Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,147,430 |
A→G |
W139R (TGG→CGG) |
yijP ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,147,430 | 0 | A | G | 84.8%
| 690.8
/ 115.6
| 303 | W139R (TGG→CGG) | yijP | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (22/24); new base G (118/139); total (140/163) |
| Fisher's exact test for biased strand distribution p-value = 8.73e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.46e-01 |
Only 100 of 308 total aligned reads displayed.
CGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTG > NC_000913/4147340‑4147521
|
gATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGcag > 2:1087981/1‑93 (MQ=255)
gATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCAcag > 2:1542026/1‑93 (MQ=255)
tCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCgcagca > 1:6676955/1‑93 (MQ=255)
ggATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGa > 1:1697476/1‑93 (MQ=255)
gATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGaa < 2:6787580/93‑1 (MQ=255)
gATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGaa > 2:262087/1‑93 (MQ=255)
gATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGaa < 2:3076744/93‑1 (MQ=255)
gATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGaa < 2:7403791/93‑1 (MQ=255)
cAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGc > 2:1699549/1‑93 (MQ=255)
gAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCa > 1:2281191/1‑93 (MQ=255)
gAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCa > 1:5889790/1‑93 (MQ=255)
gAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCa > 2:6217084/1‑93 (MQ=255)
aaTCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCAc < 2:4710494/93‑1 (MQ=255)
aaTCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCAc > 2:2837171/1‑93 (MQ=255)
aTCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCAcc < 1:3228622/93‑1 (MQ=255)
tCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCAccg > 2:1894394/1‑93 (MQ=255)
aaGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCAccgcc > 1:5197731/1‑93 (MQ=255)
ccATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGta > 2:511290/1‑93 (MQ=255)
ccATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGta > 1:7192165/1‑93 (MQ=255)
aTAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGtata < 2:7314100/93‑1 (MQ=255)
aTAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGtata < 2:6996752/93‑1 (MQ=255)
aTAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGtata > 1:3039461/1‑93 (MQ=255)
tAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAg > 1:6435808/1‑93 (MQ=255)
aaaGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAgg > 1:2438903/1‑93 (MQ=255)
aGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGcc > 1:3258053/1‑93 (MQ=255)
gCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCa > 1:5568636/1‑93 (MQ=255)
gggCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAgcg > 1:284913/1‑93 (MQ=255)
ggCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAgcgc < 2:4357435/93‑1 (MQ=255)
aaaaGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGAt < 1:3819423/93‑1 (MQ=255)
aaaaGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGAt > 1:6057442/1‑93 (MQ=255)
aaGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATaa < 1:4680703/93‑1 (MQ=255)
aaGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATaa < 1:2703990/93‑1 (MQ=255)
gagaCAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGc > 1:2202120/1‑93 (MQ=255)
acaacaTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGcaca < 2:7211883/93‑1 (MQ=255)
caacaTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACaa > 1:108524/1‑93 (MQ=255)
aacaTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAt < 1:673197/93‑1 (MQ=255)
aacaTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAt < 1:117996/93‑1 (MQ=255)
aacaTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAt < 2:6592231/93‑1 (MQ=255)
acaTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAtt > 1:250319/1‑93 (MQ=255)
caTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAttt > 1:3757861/1‑93 (MQ=255)
caTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAttt > 1:1774721/1‑93 (MQ=255)
aTAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAtttt > 1:1335820/1‑93 (MQ=255)
tAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTc > 1:2381256/1‑93 (MQ=255)
tAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTc > 2:6363389/1‑93 (MQ=255)
aaCGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCa < 2:2740387/93‑1 (MQ=255)
aaCGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCa < 1:1438809/93‑1 (MQ=255)
aCGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAg < 1:7529154/93‑1 (MQ=255)
gCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGc > 2:3771170/1‑93 (MQ=255)
ccACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCt < 2:3025436/93‑1 (MQ=255)
aCGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGa < 1:3434322/93‑1 (MQ=255)
aCGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGa > 1:2936561/1‑93 (MQ=255)
ggCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGaaa > 2:7514873/1‑93 (MQ=255)
gCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAt < 2:3654255/93‑1 (MQ=255)
gCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAt > 2:3280958/1‑93 (MQ=255)
gCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAt > 1:4497422/1‑93 (MQ=255)
cTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATa < 1:4155882/93‑1 (MQ=255)
cTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATa < 1:5334677/93‑1 (MQ=255)
ttGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACt < 2:807931/93‑1 (MQ=255)
tGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTg < 1:578188/93‑1 (MQ=255)
ggAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTgg < 1:5836957/93‑1 (MQ=255)
gAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGc < 2:2458876/93‑1 (MQ=255)
gAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGc < 2:133265/93‑1 (MQ=255)
gAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGAAAAGCACAATTTTCAGGCTGAAATACTGGc > 2:3453012/1‑93 (MQ=255)
aaTATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCt > 2:2933062/1‑93 (MQ=255)
aaTATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCt < 2:2256982/93‑1 (MQ=255)
aaTATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCt < 1:6559969/93‑1 (MQ=255)
atatAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCtt > 2:6194059/1‑93 (MQ=255)
atatAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCtt > 2:2979723/1‑93 (MQ=255)
tataGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCttt < 2:7247577/93‑2 (MQ=255)
tataGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTa < 2:498860/93‑1 (MQ=255)
tataGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTa > 2:5276590/1‑93 (MQ=255)
tataGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTa > 2:2211134/1‑93 (MQ=255)
tataGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTa > 2:3504457/1‑93 (MQ=255)
taGCCCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTaaa < 2:7144562/93‑1 (MQ=255)
taGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTaaa < 1:6966157/93‑1 (MQ=255)
taGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTaaa < 1:2348803/93‑1 (MQ=255)
taGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTaaa < 1:869491/93‑1 (MQ=255)
gACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATa < 2:1628197/93‑1 (MQ=255)
aCCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATAc < 2:4210638/93‑1 (MQ=255)
ccGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACt < 1:1878543/93‑1 (MQ=255)
ccGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACt < 2:5362218/93‑1 (MQ=255)
cGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTc < 1:3184437/93‑1 (MQ=255)
ggCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGc < 1:6231357/93‑1 (MQ=255)
ggCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGc > 1:3630372/1‑93 (MQ=255)
ggCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGc > 2:2135/1‑93 (MQ=255)
ggCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGc > 2:4115769/1‑93 (MQ=255)
gcgcAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCt < 2:4897977/93‑1 (MQ=255)
gcgcAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCt < 2:6479092/93‑1 (MQ=255)
gcgcAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCt < 1:5457427/93‑1 (MQ=255)
cgcAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTg < 2:3842132/93‑1 (MQ=255)
cgcAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTg < 2:5574437/93‑1 (MQ=255)
cgcAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTg < 1:6838918/93‑1 (MQ=255)
cAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGc > 1:730684/1‑93 (MQ=255)
cAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGc < 2:5058813/93‑1 (MQ=255)
cAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGc < 1:3929716/93‑1 (MQ=255)
aGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCt < 1:4362731/93‑1 (MQ=255)
ggCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCtt > 1:4896151/1‑93 (MQ=255)
ggCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCtt > 2:3373623/1‑93 (MQ=255)
tgtCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCgtt > 2:1418494/1‑93 (MQ=255)
tCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCgttgg > 2:5906863/1‑93 (MQ=255)
|
CGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTG > NC_000913/4147340‑4147521
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTGTT > NC_000913/4147338‑4147523
|
GGCGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGC > SRR4302542.3424427/1‑94 (MQ=60)
GCGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCA < SRR4302542.4379096/94‑1 (MQ=60)
CGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAG > SRR4302542.4038733/1‑94 (MQ=60)
GATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGC > SRR4302542.7519707/1‑94 (MQ=60)
GATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGC > SRR4302542.233703/1‑94 (MQ=60)
GATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGC > SRR4302542.349394/1‑94 (MQ=60)
GATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGC > SRR4302542.3913142/1‑94 (MQ=60)
GATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGC > SRR4302542.6360411/1‑94 (MQ=60)
ATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCA > SRR4302542.6742733/1‑94 (MQ=60)
ATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCA > SRR4302542.2628264/1‑94 (MQ=60)
CGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGA > SRR4302542.1712182/1‑94 (MQ=60)
CGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGA > SRR4302542.387779/1‑94 (MQ=60)
GATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAAC < SRR4302542.2308715/94‑1 (MQ=60)
ATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACT < SRR4302542.3516577/94‑1 (MQ=60)
ATGCAGAAGCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACT < SRR4302542.4072140/94‑1 (MQ=60)
AGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCA > SRR4302542.5946869/1‑94 (MQ=60)
AGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCA > SRR4302542.2300795/1‑94 (MQ=60)
AATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACC < SRR4302542.2478699/94‑1 (MQ=60)
ATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCG > SRR4302542.5525812/1‑94 (MQ=60)
ATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCG > SRR4302542.6993865/1‑94 (MQ=60)
ATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCG < SRR4302542.3259165/94‑1 (MQ=60)
ATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCG > SRR4302542.1876420/1‑94 (MQ=60)
ATCAAGCCATAAAGCA‑GGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGC > SRR4302542.1191108/1‑94 (MQ=60)
TCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGC > SRR4302542.1436770/1‑94 (MQ=60)
CAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCC > SRR4302542.5248240/1‑94 (MQ=60)
CAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCC > SRR4302542.3031001/1‑94 (MQ=60)
AGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGT > SRR4302542.6597865/1‑94 (MQ=60)
GCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTA > SRR4302542.7262737/1‑94 (MQ=60)
CCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTAT < SRR4302542.2460688/94‑1 (MQ=60)
CCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTAT > SRR4302542.7154557/1‑94 (MQ=60)
CATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATA > SRR4302542.5052306/1‑94 (MQ=60)
CATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATA > SRR4302542.1105646/1‑94 (MQ=60)
CATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATA > SRR4302542.5815104/1‑94 (MQ=60)
CATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATA > SRR4302542.3068490/1‑94 (MQ=60)
ATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAG < SRR4302542.4401696/94‑1 (MQ=60)
ATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAG < SRR4302542.6998210/94‑1 (MQ=60)
ATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAG < SRR4302542.53876/94‑1 (MQ=60)
ATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAG > SRR4302542.6499209/1‑94 (MQ=60)
ATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAG < SRR4302542.292131/94‑1 (MQ=60)
ATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAG < SRR4302542.16522/94‑1 (MQ=60)
TAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGG > SRR4302542.2462637/1‑94 (MQ=60)
AAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGC > SRR4302542.2586155/1‑94 (MQ=60)
AAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCC > SRR4302542.3288825/1‑94 (MQ=60)
AGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCA > SRR4302542.5622745/1‑94 (MQ=60)
AGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCG > SRR4302542.287395/1‑94 (MQ=60)
AGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCG > SRR4302542.6233028/1‑94 (MQ=60)
GGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCG > SRR4302542.3805671/1‑94 (MQ=60)
GGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCG < SRR4302542.3129287/94‑1 (MQ=60)
CAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGAT > SRR4302542.6116076/1‑94 (MQ=60)
CAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGAT > SRR4302542.5747018/1‑94 (MQ=60)
CAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGAT < SRR4302542.3384706/94‑1 (MQ=60)
AAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATA > SRR4302542.6824591/1‑94 (MQ=60)
AAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATA < SRR4302542.3857199/94‑1 (MQ=60)
AAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATA > SRR4302542.4581485/1‑94 (MQ=60)
AAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATA > SRR4302542.2164719/1‑94 (MQ=60)
AAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAG < SRR4302542.4726442/94‑1 (MQ=60)
AAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAG < SRR4302542.2730074/94‑1 (MQ=60)
AGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGC > SRR4302542.6560363/1‑94 (MQ=60)
AGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGC > SRR4302542.2244194/1‑94 (MQ=60)
AGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGC > SRR4302542.2221078/1‑94 (MQ=60)
AGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGC < SRR4302542.6052026/94‑1 (MQ=60)
AGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCNN > SRR4302542.1332795/1‑94 (MQ=60)
AGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCAC > SRR4302542.5549324/1‑94 (MQ=60)
AGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCAC < SRR4302542.2378292/94‑1 (MQ=60)
AGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCAC < SRR4302542.4036327/94‑1 (MQ=60)
ACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAA > SRR4302542.109415/1‑94 (MQ=60)
CAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAAT > SRR4302542.4573757/1‑94 (MQ=60)
AACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATT < SRR4302542.679006/94‑1 (MQ=60)
AACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATT > SRR4302542.4443950/1‑94 (MQ=60)
AACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATT > SRR4302542.3854390/1‑94 (MQ=60)
AACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATT < SRR4302542.118969/94‑1 (MQ=60)
AACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATT > SRR4302542.6798638/1‑94 (MQ=60)
AACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATT > SRR4302542.252457/1‑94 (MQ=60)
ACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTT > SRR4302542.1790104/1‑94 (MQ=60)
ACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTT > SRR4302542.3795035/1‑94 (MQ=60)
CATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTT > SRR4302542.99131/1‑94 (MQ=60)
CATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTT > SRR4302542.1347321/1‑94 (MQ=60)
ATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTC > SRR4302542.2402982/1‑94 (MQ=60)
AACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAG < SRR4302542.1451238/94‑1 (MQ=60)
ACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGG < SRR4302542.6777754/94‑1 (MQ=60)
ACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGG < SRR4302542.7603172/94‑1 (MQ=60)
ACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGG < SRR4302542.1763248/94‑1 (MQ=60)
ACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGG < SRR4302542.3685962/94‑1 (MQ=60)
ACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGG > SRR4302542.5351702/1‑94 (MQ=60)
CGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGC > SRR4302542.1858956/1‑94 (MQ=60)
GCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCT < SRR4302542.1775516/94‑1 (MQ=60)
CCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTG < SRR4302542.5217370/94‑1 (MQ=60)
CACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGA > SRR4302542.2964689/1‑94 (MQ=60)
ACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAA < SRR4302542.3466472/94‑1 (MQ=60)
GGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAT > SRR4302542.4541534/1‑94 (MQ=60)
GGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAT < SRR4302542.3036921/94‑1 (MQ=60)
GGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAT > SRR4302542.2427993/1‑94 (MQ=60)
GGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAT > SRR4302542.6413522/1‑94 (MQ=60)
CTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATAC < SRR4302542.4196794/94‑1 (MQ=60)
CTTTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATAC < SRR4302542.5386510/94‑1 (MQ=60)
TTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCGACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTG < SRR4302542.7337281/94‑1 (MQ=60)
TTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTG > SRR4302542.5946089/1‑94 (MQ=60)
TTGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTG > SRR4302542.6207905/1‑94 (MQ=60)
TGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGG < SRR4302542.583193/94‑1 (MQ=60)
TGGAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGG < SRR4302542.748020/94‑1 (MQ=60)
GGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGC < SRR4302542.5893585/94‑1 (MQ=60)
GAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCCCCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCT < SRR4302542.3674062/94‑1 (MQ=60)
GAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCT < SRR4302542.144423/94‑1 (MQ=60)
GAATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCT < SRR4302542.6793739/94‑1 (MQ=60)
AATATAGACCGGGGGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTT < SRR4302542.6624627/94‑1 (MQ=60)
AATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTT < SRR4302542.5842004/94‑1 (MQ=60)
AATATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTT > SRR4302542.3282015/1‑94 (MQ=60)
AATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTT < SRR4302542.6624626/94‑1 (MQ=60)
TATAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAA < SRR4302542.1967232/94‑1 (MQ=60)
TAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAAT < SRR4302542.2368958/94‑1 (MQ=60)
TAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAAT < SRR4302542.876984/94‑1 (MQ=60)
TAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAAT < SRR4302542.2627285/94‑1 (MQ=60)
TAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAAT < SRR4302542.3285897/94‑1 (MQ=60)
TAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAAT < SRR4302542.7034599/94‑1 (MQ=60)
TAGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAAT < SRR4302542.2740787/94‑1 (MQ=60)
AGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATA > SRR4302542.820030/1‑94 (MQ=60)
AGACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATA > SRR4302542.813849/1‑94 (MQ=60)
GACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATAC < SRR4302542.5908038/94‑1 (MQ=60)
ACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACT > SRR4302542.3390609/1‑94 (MQ=60)
ACCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACT < SRR4302542.549959/94‑1 (MQ=60)
CCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTC < SRR4302542.1894804/94‑1 (MQ=60)
CCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTC < SRR4302542.2380412/94‑1 (MQ=60)
CCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTC < SRR4302542.4882846/94‑1 (MQ=60)
CCGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTC > SRR4302542.3257463/1‑94 (MQ=60)
CGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCG < SRR4302542.3214605/94‑1 (MQ=60)
CGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCG < SRR4302542.294327/94‑1 (MQ=60)
CGGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCG > SRR4302542.2526927/1‑94 (MQ=60)
GGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGC < SRR4302542.5279139/94‑1 (MQ=60)
GGGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGC > SRR4302542.3664195/1‑94 (MQ=60)
GGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCT < SRR4302542.6292711/94‑1 (MQ=60)
GGCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCT < SRR4302542.6230412/94‑1 (MQ=60)
GCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTG < SRR4302542.5510443/94‑1 (MQ=60)
GCGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAAGACTGGCTTAAATACTCGCTG < SRR4302542.3250111/94‑1 (MQ=60)
CGCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGG < SRR4302542.6906114/94‑1 (MQ=60)
GCAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGC > SRR4302542.736984/1‑94 (MQ=60)
CAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCT < SRR4302542.4317903/94‑1 (MQ=60)
CAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCT < SRR4302542.4466082/94‑1 (MQ=60)
CAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCT > SRR4302542.976073/1‑94 (MQ=60)
CAGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCT > SRR4302542.1699579/1‑94 (MQ=60)
CAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCT < SRR4302542.3968494/94‑1 (MQ=60)
AGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTT < SRR4302542.4405569/94‑1 (MQ=60)
AGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTT > SRR4302542.6110168/1‑94 (MQ=60)
AGGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTT > SRR4302542.4943744/1‑94 (MQ=60)
GGCGTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTC < SRR4302542.1144697/94‑1 (MQ=60)
GTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTT < SRR4302542.4875529/94‑1 (MQ=60)
GTGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTT < SRR4302542.2244428/94‑1 (MQ=60)
TGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTG > SRR4302542.7277194/1‑94 (MQ=60)
TGTCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTG < SRR4302542.5872498/94‑1 (MQ=60)
GTCCGCAGCAGAACTGCCTCCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGG < SRR4302542.6665927/94‑1 (MQ=60)
GTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGG < SRR4302542.7220950/94‑1 (MQ=60)
TCCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGT < SRR4302542.2848561/94‑1 (MQ=60)
CCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTG < SRR4302542.3801084/94‑1 (MQ=60)
CCGCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTG < SRR4302542.4247971/94‑1 (MQ=60)
GCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGACATACTGGCTTAAATACTCGCTGGCTTCGTTGGTGTT > SRR4302542.7071086/1‑94 (MQ=60)
GCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTGTT < SRR4302542.5926994/94‑1 (MQ=60)
GCAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTGTT < SRR4302542.3433219/94‑1 (MQ=60)
|
GGCGATCGGATGCAGAATCAAGCCATAAAGCAGGGCAAAAGAGACAACATAACGCCACGGCTTTGGAATATAGACCGGGCGCAGGCGTGTCCACAGCAGAACTGCCACCGCCGTATAGGCCAGCGCGATAAGCACAATTTTCAGGCTGAAATACTGGCTTAAATACTCGCTGGCTTCGTTGGTGTT > NC_000913/4147338‑4147523
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
