Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,549,377 |
T→C |
V58A (GTG→GCG) |
uxuA → |
mannonate hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,549,377 | 0 | T | C | 89.2%
| 861.0
/ 74.4
| 325 | V58A (GTG→GCG) | uxuA | mannonate hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (23/12); new base C (127/163); total (150/175) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
Only 100 of 333 total aligned reads displayed.
TTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTC > NC_000913/4549287‑4549469
|
ttACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGgcgt < 2:2836417/93‑1 (MQ=255)
aCCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTgg > 1:5513918/1‑93 (MQ=255)
aCCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTgg < 2:778419/93‑1 (MQ=255)
ccGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGt > 2:1449808/1‑93 (MQ=255)
cgcgCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTc < 2:1788409/93‑1 (MQ=255)
cgcgCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTc < 1:4577353/93‑1 (MQ=255)
gcgcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCt > 2:5876267/1‑93 (MQ=255)
gcgcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCt < 1:3632801/93‑1 (MQ=255)
gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGt > 2:1643953/1‑93 (MQ=255)
gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGt < 2:3803658/93‑1 (MQ=255)
gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGt < 1:2094839/93‑1 (MQ=255)
cTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTc < 1:3753925/93‑1 (MQ=255)
cTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTc < 1:6633768/93‑1 (MQ=255)
tGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCg > 2:3696125/1‑93 (MQ=255)
gCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGCCTGTCGt > 1:1668890/1‑93 (MQ=255)
cACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTa < 2:5760206/93‑1 (MQ=255)
aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAg < 1:81708/93‑1 (MQ=255)
tatCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAg > 2:4738136/1‑93 (MQ=255)
tatCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAg < 2:1416981/93‑1 (MQ=255)
atCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGc < 1:6282898/93‑1 (MQ=255)
atCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGc > 1:1394052/1‑93 (MQ=255)
tCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCg < 1:4756930/93‑1 (MQ=255)
tCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCg > 1:5951980/1‑93 (MQ=255)
cccGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGt < 2:3182603/93‑1 (MQ=255)
gAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGcc > 1:7492747/1‑93 (MQ=255)
aaCGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCa > 1:7044597/1‑93 (MQ=255)
aCGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCaa < 1:1017153/93‑1 (MQ=255)
cGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAAt < 1:2012606/93‑1 (MQ=255)
ggCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAAtt > 1:143590/1‑93 (MQ=255)
ggCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAAtt < 1:3495775/93‑1 (MQ=255)
ggCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAAtt < 2:6120776/93‑1 (MQ=255)
cGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCa < 2:1910182/93‑1 (MQ=255)
gAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCAc > 2:2426658/1‑93 (MQ=255)
gAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCAc > 2:5298372/1‑93 (MQ=255)
aaGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACg > 1:254548/1‑93 (MQ=255)
aGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGa > 1:6121762/1‑93 (MQ=255)
aGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGa > 1:2809073/1‑93 (MQ=255)
gTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGaa > 1:4935177/1‑93 (MQ=255)
tATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAg < 1:7348317/93‑1 (MQ=255)
tATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAg < 2:5369331/93‑1 (MQ=255)
aTGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGa < 1:1214592/93‑1 (MQ=255)
aTGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGa < 1:1582453/93‑1 (MQ=255)
aTGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGa < 1:4811423/93‑1 (MQ=255)
ggTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGata < 1:5048231/93‑1 (MQ=255)
tCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATc > 2:415723/1‑93 (MQ=255)
cGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCaa > 2:553031/1‑93 (MQ=255)
tGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAAc < 2:6829812/93‑1 (MQ=255)
aaGAGATCCTCAAACGCAAGGCGATCATTTAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAAccc > 1:6206706/1‑93 (MQ=255)
agagATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCca > 2:2309235/1‑93 (MQ=255)
gagaTCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCcac > 1:3880020/1‑93 (MQ=255)
gagaTCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCcac < 2:834706/93‑1 (MQ=255)
agaTCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCcaca < 2:5223937/93‑1 (MQ=255)
gaTCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCacac > 1:6366350/1‑93 (MQ=255)
aTCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACt < 1:3296877/93‑1 (MQ=255)
tCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTg < 2:6506875/93‑1 (MQ=255)
tCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTg < 2:2383505/93‑1 (MQ=255)
tCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTg > 2:1041287/1‑93 (MQ=255)
tCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTg > 1:7414076/1‑93 (MQ=255)
ccTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg > 1:3936721/1‑93 (MQ=255)
ccTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg < 2:7266542/93‑1 (MQ=255)
cTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTTGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGc > 1:341684/1‑93 (MQ=255)
tCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCa > 2:1596069/1‑93 (MQ=255)
cAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCaa < 1:5909421/93‑1 (MQ=255)
aaaCGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAAc > 2:4496168/1‑93 (MQ=255)
gCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATg > 2:5616668/1‑93 (MQ=255)
gCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATg > 1:2357171/1‑93 (MQ=255)
aGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGc > 1:943239/1‑93 (MQ=255)
ggCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCa < 2:2160540/93‑1 (MQ=255)
ggCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCa < 1:4253115/93‑1 (MQ=255)
ggCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCa < 1:4459475/93‑1 (MQ=255)
gCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAg < 2:3343361/93‑1 (MQ=255)
gCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAg < 2:7378582/93‑1 (MQ=255)
gCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCAACACTGGCAACTATGAGCAg < 1:5623353/93‑1 (MQ=255)
cGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGt < 2:374675/93‑1 (MQ=255)
cGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGt > 2:136210/1‑93 (MQ=255)
cGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGt < 1:6827956/93‑1 (MQ=255)
cGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGt > 2:7128594/1‑93 (MQ=255)
gATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTg > 1:1841118/1‑93 (MQ=255)
aTCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg < 2:4295641/93‑1 (MQ=255)
aTCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg > 1:6928016/1‑93 (MQ=255)
aTCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg > 2:2088138/1‑93 (MQ=255)
tCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGa < 2:6391187/93‑1 (MQ=255)
tCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGa > 2:5005313/1‑93 (MQ=255)
aTTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATc > 2:6712187/1‑93 (MQ=255)
tGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGc < 2:872152/93‑1 (MQ=255)
gAAGACGCAGGCCTGGCGTAGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCt < 2:3582558/93‑1 (MQ=255)
aGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTaa < 2:1222466/93‑1 (MQ=255)
aGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTaa < 2:1106994/93‑1 (MQ=255)
gCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTAt > 2:6587317/1‑93 (MQ=255)
cAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATc < 2:4012805/93‑1 (MQ=255)
aGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATca > 2:3039761/1‑93 (MQ=255)
ggCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcag > 2:4680588/1‑93 (MQ=255)
ggCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcag > 1:5268691/1‑93 (MQ=255)
ggCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcag < 1:4047250/93‑1 (MQ=255)
ggCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcag > 1:317872/1‑93 (MQ=255)
ccTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcagca < 1:5679544/93‑1 (MQ=255)
cTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcagcag > 2:2552878/1‑93 (MQ=255)
tGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGa > 1:435546/1‑93 (MQ=255)
tGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGa < 1:1287710/93‑1 (MQ=255)
tgtgGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActc > 2:7163115/1‑93 (MQ=255)
|
TTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTC > NC_000913/4549287‑4549469
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT > NC_000913/4549285‑4549470
|
GGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCG > SRR4302542.4171508/1‑94 (MQ=60)
GTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGT > SRR4302542.2033296/1‑94 (MQ=60)
TTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTG < SRR4302542.6356161/94‑1 (MQ=60)
TACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGG > SRR4302542.5567503/1‑94 (MQ=60)
CCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTC < SRR4302542.4823168/94‑1 (MQ=60)
CGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCT < SRR4302542.4622134/94‑1 (MQ=60)
CGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCT > SRR4302542.594002/1‑94 (MQ=60)
GCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTG < SRR4302542.3666649/94‑1 (MQ=60)
GCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTG < SRR4302542.746036/94‑1 (MQ=60)
GCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTC < SRR4302542.1054719/94‑1 (MQ=60)
GCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTC < SRR4302542.2112910/94‑1 (MQ=60)
CTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCG < SRR4302542.3791064/94‑1 (MQ=60)
CTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCG < SRR4302542.6699163/94‑1 (MQ=60)
CTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCG > SRR4302542.4516418/1‑94 (MQ=60)
TGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGT > SRR4302542.7002109/1‑94 (MQ=60)
TGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGT > SRR4302542.1445994/1‑94 (MQ=60)
TGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGT < SRR4302542.4410823/94‑1 (MQ=60)
TGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGCCTGTCGT > SRR4302542.1683305/1‑94 (MQ=60)
TGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATAATTGAAGACGCAGGCCTGGTGTGGTCTGTCGT > SRR4302542.7002111/1‑94 (MQ=60)
GCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTA < SRR4302542.6488721/94‑1 (MQ=60)
GCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTA < SRR4302542.2492059/94‑1 (MQ=60)
CACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAG > SRR4302542.1617016/1‑94 (MQ=60)
ACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGA < SRR4302542.82391/94‑1 (MQ=60)
CCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAA > SRR4302542.6178243/1‑94 (MQ=60)
TATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGC > SRR4302542.1406085/1‑94 (MQ=60)
ATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCG < SRR4302542.6344813/94‑1 (MQ=60)
ATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCG > SRR4302542.6009626/1‑94 (MQ=60)
ATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCG > SRR4302542.5984592/1‑94 (MQ=60)
TCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGT < SRR4302542.3232526/94‑1 (MQ=60)
TCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGT < SRR4302542.4803323/94‑1 (MQ=60)
CCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTG < SRR4302542.4335055/94‑1 (MQ=60)
CCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGC < SRR4302542.4631422/94‑1 (MQ=60)
CGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCC > SRR4302542.7566291/1‑94 (MQ=60)
GAGCGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCA < SRR4302542.1568646/94‑1 (MQ=60)
GAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCA > SRR4302542.7113784/1‑94 (MQ=60)
GAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCA < SRR4302542.852583/94‑1 (MQ=60)
GAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCA > SRR4302542.7511732/1‑94 (MQ=60)
GAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCA > SRR4302542.7113783/1‑94 (MQ=60)
AACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAA > SRR4302542.2558286/1‑94 (MQ=60)
ACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAAT < SRR4302542.1025914/94‑1 (MQ=60)
CGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATT > SRR4302542.144788/1‑94 (MQ=60)
CGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATT < SRR4302542.2029985/94‑1 (MQ=60)
GGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTC < SRR4302542.3528469/94‑1 (MQ=60)
GGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTC > SRR4302542.1680576/1‑94 (MQ=60)
GGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTC < SRR4302542.4423226/94‑1 (MQ=60)
GCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCA < SRR4302542.1350062/94‑1 (MQ=60)
GCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCA < SRR4302542.142300/94‑1 (MQ=60)
GAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACG > SRR4302542.256717/1‑94 (MQ=60)
GAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACG < SRR4302542.7350534/94‑1 (MQ=60)
GAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACG < SRR4302542.6014652/94‑1 (MQ=60)
AAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGA > SRR4302542.428944/1‑94 (MQ=60)
AAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGA > SRR4302542.6180992/1‑94 (MQ=60)
AAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGA > SRR4302542.2836117/1‑94 (MQ=60)
AGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAA < SRR4302542.3561050/94‑1 (MQ=60)
AGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAA < SRR4302542.3652896/94‑1 (MQ=60)
AGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAA > SRR4302542.4983148/1‑94 (MQ=60)
GTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAG < SRR4302542.984776/94‑1 (MQ=60)
TATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGA > SRR4302542.6201643/1‑94 (MQ=60)
TATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGA < SRR4302542.7420285/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT < SRR4302542.1225046/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT < SRR4302542.4987960/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT < SRR4302542.1596113/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT < SRR4302542.4713355/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT > SRR4302542.6617107/1‑94 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT < SRR4302542.4858287/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT < SRR4302542.3449677/94‑1 (MQ=60)
ATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGAT > SRR4302542.6263232/1‑94 (MQ=60)
TGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATA > SRR4302542.7219655/1‑94 (MQ=60)
TGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATA < SRR4302542.2632899/94‑1 (MQ=60)
TGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATA < SRR4302542.5640850/94‑1 (MQ=60)
TGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATA < SRR4302542.639403/94‑1 (MQ=60)
GGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATAT > SRR4302542.5264061/1‑94 (MQ=60)
GGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATAT < SRR4302542.5097239/94‑1 (MQ=60)
GGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATAT > SRR4302542.1292164/1‑94 (MQ=60)
GGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATAT < SRR4302542.4853930/94‑1 (MQ=60)
CGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAA < SRR4302542.5452561/94‑1 (MQ=60)
CGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAA > SRR4302542.5682765/1‑94 (MQ=60)
GTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAA > SRR4302542.4098348/1‑94 (MQ=60)
GTTGAAGAGATACTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAA > SRR4302542.1915317/1‑94 (MQ=60)
TTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAAC > SRR4302542.4146435/1‑94 (MQ=60)
TGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACC > SRR4302542.107338/1‑94 (MQ=60)
TGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACC < SRR4302542.2585207/94‑1 (MQ=60)
TGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACC < SRR4302542.3913786/94‑1 (MQ=60)
GAAGAGATCCTCAAACGCAAGGCGATCATTTAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCC > SRR4302542.6267758/1‑94 (MQ=60)
AGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCAC > SRR4302542.3918347/1‑94 (MQ=60)
AGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCAC > SRR4302542.6248394/1‑94 (MQ=60)
GAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACA > SRR4302542.5632351/1‑94 (MQ=60)
GAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACA < SRR4302542.4608015/94‑1 (MQ=60)
AGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACAC > SRR4302542.6429047/1‑94 (MQ=60)
GATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACT > SRR4302542.3509972/1‑94 (MQ=60)
ATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTG < SRR4302542.3327982/94‑1 (MQ=60)
ATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTG > SRR4302542.7486627/1‑94 (MQ=60)
TCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGG > SRR4302542.3975563/1‑94 (MQ=60)
CCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTTGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGC > SRR4302542.344647/1‑94 (MQ=60)
CTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCA > SRR4302542.759601/1‑94 (MQ=60)
CAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAAC > SRR4302542.1799056/1‑94 (MQ=60)
CAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAAC > SRR4302542.5514622/1‑94 (MQ=60)
CAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAAC < SRR4302542.5966693/94‑1 (MQ=60)
AAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACT < SRR4302542.489915/94‑1 (MQ=60)
AAACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACT > SRR4302542.7494414/1‑94 (MQ=60)
AACGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTA > SRR4302542.795655/1‑94 (MQ=60)
CGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATG < SRR4302542.6724017/94‑1 (MQ=60)
CGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATG > SRR4302542.4379323/1‑94 (MQ=60)
CGCAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATG > SRR4302542.2377433/1‑94 (MQ=60)
CAAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAG > SRR4302542.3797304/1‑94 (MQ=60)
AAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGC > SRR4302542.5973557/1‑94 (MQ=60)
AAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGC < SRR4302542.3967533/94‑1 (MQ=60)
AAGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGC > SRR4302542.951356/1‑94 (MQ=60)
AGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCA > SRR4302542.6851948/1‑94 (MQ=60)
AGGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCA > SRR4302542.5918247/1‑94 (MQ=60)
GGCGATCATTGAAGCCGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.7514340/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.2127328/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.2240892/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.4503221/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.4295011/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.1277507/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG < SRR4302542.4056661/94‑1 (MQ=60)
GGCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAG > SRR4302542.4585472/1‑94 (MQ=60)
GCGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCAACACTGGCAACTATGAGCAGT < SRR4302542.5677969/94‑1 (MQ=60)
CGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTG < SRR4302542.2979539/94‑1 (MQ=60)
CGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTG < SRR4302542.586278/94‑1 (MQ=60)
CGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTG > SRR4302542.1684711/1‑94 (MQ=60)
CGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTG > SRR4302542.1857054/1‑94 (MQ=60)
CGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTG < SRR4302542.5044341/94‑1 (MQ=60)
CGATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTG < SRR4302542.6895064/94‑1 (MQ=60)
GATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCTTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGG > SRR4302542.3108309/1‑94 (MQ=60)
GATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGG < SRR4302542.5704963/94‑1 (MQ=60)
GATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGG > SRR4302542.6996039/1‑94 (MQ=60)
GATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGG > SRR4302542.4037896/1‑94 (MQ=60)
ATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGA < SRR4302542.4946896/94‑1 (MQ=60)
ATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGA > SRR4302542.97263/1‑94 (MQ=60)
ATCATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGA > SRR4302542.1428179/1‑94 (MQ=60)
CATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATC > SRR4302542.853020/1‑94 (MQ=60)
ATTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGAGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCG > SRR4302542.6287673/1‑94 (MQ=60)
TTGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGC > SRR4302542.7454547/1‑94 (MQ=60)
TGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCT > SRR4302542.697623/1‑94 (MQ=60)
TGAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCT < SRR4302542.998934/94‑1 (MQ=60)
GAAGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTA > SRR4302542.3275126/1‑94 (MQ=60)
AGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAAC < SRR4302542.5321891/94‑1 (MQ=60)
AGACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAAC > SRR4302542.3822368/1‑94 (MQ=60)
GACGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACT < SRR4302542.3416374/94‑1 (MQ=60)
CGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTAT < SRR4302542.1367394/94‑1 (MQ=60)
CGCAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTAT < SRR4302542.1861355/94‑1 (MQ=60)
CAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCA > SRR4302542.2088428/1‑94 (MQ=60)
CAGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCA < SRR4302542.4943401/94‑1 (MQ=60)
AGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAG < SRR4302542.6691394/94‑1 (MQ=60)
AGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAG < SRR4302542.5202671/94‑1 (MQ=60)
AGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAG > SRR4302542.320632/1‑94 (MQ=60)
AGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAG > SRR4302542.5319891/1‑94 (MQ=60)
AGGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAG > SRR4302542.3462556/1‑94 (MQ=60)
GGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGC > SRR4302542.3946629/1‑94 (MQ=60)
GGCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGC < SRR4302542.4087175/94‑1 (MQ=60)
GCCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCA < SRR4302542.374218/94‑1 (MQ=60)
CCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG > SRR4302542.3787592/1‑94 (MQ=60)
CCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG < SRR4302542.2964672/94‑1 (MQ=60)
CCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG < SRR4302542.1511921/94‑1 (MQ=60)
CCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG < SRR4302542.5734696/94‑1 (MQ=60)
CCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG < SRR4302542.1816590/94‑1 (MQ=60)
CCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG < SRR4302542.3344037/94‑1 (MQ=60)
CCTGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAG > SRR4302542.233419/1‑94 (MQ=60)
CTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGA > SRR4302542.6951543/1‑94 (MQ=60)
CTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGA > SRR4302542.439319/1‑94 (MQ=60)
TGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGAC < SRR4302542.1298799/94‑1 (MQ=60)
TGGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGAC > SRR4302542.6510043/1‑94 (MQ=60)
GGCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACT < SRR4302542.202835/94‑1 (MQ=60)
GCGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTC < SRR4302542.574833/94‑1 (MQ=60)
TGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT < SRR4302542.6338883/94‑1 (MQ=60)
TGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT > SRR4302542.64769/1‑94 (MQ=60)
CGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT > SRR4302542.5634121/1‑94 (MQ=60)
CGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT > SRR4302542.3901627/1‑94 (MQ=60)
CGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT < SRR4302542.5113034/94‑1 (MQ=60)
CGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT < SRR4302542.4171696/94‑1 (MQ=60)
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GGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCT > NC_000913/4549285‑4549470
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
