Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,389,966 A→G noncoding (29/76 nt) glyV → tRNA‑Gly

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,389,9660AG82.5% 534.4 / 105.7 251noncoding (29/76 nt)glyVtRNA‑Gly
Reads supporting (aligned to +/- strand):  ref base A (26/18);  new base G (110/97);  total (136/115)
Fisher's exact test for biased strand distribution p-value = 5.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 253 total aligned reads displayed.

ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATA  >  NC_000913/4389876‑4390058
                                                                                          |                                                                                            
ataATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAcc                                                                                            <  1:3368215/93‑1 (MQ=255)
 taATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCt                                                                                           <  2:7316276/93‑1 (MQ=255)
 taATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCt                                                                                           >  1:6364670/1‑93 (MQ=255)
 taATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCt                                                                                           <  2:1766286/93‑1 (MQ=255)
 taATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCt                                                                                           <  2:2029221/93‑1 (MQ=255)
  aaTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCtt                                                                                          <  1:4618266/93‑1 (MQ=255)
   aTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTg                                                                                         >  1:1034908/1‑93 (MQ=255)
     gcgcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGcc                                                                                       >  2:59014/1‑93 (MQ=255)
      cgcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCa                                                                                      <  1:3171268/93‑1 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                     <  1:3319606/93‑1 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                     <  1:7334254/93‑1 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                     >  2:2592638/1‑93 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                     <  2:470082/93‑1 (MQ=255)
       gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCaa                                                                                     >  1:6434899/1‑93 (MQ=255)
        ccTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAg                                                                                    <  1:6223471/93‑1 (MQ=255)
         cTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAgg                                                                                   >  1:303997/1‑93 (MQ=255)
         cTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg                                                                                   >  1:5240436/1‑93 (MQ=255)
          tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGt                                                                                  >  2:6948551/1‑93 (MQ=255)
           cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTc                                                                                 >  1:2965981/1‑93 (MQ=255)
            ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCg                                                                                <  2:5444148/93‑1 (MQ=255)
            ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCg                                                                                >  1:6033413/1‑93 (MQ=255)
            ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCg                                                                                >  1:5481615/1‑93 (MQ=255)
              gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCggg                                                                              <  2:1342706/93‑1 (MQ=255)
              gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCggg                                                                              >  2:580456/1‑93 (MQ=255)
              gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCggg                                                                              >  1:5316057/1‑93 (MQ=255)
               tAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCgggg                                                                             >  2:1446951/1‑93 (MQ=255)
               tAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCgggg                                                                             <  1:1115590/93‑1 (MQ=255)
               tAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg                                                                             >  1:3935032/1‑93 (MQ=255)
                 acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTc                                                                           >  2:1138598/1‑93 (MQ=255)
                 acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTc                                                                           >  2:984223/1‑93 (MQ=255)
                   gacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTcgc                                                                         <  2:5930916/93‑1 (MQ=255)
                   gacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTcgc                                                                         >  2:4969409/1‑93 (MQ=255)
                    acgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTcgcg                                                                        >  2:225581/1‑93 (MQ=255)
                    acgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgcg                                                                        >  2:2422234/1‑93 (MQ=255)
                      gCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAg                                                                      <  1:1310345/93‑1 (MQ=255)
                      gCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAg                                                                      >  2:6484588/1‑93 (MQ=255)
                      gCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAg                                                                      >  1:4335201/1‑93 (MQ=255)
                      gCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAg                                                                      >  2:3270236/1‑93 (MQ=255)
                       cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGt                                                                     >  2:1031650/1‑93 (MQ=255)
                        aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGtt                                                                    <  1:2197232/93‑1 (MQ=255)
                        aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGtt                                                                    <  1:7520102/93‑1 (MQ=255)
                        aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGtt                                                                    <  2:5220682/93‑1 (MQ=255)
                         gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                   >  2:2152051/1‑93 (MQ=255)
                         gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                   >  2:1269590/1‑93 (MQ=255)
                         gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                   <  1:354618/93‑1 (MQ=255)
                          aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCg                                                                  >  1:1407912/1‑93 (MQ=255)
                           aaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGa                                                                 <  1:6966701/93‑1 (MQ=255)
                            aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAg                                                                <  2:3018047/93‑1 (MQ=255)
                             tGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt                                                               <  2:4466043/93‑1 (MQ=255)
                              gCGTAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTTGCGAGTTCGAGtc                                                              <  2:4890802/93‑1 (MQ=21)
                              gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc                                                              <  2:2716690/93‑1 (MQ=255)
                               cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                             <  1:3219708/93‑1 (MQ=255)
                               cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                             >  2:1650261/1‑93 (MQ=255)
                                gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                            >  2:7393713/1‑93 (MQ=255)
                                gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                            <  1:1915175/93‑1 (MQ=255)
                                gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                            <  1:4147538/93‑1 (MQ=255)
                                 aaaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg                                                           >  1:669652/1‑93 (MQ=255)
                                   aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                         <  2:3540731/93‑1 (MQ=255)
                                   aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                         <  1:2667479/93‑1 (MQ=255)
                                     ttACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc                                                       <  2:1871573/93‑1 (MQ=255)
                                     ttACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc                                                       >  1:5948201/1‑93 (MQ=255)
                                          aaaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCt                                                  >  1:2035331/1‑93 (MQ=255)
                                           aaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTc                                                 >  2:922058/1‑93 (MQ=255)
                                            aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc                                                <  1:2485431/93‑1 (MQ=255)
                                              cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaa                                              <  2:6712976/93‑1 (MQ=255)
                                                aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaaa                                            >  1:7475833/1‑93 (MQ=255)
                                                aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaaa                                            <  1:2894912/93‑1 (MQ=255)
                                                aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaaa                                            >  1:5771355/1‑93 (MQ=255)
                                                aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaaa                                            <  1:3661617/93‑1 (MQ=255)
                                                 aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAt                                           <  2:6794344/93‑1 (MQ=255)
                                                 aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAt                                           >  2:6588844/1‑93 (MQ=255)
                                                  aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                          >  1:38963/1‑93 (MQ=255)
                                                  aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                          >  2:1557890/1‑93 (MQ=255)
                                                   ttAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAttt                                         <  2:3827667/93‑1 (MQ=255)
                                                    tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTg                                        <  1:6775926/93‑1 (MQ=255)
                                                    tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTg                                        >  1:7393518/1‑93 (MQ=255)
                                                       gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaa                                     >  2:4629408/1‑93 (MQ=255)
                                                        tagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa                                    <  2:1072239/93‑1 (MQ=255)
                                                        tagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa                                    <  2:6348370/93‑1 (MQ=38)
                                                          gtaCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt                                  <  2:1046674/93‑1 (MQ=255)
                                                           taCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc                                                              >  2:5366077/1‑64 (MQ=255)
                                                            aCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc                                <  1:4928935/93‑1 (MQ=255)
                                                            aCGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc                                <  2:5653769/93‑1 (MQ=255)
                                                                 ggAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa                           >  1:3426757/1‑93 (MQ=40)
                                                                  gAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa                          >  2:6125952/1‑93 (MQ=255)
                                                                  gAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa                          <  1:4893032/93‑1 (MQ=255)
                                                                   aaTAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                         >  2:844869/1‑93 (MQ=255)
                                                                   aaTAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                         >  2:3924735/1‑93 (MQ=255)
                                                                   aaTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                         <  2:5609899/93‑1 (MQ=255)
                                                                      aGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac                      <  2:3672907/93‑1 (MQ=255)
                                                                      aGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac                      <  2:3040428/93‑1 (MQ=255)
                                                                      aGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac                      <  2:6893642/93‑1 (MQ=255)
                                                                       gCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcaca                     <  1:5067246/93‑1 (MQ=255)
                                                                         tCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGa                   >  2:2246607/1‑93 (MQ=255)
                                                                         tCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGa                   >  1:1869189/1‑93 (MQ=255)
                                                                          cAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGac                  <  2:4334651/93‑1 (MQ=255)
                                                                           aGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGacc                 <  1:1691276/93‑1 (MQ=255)
                                                                                 tAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCaa           >  2:7111495/1‑93 (MQ=255)
                                                                                 tAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCaa           >  2:2887125/1‑93 (MQ=255)
                                                                                          aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATa  <  1:1635283/93‑1 (MQ=255)
                                                                                          |                                                                                            
ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATA  >  NC_000913/4389876‑4390058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  >  NC_000913/4389873‑4390059
                                                                                             |                                                                                             
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGG                                                                                               >  SRR4302542.5304469/1‑94 (MQ=60)
 GTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGC                                                                                              >  SRR4302542.5106695/1‑94 (MQ=60)
  TATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCC                                                                                             >  SRR4302542.5387219/1‑94 (MQ=60)
   ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCT                                                                                            >  SRR4302542.6427347/1‑94 (MQ=60)
   ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCT                                                                                            <  SRR4302542.3399844/94‑1 (MQ=60)
   ATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCT                                                                                            <  SRR4302542.3399843/94‑1 (MQ=60)
    TAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTT                                                                                           <  SRR4302542.1943174/94‑1 (MQ=60)
     AATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTG                                                                                          >  SRR4302542.5325787/1‑94 (MQ=60)
     AATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTG                                                                                          >  SRR4302542.1043803/1‑94 (MQ=60)
     AATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                                          <  SRR4302542.4663384/94‑1 (MQ=60)
      ATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGC                                                                                         >  SRR4302542.6880338/1‑94 (MQ=60)
         CGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAA                                                                                      >  SRR4302542.6498296/1‑94 (MQ=60)
         CGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAA                                                                                      <  SRR4302542.3201345/94‑1 (MQ=60)
          GCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAG                                                                                     <  SRR4302542.3350874/94‑1 (MQ=60)
          GCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAG                                                                                     <  SRR4302542.7406102/94‑1 (MQ=60)
           CCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGG                                                                                    >  SRR4302542.328845/1‑94 (MQ=60)
           CCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGG                                                                                    <  SRR4302542.6284760/94‑1 (MQ=60)
           CCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGG                                                                                    >  SRR4302542.306652/1‑94 (MQ=60)
           CCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG                                                                                    >  SRR4302542.5291385/1‑94 (MQ=60)
            CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGT                                                                                   >  SRR4302542.7447007/1‑94 (MQ=60)
            CTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGT                                                                                   <  SRR4302542.3630282/94‑1 (MQ=60)
             TCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTC                                                                                  >  SRR4302542.2994397/1‑94 (MQ=60)
              CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCG                                                                                 >  SRR4302542.5534861/1‑94 (MQ=60)
              CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCG                                                                                 >  SRR4302542.6091823/1‑94 (MQ=60)
              CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCG                                                                                 >  SRR4302542.2455249/1‑94 (MQ=60)
               CCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGG                                                                                >  SRR4302542.951144/1‑94 (MQ=60)
                CGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGG                                                                               >  SRR4302542.5367703/1‑94 (MQ=60)
                 gctattcccgcgtactacttAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGG                                                                              >  SRR4302542.4908996/21‑94 (MQ=60)
                 GTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGG                                                                              >  SRR4302542.1386348/1‑94 (MQ=60)
                 GTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGG                                                                              >  SRR4302542.3973855/1‑94 (MQ=60)
                  TAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGT                                                                             <  SRR4302542.1125121/94‑1 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            <  SRR4302542.3002697/94‑1 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            <  SRR4302542.4546490/94‑1 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTC                                                                            >  SRR4302542.2668057/1‑94 (MQ=60)
                   AACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTC                                                                            >  SRR4302542.6786759/1‑94 (MQ=60)
                    ACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCG                                                                           <  SRR4302542.3841137/94‑1 (MQ=60)
                     CGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGC                                                                          >  SRR4302542.6628011/1‑94 (MQ=60)
                     CGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGC                                                                          >  SRR4302542.2414865/1‑94 (MQ=60)
                        CGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAG                                                                       >  SRR4302542.183599/1‑94 (MQ=60)
                        CGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAG                                                                       <  SRR4302542.3943876/94‑1 (MQ=60)
                        CGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAG                                                                       >  SRR4302542.4377806/1‑94 (MQ=60)
                         GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGT                                                                      <  SRR4302542.1321636/94‑1 (MQ=60)
                          CAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTT                                                                     >  SRR4302542.4991630/1‑94 (MQ=60)
                           AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTC                                                                    <  SRR4302542.7594060/94‑1 (MQ=60)
                           AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTC                                                                    >  SRR4302542.4967259/1‑94 (MQ=60)
                           AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTC                                                                    <  SRR4302542.2216151/94‑1 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302542.1420084/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   <  SRR4302542.6463466/94‑1 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302542.323967/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302542.5048784/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302542.6134549/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   >  SRR4302542.3960322/1‑94 (MQ=60)
                            GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCG                                                                   <  SRR4302542.357712/94‑1 (MQ=60)
                             AAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGA                                                                  >  SRR4302542.3195549/1‑94 (MQ=60)
                              AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAG                                                                 <  SRR4302542.7035148/94‑1 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             <  SRR4302542.3250178/94‑1 (MQ=60)
                                  CGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTC                                                             >  SRR4302542.2974158/1‑94 (MQ=60)
                                   gaaaagtacgaaaacaaacagacctagcACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            <  SRR4302542.7231105/66‑1 (MQ=0)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            >  SRR4302542.675435/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            >  SRR4302542.2850666/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            >  SRR4302542.3211522/1‑94 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            <  SRR4302542.4188396/94‑1 (MQ=60)
                                   GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCG                                                            <  SRR4302542.1931727/94‑1 (MQ=60)
                                    AAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGT                                                           >  SRR4302542.1512220/1‑94 (MQ=60)
                                    AAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGT                                                           >  SRR4302542.6769181/1‑94 (MQ=60)
                                     AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTT                                                          >  SRR4302542.7569553/1‑94 (MQ=60)
                                      AATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTT                                                         <  SRR4302542.2693225/94‑1 (MQ=60)
                                      AATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTT                                                         >  SRR4302542.4003903/1‑94 (MQ=60)
                                       ATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTC                                                        >  SRR4302542.6005808/1‑94 (MQ=60)
                                        TTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCC                                                       >  SRR4302542.6075846/1‑94 (MQ=60)
                                         TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCC                                                      >  SRR4302542.1892744/1‑94 (MQ=60)
                                          ACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCG                                                     >  SRR4302542.1588390/1‑94 (MQ=58)
                                           CGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGC                                                    >  SRR4302542.3052568/1‑94 (MQ=55)
                                            GAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCT                                                   >  SRR4302542.2052928/1‑94 (MQ=53)
                                            GAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCT                                                   >  SRR4302542.4315505/1‑94 (MQ=55)
                                             AAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTC                                                  <  SRR4302542.5344515/94‑1 (MQ=50)
                                               AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCA                                                <  SRR4302542.2509519/94‑1 (MQ=45)
                                               AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCA                                                >  SRR4302542.1678712/1‑94 (MQ=45)
                                                  AAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAA                                             >  SRR4302542.7549090/1‑94 (MQ=38)
                                                  AAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAA                                             >  SRR4302542.6467809/1‑94 (MQ=38)
                                                  AAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAA                                             >  SRR4302542.7549088/1‑94 (MQ=38)
                                                  AAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAA                                             >  SRR4302542.5827375/1‑94 (MQ=38)
                                                   AAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT                                            <  SRR4302542.2922697/94‑1 (MQ=35)
                                                   AAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT                                            <  SRR4302542.3696181/94‑1 (MQ=37)
                                                    AATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATT                                           >  SRR4302542.39310/1‑94 (MQ=33)
                                                      TTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTG                                         >  SRR4302542.7465884/1‑94 (MQ=29)
                                                       TAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGA                                        <  SRR4302542.6842583/94‑1 (MQ=25)
                                                        AAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAA                                       >  SRR4302542.7183370/1‑94 (MQ=23)
                                                        AAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAA                                       >  SRR4302542.3450879/1‑94 (MQ=24)
                                                         AGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAA                                      >  SRR4302542.3763404/1‑94 (MQ=20)
                                                          GTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAA                                     <  SRR4302542.2911695/94‑1 (MQ=20)
                                                          GTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAA                                     <  SRR4302542.766386/94‑1 (MQ=20)
                                                           TAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAG                                    <  SRR4302542.105781/94‑1 (MQ=20)
                                                             GTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTG                                  >  SRR4302542.6751865/1‑94 (MQ=14)
                                                             GTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTG                                  <  SRR4302542.3261637/94‑1 (MQ=20)
                                                             GTACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTG                                  <  SRR4302542.1871293/94‑1 (MQ=20)
                                                             GTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTGAAAAGAG                                  >  SRR4302542.7513894/1‑94 (MQ=10)
                                                               ACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCT                                >  SRR4302542.4067075/1‑94 (MQ=20)
                                                               ACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCT                                <  SRR4302542.4976846/94‑1 (MQ=20)
                                                               ACGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCT                                <  SRR4302542.5149323/94‑1 (MQ=20)
                                                               ACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCT                                >  SRR4302542.3414384/1‑94 (MQ=21)
                                                                CGCGGGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTG                               <  SRR4302542.3471037/94‑1 (MQ=20)
                                                                 GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTTCCGCTCCAAAATTTGAAAAGTCCTGC                              >  SRR4302542.5364512/1‑94 (MQ=4)
                                                                  CGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCA                             <  SRR4302542.5797460/94‑1 (MQ=24)
                                                                   GGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAA                            >  SRR4302542.3458849/1‑94 (MQ=26)
                                                                    GGAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAA                           <  SRR4302542.612700/94‑1 (MQ=28)
                                                                     GAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG                          <  SRR4302542.4940612/94‑1 (MQ=30)
                                                                     GAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG                          <  SRR4302542.4365602/94‑1 (MQ=30)
                                                                     GAATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGAAAAG                          >  SRR4302542.1069583/1‑94 (MQ=14)
                                                                      AATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTGCTGCAAAGA                         >  SRR4302542.7026098/1‑94 (MQ=26)
                                                                      AATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC                         >  SRR4302542.893081/1‑94 (MQ=33)
                                                                       ATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCA                        >  SRR4302542.2051428/1‑94 (MQ=35)
                                                                       ATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCA                        <  SRR4302542.3582553/94‑1 (MQ=35)
                                                                       ATAGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCA                        >  SRR4302542.5263770/1‑94 (MQ=35)
                                                                         AGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACA                      <  SRR4302542.5933711/94‑1 (MQ=40)
                                                                         AGCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACA                      <  SRR4302542.5775894/94‑1 (MQ=40)
                                                                         AGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACA                      >  SRR4302542.6148382/1‑94 (MQ=42)
                                                                          GCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTGCTGCAAAGCACAG                     >  SRR4302542.2663253/1‑94 (MQ=39)
                                                                          GCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAG                     <  SRR4302542.1154540/94‑1 (MQ=43)
                                                                          GCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAG                     <  SRR4302542.5116484/94‑1 (MQ=43)
                                                                          GCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAG                     >  SRR4302542.5957132/1‑94 (MQ=43)
                                                                          GCTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGAAAAGCACAG                     >  SRR4302542.5247765/1‑94 (MQ=29)
                                                                           CTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTATTGCAAAGCCCAGA                    >  SRR4302542.1309463/1‑94 (MQ=0)
                                                                           CTCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGA                    >  SRR4302542.1885354/1‑94 (MQ=45)
                                                                            TCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGAC                   >  SRR4302542.5400979/1‑94 (MQ=45)
                                                                            TCAGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGAGCTGCAAAGCACAGAC                   >  SRR4302542.5775031/1‑94 (MQ=34)
                                                                              AGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGTTGCAAAGCACAGACCA                 >  SRR4302542.1775162/1‑94 (MQ=39)
                                                                              AGTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCA                 <  SRR4302542.1705917/94‑1 (MQ=45)
                                                                               GTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCAC                >  SRR4302542.4940810/1‑94 (MQ=45)
                                                                               GTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCAC                <  SRR4302542.7261778/94‑1 (MQ=45)
                                                                               GTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCAC                <  SRR4302542.4853226/94‑1 (MQ=45)
                                                                                TTGGTAGAGCACGACCTTGCCAAGGTCGGGGCCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAACAGCTGCAAAGTACAGACCACC               >  SRR4302542.5777208/1‑94 (MQ=18)
                                                                                 TGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCC              >  SRR4302542.4205677/1‑94 (MQ=45)
                                                                                  GGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCA             <  SRR4302542.493021/94‑1 (MQ=47)
                                                                                       AGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTtaaaactgttgaaaagccacaacgacccaagggg        >  SRR4302542.6751112/1‑60 (MQ=0)
                                                                                       AGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGG        >  SRR4302542.4644243/1‑94 (MQ=45)
                                                                                        GCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGG       <  SRR4302542.2160215/94‑1 (MQ=45)
                                                                                        GCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGG       >  SRR4302542.5625301/1‑94 (MQ=45)
                                                                                        GCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGG       <  SRR4302542.6292540/94‑1 (MQ=47)
                                                                                         CACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGA      >  SRR4302542.597688/1‑94 (MQ=45)
                                                                                          ACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAA     >  SRR4302542.7478105/1‑94 (MQ=46)
                                                                                           CGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAAT    <  SRR4302542.888211/94‑1 (MQ=46)
                                                                                           CGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAAT    <  SRR4302542.2049135/94‑1 (MQ=46)
                                                                                            GGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATA   <  SRR4302542.7261863/94‑1 (MQ=46)
                                                                                            GGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAAAGACCACCCAAGCGGGAATA   >  SRR4302542.2558331/1‑94 (MQ=44)
                                                                                             GCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  <  SRR4302542.419746/94‑1 (MQ=47)
                                                                                             GCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  <  SRR4302542.1598499/94‑1 (MQ=47)
                                                                                             ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  <  SRR4302542.1649420/94‑1 (MQ=47)
                                                                                             |                                                                                             
CGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAG  >  NC_000913/4389873‑4390059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑