Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 1061 | 294.1 | 15065038 | 98.6% | 14854127 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,200,901 | A→G | *466W (TGA→TGG) T2A (ACG→GCG) |
hydH → hydG → |
HydH HydG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,200,901 | 0 | A | G | 84.7% | 656.9 / 113.1 | 287 | *466W (TGA→TGG) T2A (ACG→GCG) | hydH hydG | HydH HydG |
| Reads supporting (aligned to +/- strand): ref base A (20/24); new base G (122/121); total (142/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.97e-01 | |||||||||||
Only 100 of 288 total aligned reads displayed.
ACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > NC_000913/4200812‑4200990 | aCAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGgcgc > 2:1934689/1‑93 (MQ=255) cAATTCGGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCa > 2:3139427/1‑93 (MQ=255) cAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCa > 1:3757622/1‑93 (MQ=255) aaTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCAc < 1:6334017/93‑1 (MQ=255) aTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACg > 2:252110/1‑93 (MQ=255) aTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACg > 2:4333900/1‑93 (MQ=255) ttCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGa > 1:659826/1‑93 (MQ=255) tCAGGTCGCAAGCCGGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGat < 2:6983649/93‑1 (MQ=255) tCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGat < 2:7308651/93‑1 (MQ=255) tCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGat > 1:2787720/1‑93 (MQ=255) tCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGat < 1:3227353/93‑1 (MQ=255) cAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGata < 2:2757723/93‑1 (MQ=255) cAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGata < 2:2281020/93‑1 (MQ=255) aGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGataa > 2:654579/1‑93 (MQ=255) ggTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataat > 2:6006819/1‑93 (MQ=255) ggTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataat > 1:7223622/1‑93 (MQ=255) ggTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGataat > 2:4081594/1‑93 (MQ=255) gTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataata < 1:4242647/93‑1 (MQ=255) tCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCAGCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAatat > 1:5385041/1‑93 (MQ=255) cGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATc < 2:2695035/93‑1 (MQ=255) cAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGa < 1:6526729/93‑1 (MQ=255) cAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGa < 1:1418196/93‑1 (MQ=255) cAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGa > 2:1071893/1‑93 (MQ=255) aGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGata > 2:468650/1‑93 (MQ=255) gCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGatat < 1:6005247/93‑1 (MQ=255) gCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGatat > 2:16712/1‑93 (MQ=255) gCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGatat < 2:6408612/93‑1 (MQ=255) gCCAGGAGGGAAAAAGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGatat > 2:5182636/1‑93 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc > 1:840658/1‑93 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc > 1:252989/1‑93 (MQ=255) aggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCt > 1:3934625/1‑93 (MQ=255) aggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCt < 1:5467180/93‑1 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg < 2:6712765/93‑1 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg > 2:750932/1‑93 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg > 1:4190581/1‑93 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtg < 2:5431009/93‑1 (MQ=255) ggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtgg > 1:1259145/1‑93 (MQ=255) ggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtgg < 2:6824583/93‑1 (MQ=255) ggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtgg > 1:1455994/1‑93 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt > 1:4832248/1‑93 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt < 2:5665880/93‑1 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg > 1:4573888/1‑93 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg > 2:5733562/1‑93 (MQ=255) ggCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatg < 2:1828433/93‑1 (MQ=255) cTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatgat < 1:1151801/93‑1 (MQ=255) cAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAtgatga < 2:4835676/93‑1 (MQ=255) cAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGAtgatga < 2:3509164/93‑1 (MQ=255) aaCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAc > 2:7408772/1‑93 (MQ=255) aCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACa < 1:7494291/93‑1 (MQ=255) cGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAt < 2:3887714/93‑1 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa < 2:4483880/93‑1 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa < 1:2005843/93‑1 (MQ=255) cccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCa < 2:3096457/93‑1 (MQ=255) cccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCa < 1:7364885/93‑1 (MQ=255) ctctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt > 1:3928470/1‑93 (MQ=255) ctctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt < 2:3006275/93‑1 (MQ=255) ctctGGCTTCCGGCCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGCGGTGGATGATGACATTAGCCACt > 1:5690368/1‑93 (MQ=255) tctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTg > 2:1735411/1‑93 (MQ=255) tctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTg < 2:7211747/93‑1 (MQ=255) tctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTg > 1:1058153/1‑93 (MQ=255) ctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGc < 2:3539008/93‑1 (MQ=255) ctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGc > 2:5243796/1‑93 (MQ=255) tGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCa > 2:2182271/1‑93 (MQ=255) cTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTa > 1:274600/1‑93 (MQ=255) ttCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAt > 1:4308618/1‑93 (MQ=255) ccGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAttt < 1:5301107/93‑1 (MQ=255) ccGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAttt < 2:1231526/93‑1 (MQ=255) ccGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAttt > 1:3480795/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 1:7441512/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 2:2916458/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 1:2321813/1‑93 (MQ=255) tCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCa < 1:2576459/93‑1 (MQ=255) tCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCa < 2:6271866/93‑1 (MQ=255) tCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCa < 2:4885607/93‑1 (MQ=255) cAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAg < 2:4678038/93‑1 (MQ=255) aaTATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAgg > 2:3414687/1‑93 (MQ=255) aaTATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAgg > 2:1380250/1‑93 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt < 1:5952010/93‑1 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt > 1:5834319/1‑93 (MQ=255) ttACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCttt > 1:1924938/1‑93 (MQ=255) aCGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAc < 1:6425538/93‑1 (MQ=255) aCGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAc < 1:886291/93‑1 (MQ=255) cgcgTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACt > 2:3755687/1‑93 (MQ=255) cgcgTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACt < 2:7099151/93‑1 (MQ=255) gTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcg < 1:5985680/93‑1 (MQ=255) gTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcg > 2:5016314/1‑93 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc < 2:3913361/93‑1 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc > 2:1119646/1‑93 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc > 2:5752976/1‑93 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc > 2:5897489/1‑93 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc < 1:3333334/93‑1 (MQ=255) aGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCgg > 2:4059968/1‑93 (MQ=255) cccACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgg < 1:4944888/93‑1 (MQ=255) ccACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTggg < 2:5622453/93‑1 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg > 1:5214819/1‑93 (MQ=255) cacaAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg < 1:4609233/93‑1 (MQ=255) caAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCt > 1:5144485/1‑93 (MQ=255) ggATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtata > 2:3236597/1‑93 (MQ=255) gATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATaa < 2:1595610/93‑1 (MQ=255) gATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATaa < 2:260921/93‑1 (MQ=255) | ACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > NC_000913/4200812‑4200990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTCG > NC_000913/4200808‑4200994 | TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG > SRR4302542.1068290/1‑94 (MQ=60)TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG < SRR4302542.6869821/94‑1 (MQ=60)TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG < SRR4302542.1325438/94‑1 (MQ=60) ACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCA > SRR4302542.3794794/1‑94 (MQ=60) AATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACG > SRR4302542.219153/1‑94 (MQ=60) AATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACG < SRR4302542.6396426/94‑1 (MQ=60) ATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGA > SRR4302542.665513/1‑94 (MQ=60) TTCGGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGAT < SRR4302542.1297322/94‑1 (MQ=60) TTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGAT > SRR4302542.2814566/1‑94 (MQ=60) TCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATA < SRR4302542.5383546/94‑1 (MQ=60) TCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATA < SRR4302542.3257886/94‑1 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA > SRR4302542.3454795/1‑94 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA < SRR4302542.2794842/94‑1 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA > SRR4302542.5855992/1‑94 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA > SRR4302542.7510885/1‑94 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA > SRR4302542.4937470/1‑94 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAAT > SRR4302542.7294478/1‑94 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAAT > SRR4302542.463188/1‑94 (MQ=60) GGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATA > SRR4302542.4415326/1‑94 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCAGCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT > SRR4302542.5437351/1‑94 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT < SRR4302542.792444/94‑1 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT < SRR4302542.6422082/94‑1 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT < SRR4302542.4284460/94‑1 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT > SRR4302542.4327371/1‑94 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT > SRR4302542.2352172/1‑94 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT < SRR4302542.4337512/94‑1 (MQ=60) CGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCG < SRR4302542.6535305/94‑1 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGAT < SRR4302542.1430473/94‑1 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGAT < SRR4302542.6591048/94‑1 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGAT < SRR4302542.6517115/94‑1 (MQ=60) GCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATT < SRR4302542.6063403/94‑1 (MQ=60) CCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTC > SRR4302542.255150/1‑94 (MQ=60) CCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTC > SRR4302542.847921/1‑94 (MQ=60) CAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCT > SRR4302542.3973445/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302542.5520285/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302542.4231904/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302542.3840806/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302542.4657276/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302542.1158445/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302542.2733203/1‑94 (MQ=60) GGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGG < SRR4302542.2092211/94‑1 (MQ=60) GGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGG > SRR4302542.4709201/1‑94 (MQ=60) GAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGT < SRR4302542.663318/94‑1 (MQ=60) GAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGT < SRR4302542.2797832/94‑1 (MQ=60) AGGGAAAAGGCTCAACGGTCACCCTCTGGCTTCCGGTCAAAATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGAG > SRR4302542.765440/1‑94 (MQ=60) GGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGG > SRR4302542.1269974/1‑94 (MQ=60) GGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGG > SRR4302542.1468561/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGT > SRR4302542.4879325/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGT > SRR4302542.6042948/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGT > SRR4302542.5377941/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGT > SRR4302542.2987842/1‑94 (MQ=60) GAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG < SRR4302542.3731402/94‑1 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGG > SRR4302542.2524631/1‑94 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGG > SRR4302542.4618642/1‑94 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGG < SRR4302542.1250834/94‑1 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGG > SRR4302542.3357447/1‑94 (MQ=60) GGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGA > SRR4302542.5090208/1‑94 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG > SRR4302542.1986877/1‑94 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG > SRR4302542.4627482/1‑94 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG < SRR4302542.5554075/94‑1 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG < SRR4302542.1161673/94‑1 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG > SRR4302542.6643250/1‑94 (MQ=60) AACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACA > SRR4302542.2582678/1‑94 (MQ=60) AACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACA > SRR4302542.5992332/1‑94 (MQ=60) ACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAT < SRR4302542.7567876/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302542.4944449/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302542.6088304/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302542.4009987/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302542.2023166/94‑1 (MQ=60) CACGCTCTGGTTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCCCGAGAATATCGATATTCTGGTGGTGGATGATGACATTAGCC < SRR4302542.734205/94‑1 (MQ=60) CACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCC < SRR4302542.325613/94‑1 (MQ=60) ACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCA > SRR4302542.7408533/1‑94 (MQ=60) CCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAC > SRR4302542.1521034/1‑94 (MQ=60) CCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAC < SRR4302542.7437022/94‑1 (MQ=60) CCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT > SRR4302542.3967231/1‑94 (MQ=60) CCTCTGGCTTCCGGCCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGCGGTGGATGATGACATTAGCCACT > SRR4302542.5745632/1‑94 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG > SRR4302542.1067248/1‑94 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG > SRR4302542.520624/1‑94 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG > SRR4302542.5339551/1‑94 (MQ=60) CTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA < SRR4302542.7522518/94‑1 (MQ=60) CTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA > SRR4302542.852792/1‑94 (MQ=60) TGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCAC < SRR4302542.6055629/94‑1 (MQ=60) TGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCAC > SRR4302542.3954411/1‑94 (MQ=60) GGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACT < SRR4302542.5938578/94‑1 (MQ=60) GGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACT < SRR4302542.995998/94‑1 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTA > SRR4302542.4276303/1‑94 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTA > SRR4302542.276950/1‑94 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGAACTA > SRR4302542.7005471/1‑94 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTA > SRR4302542.4267491/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302542.5882727/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302542.4350971/1‑94 (MQ=60) TTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATT > SRR4302542.7500644/1‑94 (MQ=60) TCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTT > SRR4302542.3513371/1‑94 (MQ=60) CCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTT < SRR4302542.5352620/94‑1 (MQ=60) CCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTT > SRR4302542.3648412/1‑94 (MQ=60) GGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGC > SRR4302542.7514377/1‑94 (MQ=60) GGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGC > SRR4302542.2341718/1‑94 (MQ=60) TCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAG < SRR4302542.2601440/94‑1 (MQ=60) CAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGG < SRR4302542.3471575/94‑1 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC > SRR4302542.1430168/1‑94 (MQ=60) ATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCT < SRR4302542.3967823/94‑1 (MQ=60) ATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCT < SRR4302542.4464881/94‑1 (MQ=60) ATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCT > SRR4302542.5890923/1‑94 (MQ=60) TATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTT < SRR4302542.6009656/94‑1 (MQ=60) ATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTT > SRR4302542.1941563/1‑94 (MQ=60) ATTACGCGTAAGGACCAACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTT > SRR4302542.1948804/1‑94 (MQ=60) TTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTA < SRR4302542.419639/94‑1 (MQ=60) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302542.121267/94‑1 (MQ=60) ACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACT < SRR4302542.6488857/94‑1 (MQ=60) ACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACT < SRR4302542.3133695/94‑1 (MQ=60) ACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACAATTTTGCAGGCTTTACT < SRR4302542.1445026/94‑1 (MQ=60) ACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACT < SRR4302542.893954/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCGCTGCACTATTTTGCAGGCTTTACTGCG < SRR4302542.6180388/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG < SRR4302542.1443307/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG < SRR4302542.511521/94‑1 (MQ=60) GTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGC < SRR4302542.6043662/94‑1 (MQ=60) TAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCG < SRR4302542.3364701/94‑1 (MQ=60) TAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCG < SRR4302542.6458875/94‑1 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG < SRR4302542.5513757/94‑1 (MQ=60) GACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTG > SRR4302542.6039213/1‑94 (MQ=60) ACCTACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGG > SRR4302542.940797/1‑94 (MQ=60) ACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGG > SRR4302542.5329951/1‑94 (MQ=60) ACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGG < SRR4302542.188612/94‑1 (MQ=60) CCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGG < SRR4302542.4992935/94‑1 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG < SRR4302542.2728791/94‑1 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG > SRR4302542.89293/1‑94 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG > SRR4302542.5265530/1‑94 (MQ=60) CACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGC < SRR4302542.4654275/94‑1 (MQ=60) CACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGC > SRR4302542.6942176/1‑94 (MQ=60) ACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCT > SRR4302542.5194497/1‑94 (MQ=60) AAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTAT > SRR4302542.569630/1‑94 (MQ=60) AAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTAT > SRR4302542.5443118/1‑94 (MQ=60) GGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTC > SRR4302542.6527912/1‑94 (MQ=60) GCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTCG < SRR4302542.3733961/94‑1 (MQ=60) | TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTCG > NC_000913/4200808‑4200994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |