Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,130,398 |
A→G |
D68G (GAC→GGC) |
metF → |
5,10‑methylenetetrahydrofolate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,130,398 | 0 | A | G | 85.5%
| 671.6
/ 103.8
| 290 | D68G (GAC→GGC) | metF | 5,10‑methylenetetrahydrofolate reductase |
| Reads supporting (aligned to +/- strand): ref base A (15/27); new base G (119/129); total (134/156) |
| Fisher's exact test for biased strand distribution p-value = 1.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.97e-01 |
Only 100 of 291 total aligned reads displayed.
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGC > NC_000913/4130307‑4130490
|
gAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGAc < 2:1338046/93‑1 (MQ=255)
gAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGAc < 1:4160112/93‑1 (MQ=255)
cAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGt < 1:1831288/93‑1 (MQ=255)
gACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTAc < 1:4701122/93‑1 (MQ=255)
aCCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACg > 2:4473546/1‑93 (MQ=255)
cccTGTGGAACTCCATCGATCGCCTTACCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGc > 1:855861/1‑93 (MQ=255)
ccTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGca > 2:1488317/1‑93 (MQ=255)
tgtgGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGcaca < 2:1562847/93‑1 (MQ=255)
tgtgGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGcaca > 1:5451329/1‑93 (MQ=255)
gtgGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAg > 1:5280743/1‑93 (MQ=255)
gtgGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAg > 2:6630368/1‑93 (MQ=255)
ggAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCa < 2:5375804/93‑1 (MQ=255)
ggAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCa < 1:2474157/93‑1 (MQ=255)
aCTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCatta < 1:2080516/93‑1 (MQ=255)
aCTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCatta > 1:3424965/1‑93 (MQ=255)
cTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCattat < 2:4058741/93‑1 (MQ=255)
cTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCattat < 1:1736725/93‑1 (MQ=255)
ccATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCAttatta < 2:1028350/93‑1 (MQ=255)
atcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTaaa < 2:4974213/93‑1 (MQ=255)
tcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAg > 1:6852381/1‑93 (MQ=255)
tcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAg > 2:3182372/1‑93 (MQ=255)
tcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAg > 2:5098738/1‑93 (MQ=255)
cgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAgg > 1:5596124/1‑93 (MQ=255)
gatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGc > 1:1228013/1‑93 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa > 2:7112662/1‑93 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa < 2:7404801/93‑1 (MQ=255)
tcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAt > 1:6604130/1‑93 (MQ=255)
tcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAt > 1:5385572/1‑93 (MQ=255)
tcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCAt > 2:396858/1‑93 (MQ=255)
cgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAtt < 1:7170757/93‑1 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTa < 2:7500037/93‑1 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTa > 2:650799/1‑93 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTa > 1:4868145/1‑93 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTa > 1:3300362/1‑93 (MQ=255)
ccTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaa < 2:2759538/93‑1 (MQ=255)
ccTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaa > 1:6233607/1‑93 (MQ=255)
ccTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaa < 2:1606229/93‑1 (MQ=255)
cTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaaa > 1:3541202/1‑93 (MQ=255)
cTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaaa < 1:955822/93‑1 (MQ=255)
cTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTaaa < 2:5242416/93‑1 (MQ=255)
ttAGCAGCCTGAAACCGAAGTTTTTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAg < 2:6266077/93‑1 (MQ=255)
ttAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAg > 1:4030692/1‑93 (MQ=255)
agcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGAt < 2:4120818/93‑1 (MQ=255)
gcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATc < 1:459693/93‑1 (MQ=255)
gcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATc > 1:3132235/1‑93 (MQ=255)
gcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATc < 2:1187206/93‑1 (MQ=255)
cagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCg < 2:3432175/93‑1 (MQ=255)
agcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGc < 2:7333219/93‑1 (MQ=255)
agcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGc > 1:2203239/1‑93 (MQ=255)
gcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCa < 1:50406/93‑1 (MQ=255)
ccTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCAc < 2:5273730/93‑1 (MQ=255)
cTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACt < 1:6082652/93‑1 (MQ=255)
cTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACt > 2:7293799/1‑93 (MQ=255)
cTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACt < 1:1894667/93‑1 (MQ=255)
tGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTg < 2:5669163/93‑1 (MQ=255)
gAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTgg > 2:324170/1‑93 (MQ=255)
gAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTgg < 1:1007639/93‑1 (MQ=255)
aaaCCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGt > 2:5773043/1‑93 (MQ=255)
aaCCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTc > 1:3710643/1‑93 (MQ=255)
aCCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGctct < 1:6969969/93‑1 (MQ=255)
cGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTgg > 2:2641585/1‑93 (MQ=255)
gAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGa > 2:1751396/1‑93 (MQ=255)
gAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGa < 1:3924868/93‑1 (MQ=255)
aaGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGaa < 1:6683529/93‑1 (MQ=255)
aGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAg < 1:3215882/93‑1 (MQ=255)
gTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGc < 2:6249976/93‑1 (MQ=255)
gTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGc < 1:1851936/93‑1 (MQ=255)
ttGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCgg < 1:7356078/93‑1 (MQ=255)
tGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGc < 1:1145189/93‑1 (MQ=255)
gTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCa < 2:550659/93‑1 (MQ=255)
tATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCAc < 1:2148637/93‑1 (MQ=255)
tATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCAc < 2:1386991/93‑1 (MQ=255)
tCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCg < 1:520870/93‑1 (MQ=255)
tCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCg > 1:567746/1‑93 (MQ=255)
ggTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCa < 1:1556916/93‑1 (MQ=255)
tGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATc < 2:5574772/93‑1 (MQ=255)
gACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCt < 2:6362061/93‑1 (MQ=255)
cTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAc < 1:4356896/93‑1 (MQ=255)
cTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAc < 2:3008541/93‑1 (MQ=255)
cTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAc > 1:5955389/1‑93 (MQ=255)
tATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACt < 2:2690000/93‑1 (MQ=255)
tATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACt > 1:1298362/1‑93 (MQ=255)
gcgAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTTAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCAtt > 1:7502479/1‑93 (MQ=255)
gcgAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCAtt < 1:7382519/93‑1 (MQ=255)
gAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGa < 2:3635225/93‑1 (MQ=255)
gAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGa < 2:2454706/93‑1 (MQ=255)
gAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGa > 1:393897/1‑93 (MQ=255)
aCTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATg > 1:2890404/1‑93 (MQ=255)
aCTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATg < 2:6063360/93‑1 (MQ=255)
cTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGc < 1:1441337/93‑1 (MQ=255)
cTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGc > 2:69791/1‑93 (MQ=255)
tCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCg < 2:4806256/93‑1 (MQ=255)
ccGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGa > 1:6524574/1‑93 (MQ=255)
cGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAc > 2:6897712/1‑93 (MQ=255)
ggCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACg > 1:5000365/1‑93 (MQ=255)
gAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGccc > 2:2915871/1‑93 (MQ=255)
aGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCcg < 2:4611730/93‑1 (MQ=255)
aGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCcg > 2:5317674/1‑93 (MQ=255)
gcgcGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCcga < 2:2129559/93‑1 (MQ=255)
gACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAg < 1:6399887/93‑1 (MQ=255)
|
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGC > NC_000913/4130307‑4130490
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT > NC_000913/4130307‑4130491
|
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCC < SRR4302542.6170566/94‑1 (MQ=60)
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCC < SRR4302542.6017593/94‑1 (MQ=60)
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCC < SRR4302542.3035410/94‑1 (MQ=60)
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACC < SRR4302542.4201081/94‑1 (MQ=60)
AGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCG > SRR4302542.1006433/1‑94 (MQ=60)
AGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCG < SRR4302542.2459026/94‑1 (MQ=60)
GCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGT < SRR4302542.4045456/94‑1 (MQ=60)
CAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTA < SRR4302542.1847146/94‑1 (MQ=60)
AGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTAC < SRR4302542.6399288/94‑1 (MQ=60)
AGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTAC < SRR4302542.1594703/94‑1 (MQ=60)
GACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACG > SRR4302542.5284258/1‑94 (MQ=60)
GACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACG < SRR4302542.4747007/94‑1 (MQ=60)
GACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACG > SRR4302542.4714977/1‑94 (MQ=60)
ACCCTGTGGAACTCCATCGATCGCCTTACCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGC > SRR4302542.863242/1‑94 (MQ=60)
CCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCA > SRR4302542.3568590/1‑94 (MQ=60)
CTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACA > SRR4302542.3971241/1‑94 (MQ=60)
CTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACA > SRR4302542.3190341/1‑94 (MQ=60)
CTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACA > SRR4302542.5504288/1‑94 (MQ=60)
TGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAG > SRR4302542.1351890/1‑94 (MQ=60)
TGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAG < SRR4302542.5312821/94‑1 (MQ=60)
TGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAG > SRR4302542.5332089/1‑94 (MQ=60)
GTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGC > SRR4302542.4813727/1‑94 (MQ=60)
GGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCAT < SRR4302542.5054818/94‑1 (MQ=60)
GGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCAT < SRR4302542.4822445/94‑1 (MQ=60)
GGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCAT < SRR4302542.5723813/94‑1 (MQ=60)
GGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCAT < SRR4302542.2498164/94‑1 (MQ=60)
AACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTA > SRR4302542.3457043/1‑94 (MQ=60)
AACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTA < SRR4302542.1169110/94‑1 (MQ=60)
ACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTAT < SRR4302542.1892144/94‑1 (MQ=60)
ACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTAT < SRR4302542.4353936/94‑1 (MQ=60)
ACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTAT < SRR4302542.2098485/94‑1 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATT < SRR4302542.1751794/94‑1 (MQ=60)
TCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTA > SRR4302542.6822087/1‑94 (MQ=60)
CCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAA < SRR4302542.875773/94‑1 (MQ=60)
CCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAA < SRR4302542.1178122/94‑1 (MQ=60)
CATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAA > SRR4302542.6306153/1‑94 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG < SRR4302542.5991592/94‑1 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG > SRR4302542.6919679/1‑94 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG > SRR4302542.6704581/1‑94 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAG < SRR4302542.692748/94‑1 (MQ=60)
TCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGG < SRR4302542.3396882/94‑1 (MQ=60)
TCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGG > SRR4302542.5650501/1‑94 (MQ=60)
TCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGG > SRR4302542.7442991/1‑94 (MQ=60)
CGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGC > SRR4302542.1238575/1‑94 (MQ=60)
CGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGC > SRR4302542.6809740/1‑94 (MQ=60)
CGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGC < SRR4302542.5055383/94‑1 (MQ=60)
GATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCA > SRR4302542.6691247/1‑94 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT > SRR4302542.5437887/1‑94 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT > SRR4302542.6669194/1‑94 (MQ=60)
TCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATT > SRR4302542.5568885/1‑94 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA > SRR4302542.4915538/1‑94 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA < SRR4302542.7241091/94‑1 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA > SRR4302542.3331497/1‑94 (MQ=60)
CGCCATAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA < SRR4302542.6469718/94‑1 (MQ=60)
GCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAA > SRR4302542.6294980/1‑94 (MQ=60)
GCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAA > SRR4302542.7432132/1‑94 (MQ=60)
CCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAA > SRR4302542.3575970/1‑94 (MQ=60)
CCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAA > SRR4302542.3574287/1‑94 (MQ=60)
CCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAA < SRR4302542.1897922/94‑1 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG < SRR4302542.964024/94‑1 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG < SRR4302542.1766211/94‑1 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG < SRR4302542.887353/94‑1 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG > SRR4302542.4070466/1‑94 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG > SRR4302542.6483669/1‑94 (MQ=60)
TTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGA > SRR4302542.142510/1‑94 (MQ=60)
TTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGA < SRR4302542.615205/94‑1 (MQ=60)
TTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGA < SRR4302542.1852206/94‑1 (MQ=60)
TAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGAT < SRR4302542.3341357/94‑1 (MQ=60)
TAGCAGCCTGAAACCGAAGGTTGTATCGGTGACCGATGGCGCGAACTCCGGCGGGCGCGGGCGTAAGCACAGCGTTATTAAAGGCATTAAAGAT < SRR4302542.5716931/94‑1 (MQ=60)
AGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATC > SRR4302542.3162021/1‑94 (MQ=60)
AGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATC > SRR4302542.2054410/1‑94 (MQ=60)
GCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCG < SRR4302542.5177376/94‑1 (MQ=60)
GCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCG < SRR4302542.463667/94‑1 (MQ=60)
CAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGC > SRR4302542.1577528/1‑94 (MQ=60)
CAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGC > SRR4302542.2222203/1‑94 (MQ=60)
CAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGC > SRR4302542.4197787/1‑94 (MQ=60)
CAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGC > SRR4302542.842673/1‑94 (MQ=60)
GCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCAC < SRR4302542.50817/94‑1 (MQ=60)
CCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACT < SRR4302542.4614863/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG < SRR4302542.6141548/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG > SRR4302542.245377/1‑94 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG > SRR4302542.4133088/1‑94 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG < SRR4302542.1247044/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG < SRR4302542.5036537/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG < SRR4302542.1911062/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACCG < SRR4302542.4916433/94‑1 (MQ=60)
GAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGT < SRR4302542.1016321/94‑1 (MQ=60)
GAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGT < SRR4302542.6614989/94‑1 (MQ=60)
AAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTC > SRR4302542.3747353/1‑94 (MQ=60)
AACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCT < SRR4302542.1106087/94‑1 (MQ=60)
AACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCT > SRR4302542.5408646/1‑94 (MQ=60)
ACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGCTCTG < SRR4302542.7038436/94‑1 (MQ=60)
CCGAAGTTTGTATCGGGGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGG > SRR4302542.472675/1‑94 (MQ=60)
GAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAA < SRR4302542.3963595/94‑1 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG < SRR4302542.6640739/94‑1 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG < SRR4302542.6749359/94‑1 (MQ=60)
AGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGC > SRR4302542.1864502/1‑94 (MQ=60)
AGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGC < SRR4302542.3692251/94‑1 (MQ=60)
AGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGC < SRR4302542.3246318/94‑1 (MQ=60)
GTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCG < SRR4302542.7329465/94‑1 (MQ=60)
GTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCG < SRR4302542.1867951/94‑1 (MQ=60)
GTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCG < SRR4302542.5758353/94‑1 (MQ=60)
TTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGC < SRR4302542.7428106/94‑1 (MQ=60)
TGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCA < SRR4302542.1155002/94‑1 (MQ=60)
TGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCA > SRR4302542.5502040/1‑94 (MQ=60)
TATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACC < SRR4302542.2167159/94‑1 (MQ=60)
ATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCG > SRR4302542.572630/1‑94 (MQ=60)
ATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCG > SRR4302542.7163225/1‑94 (MQ=60)
TCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGC < SRR4302542.525376/94‑1 (MQ=60)
CGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCA < SRR4302542.3005457/94‑1 (MQ=60)
CGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCA > SRR4302542.7090398/1‑94 (MQ=60)
CGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCA > SRR4302542.2118841/1‑94 (MQ=60)
CGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCA > SRR4302542.208614/1‑94 (MQ=60)
GGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAT < SRR4302542.1570353/94‑1 (MQ=60)
GGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAT < SRR4302542.2524059/94‑1 (MQ=60)
GACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTT > SRR4302542.4391456/1‑94 (MQ=60)
GACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTT > SRR4302542.1541769/1‑94 (MQ=60)
CCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAC > SRR4302542.6013060/1‑94 (MQ=60)
CTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACT < SRR4302542.4399689/94‑1 (MQ=60)
CTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACT > SRR4302542.1309543/1‑94 (MQ=60)
CTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACT > SRR4302542.2961432/1‑94 (MQ=60)
CTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACT > SRR4302542.22161/1‑94 (MQ=60)
GGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCA < SRR4302542.5635063/94‑1 (MQ=60)
CGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTTAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATT > SRR4302542.7576276/1‑94 (MQ=60)
CGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATT < SRR4302542.5424824/94‑1 (MQ=60)
CGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATT < SRR4302542.5224503/94‑1 (MQ=60)
CGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATT < SRR4302542.827238/94‑1 (MQ=60)
GCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTG < SRR4302542.7454800/94‑1 (MQ=60)
CGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGA > SRR4302542.397303/1‑94 (MQ=60)
CGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGA > SRR4302542.3259851/1‑94 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT < SRR4302542.3235166/94‑1 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT < SRR4302542.3950228/94‑1 (MQ=60)
GAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT > SRR4302542.6088626/1‑94 (MQ=60)
AACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATG > SRR4302542.4562598/1‑94 (MQ=60)
AACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATG > SRR4302542.2918155/1‑94 (MQ=60)
AACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATG > SRR4302542.3789224/1‑94 (MQ=60)
CTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCG < SRR4302542.75490/94‑1 (MQ=60)
CTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCG < SRR4302542.1453784/94‑1 (MQ=60)
TCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGA > SRR4302542.3462411/1‑94 (MQ=60)
TCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGA > SRR4302542.6588868/1‑94 (MQ=60)
CCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAC > SRR4302542.6018477/1‑94 (MQ=60)
CCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAC < SRR4302542.396806/94‑1 (MQ=60)
CCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAC < SRR4302542.1459553/94‑1 (MQ=60)
CGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACG > SRR4302542.5048939/1‑94 (MQ=60)
CGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACG < SRR4302542.6145228/94‑1 (MQ=60)
CGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACG < SRR4302542.1799530/94‑1 (MQ=60)
GGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGC < SRR4302542.2127070/94‑1 (MQ=60)
GGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGC > SRR4302542.2651267/1‑94 (MQ=60)
GGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGC > SRR4302542.7489020/1‑94 (MQ=60)
CGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCC < SRR4302542.1267495/94‑1 (MQ=60)
GAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCG > SRR4302542.7285761/1‑94 (MQ=60)
CGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAG > SRR4302542.5342087/1‑94 (MQ=60)
CGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAG < SRR4302542.1691670/94‑1 (MQ=60)
GGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGC > SRR4302542.7065764/1‑94 (MQ=60)
GACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGC < SRR4302542.6462950/94‑1 (MQ=60)
ACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT < SRR4302542.3248476/94‑1 (MQ=60)
ACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT > SRR4302542.3724319/1‑94 (MQ=60)
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GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT > NC_000913/4130307‑4130491
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
