4721099/1‑94 (MQ=60)
                                                                            ACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAA                <  SRR4302542.3401249/94‑1 (MQ=60)
                                                                              AGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACG              >  SRR4302542.2229096/1‑94 (MQ=60)
                                                                              AGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACG              >  SRR4302542.1543428/1‑94 (MQ=60)
                                                                               GCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGT             >  SRR4302542.6244939/1‑94 (MQ=60)
                                                                               GCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGT             <  SRR4302542.5858391/94‑1 (MQ=60)
                                                                                CGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTA            <  SRR4302542.6471577/94‑1 (MQ=60)
                                                                                 GCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG           <  SRR4302542.1807302/94‑1 (MQ=60)
                                                                                 GCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG           >  SRR4302542.7435474/1‑94 (MQ=60)
                                                                                 GCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG           <  SRR4302542.5899647/94‑1 (MQ=60)
                                                                                   CAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGC         >  SRR4302542.4868141/1‑94 (MQ=60)
                                                                                   CAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGC         >  SRR4302542.5551667/1‑94 (MQ=60)
                                                                                   CAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGC         <  SRR4302542.7302175/94‑1 (MQ=60)
                                                                                   CAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGC         <  SRR4302542.5762127/94‑1 (MQ=60)
                                                                                   CAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGC         >  SRR4302542.4760247/1‑94 (MQ=60)
                                                                                    AGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCT        >  SRR4302542.4286379/1‑94 (MQ=60)
                                                                                    AGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCT        <  SRR4302542.1821738/94‑1 (MQ=60)
                                                                                    AGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCT        <  SRR4302542.2397944/94‑1 (MQ=60)
                                                                                    AGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCT        <  SRR4302542.189887/94‑1 (MQ=60)
                                                                                     GTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTG       >  SRR4302542.3430794/1‑94 (MQ=60)
                                                                                     GTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTG       >  SRR4302542.4734882/1‑94 (MQ=60)
                                                                                     GTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTG       <  SRR4302542.365543/94‑1 (MQ=60)
                                                                                      TTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGT      >  SRR4302542.549777/1‑94 (MQ=60)
                                                                                       TCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTG     <  SRR4302542.3220312/94‑1 (MQ=60)
                                                                                       TCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTG     <  SRR4302542.3134555/94‑1 (MQ=60)
                                                                                       TCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTG     <  SRR4302542.6363375/94‑1 (MQ=60)
                                                                                        CATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGG    <  SRR4302542.3071096/94‑1 (MQ=60)
                                                                                        CATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGG    <  SRR4302542.3743743/94‑1 (MQ=60)
                                                                                        CATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGG    <  SRR4302542.66685/94‑1 (MQ=60)
                                                                                        CATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGG    >  SRR4302542.4666291/1‑94 (MQ=60)
                                                                                         ATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGG   <  SRR4302542.297988/94‑1 (MQ=60)
                                                                                         ATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGG   <  SRR4302542.2047328/94‑1 (MQ=60)
                                                                                          TGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  >  SRR4302542.4355079/1‑94 (MQ=60)
                                                                                          TGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  <  SRR4302542.892457/94‑1 (MQ=60)
                                                                                          TGGCATTCCAGGGCACTAAAGTCGAATTTCATATAGCAACTGTTATCAATATGGCAGGAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  >  SRR4302542.5943599/1‑94 (MQ=60)
                                                                                             |                                                                                          
AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA  >  NC_000913/4066129‑4066312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑