Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,568,665 |
A→G |
L160P (CTC→CCC) |
yjiR ← |
putative regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,568,665 | 0 | A | G | 87.6%
| 722.8
/ 86.3
| 298 | L160P (CTC→CCC) | yjiR | putative regulator |
| Reads supporting (aligned to +/- strand): ref base A (18/19); new base G (115/146); total (133/165) |
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.33e-01 |
Only 100 of 299 total aligned reads displayed.
GTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACC > NC_000913/4568573‑4568754
|
ttACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGc < 2:4352376/93‑1 (MQ=255)
ttACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCCCTGTCGGGc > 1:4989935/1‑93 (MQ=255)
tACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCa > 1:1883858/1‑93 (MQ=255)
acccacTGCCATAAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCAt < 1:4942812/90‑1 (MQ=255)
acacacTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCAt > 1:4653758/1‑93 (MQ=255)
cacacTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATc > 1:384812/1‑93 (MQ=255)
acacTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCa < 2:6935951/93‑1 (MQ=255)
cacTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAg < 2:5555696/93‑1 (MQ=255)
cacTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAg > 2:1819902/1‑93 (MQ=255)
acTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAgg < 2:2140427/93‑1 (MQ=255)
acTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAgg < 2:6857380/93‑1 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGc < 2:6100646/93‑1 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGc < 2:1680702/93‑1 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGc < 2:6746317/93‑1 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGc > 2:3235101/1‑93 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGc > 1:2577030/1‑93 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGc > 1:6540549/1‑93 (MQ=255)
cTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCAAGCATCAGGc < 1:6035932/93‑1 (MQ=255)
tGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCg > 1:6319580/1‑93 (MQ=255)
tGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCg > 2:5509538/1‑93 (MQ=255)
tGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCg < 1:5655537/93‑1 (MQ=255)
tGCCATTAACGCCAGCGACATCGAATTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCg > 2:7381281/1‑93 (MQ=255)
gCCATTACCGCCAGCGACATCGGTTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCgg < 1:6189397/93‑1 (MQ=255)
gCCAATAACGCCAGAAAACTCCGGTTATGGCAGCCGGTTGTGATGTTGATTTAAATGGCCGTGACCTCCGAGCCGCTGTCGGGCATCAGGCgg < 1:3332537/93‑1 (MQ=255)
ttAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCaa > 1:1095689/1‑93 (MQ=255)
ttAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCaa > 2:2396403/1‑93 (MQ=255)
ttAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGGGACCACCGAGCCGCTGTCGGGCATCAGGCGGGGaa > 1:5978658/1‑93 (MQ=255)
tAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAAt < 1:214823/93‑1 (MQ=255)
tAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAAt > 1:5519019/1‑93 (MQ=255)
aCGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCt < 1:3058811/93‑1 (MQ=255)
ccAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGCCCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGct < 1:6409641/93‑1 (MQ=255)
ccAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGct > 2:4047069/1‑93 (MQ=255)
ccAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGct < 2:1501072/93‑1 (MQ=255)
gCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCtctc < 2:5916801/93‑1 (MQ=255)
gCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCtctc > 2:5415538/1‑93 (MQ=255)
cGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCg < 2:6579598/93‑1 (MQ=255)
gACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGc > 1:7019672/1‑93 (MQ=255)
cATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCaa > 2:6670436/1‑93 (MQ=255)
tCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATa > 2:3718482/1‑93 (MQ=255)
tCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATa > 2:4768198/1‑93 (MQ=255)
cGAGTTAGGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATAc < 1:4102300/93‑1 (MQ=255)
gAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACt < 2:6305338/93‑1 (MQ=255)
aGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTc < 1:945828/93‑1 (MQ=255)
ttATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGc < 2:2069053/93‑1 (MQ=255)
ttATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGc < 1:5037347/93‑1 (MQ=255)
ttATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGc > 2:5268267/1‑93 (MQ=255)
tGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGCGCCGCTGGCGGGCATCAGGCGGACCATCTGCTCCCGCAATACTCGATGa > 2:294912/1‑93 (MQ=255)
tGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGa > 2:783052/1‑93 (MQ=255)
tGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGa > 2:3491164/1‑93 (MQ=255)
tGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGa < 2:6162931/93‑1 (MQ=255)
cAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCg < 2:337125/93‑1 (MQ=255)
ccGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCt > 2:5687020/1‑93 (MQ=255)
gCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTaa > 2:4467127/1‑93 (MQ=255)
tGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACa > 1:1735527/1‑93 (MQ=255)
tGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACa > 2:3060242/1‑93 (MQ=255)
ggTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACaa > 2:5355070/1‑93 (MQ=255)
atgatgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCa < 1:713415/93‑1 (MQ=255)
atgatgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCa > 1:1205476/1‑93 (MQ=255)
ataatgatgTAATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCa < 1:2416346/90‑1 (MQ=255)
tgatgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCAt > 2:4638575/1‑93 (MQ=255)
gatgatgTCATCGGCGGTGCCCCCGGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATa < 1:5735103/93‑1 (MQ=255)
gatgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATa > 2:5149318/1‑93 (MQ=255)
atgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCCATACTCGCTGACCGGCTAACAAGTCATaa > 2:2679760/1‑93 (MQ=255)
atgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATaa < 1:5829189/93‑1 (MQ=255)
tgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAc < 2:921506/93‑1 (MQ=255)
tgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAc < 2:4967914/93‑1 (MQ=255)
tgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAc > 1:4281981/1‑93 (MQ=255)
tgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAc < 2:227223/93‑1 (MQ=255)
tgatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAc > 1:1448338/1‑93 (MQ=255)
gatgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAcc < 1:843521/93‑1 (MQ=255)
tgTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCga < 2:3278108/93‑1 (MQ=255)
tCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCgaga < 2:5792072/93‑1 (MQ=255)
tCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCgaga > 1:3012214/1‑93 (MQ=255)
cATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGaa < 2:1636163/93‑1 (MQ=255)
aTCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAAc < 1:1645940/93‑1 (MQ=255)
tCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACg < 1:7164091/93‑1 (MQ=255)
tCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAAGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACg > 1:4528847/1‑93 (MQ=255)
gggggTGACCCCCGAGCCGCTGTGGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGt < 1:7491529/90‑1 (MQ=255)
gcggTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGtt < 2:7132835/93‑1 (MQ=255)
gcggTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGtt > 2:3808216/1‑93 (MQ=255)
ggTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTg > 1:5569214/1‑93 (MQ=255)
tGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCa < 1:1013847/93‑1 (MQ=255)
tGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCa < 2:6410583/93‑1 (MQ=255)
ccaccGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGAt < 1:3583964/93‑1 (MQ=255)
ccggAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTa < 1:517564/90‑1 (MQ=255)
accGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTa > 2:6995920/1‑93 (MQ=255)
accGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTa < 2:194664/93‑1 (MQ=255)
cggAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAt < 1:6661919/91‑1 (MQ=255)
cGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtg < 2:4212567/93‑1 (MQ=255)
gAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgc < 1:2044955/93‑1 (MQ=255)
gAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgc < 2:1236653/93‑1 (MQ=255)
gAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgc > 1:2312548/1‑93 (MQ=255)
gAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgc > 1:133395/1‑93 (MQ=255)
aGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgct < 1:6134511/93‑1 (MQ=255)
gCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgctg < 1:6505139/93‑1 (MQ=255)
ccGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgctgc < 2:3869474/93‑1 (MQ=255)
ccGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAtgctgc > 1:5409819/1‑93 (MQ=255)
gCTGTCGGGCATCAGGCGGGCAATCTGCTCTCACAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGcac > 1:50975/1‑93 (MQ=255)
tGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGcacca < 2:2449041/93‑1 (MQ=255)
tCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCaccacc > 1:3965109/1‑93 (MQ=255)
|
GTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACC > NC_000913/4568573‑4568754
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCGGC > NC_000913/4568572‑4568758
|
GGTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGG > SRR4302542.1036840/1‑94 (MQ=60)
GGTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGG > SRR4302542.4134890/1‑94 (MQ=60)
GGTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGA > SRR4302542.3822923/1‑94 (MQ=60)
TTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCCCTGTCGGGC > SRR4302542.5038358/1‑94 (MQ=60)
TTCCACACTGCCATTACCCCCAGCGACATCGATTTATGGCAGCCGCTGGTGATGATAATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGAGCA < SRR4302542.5847450/94‑1 (MQ=60)
TTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCA > SRR4302542.1900167/1‑94 (MQ=60)
TACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCAT > SRR4302542.4699255/1‑94 (MQ=60)
TACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCAT > SRR4302542.5723749/1‑94 (MQ=60)
ACCCACTGCCATAAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATC < SRR4302542.4990840/94‑1 (MQ=60)
ACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATC > SRR4302542.388152/1‑94 (MQ=60)
CACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCA > SRR4302542.5808631/1‑94 (MQ=60)
ACACTGCCATTAACGCCAGCGACATCGATTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAG < SRR4302542.1766103/94‑1 (MQ=60)
CACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGG < SRR4302542.5347099/94‑1 (MQ=60)
CACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGG > SRR4302542.6800805/1‑94 (MQ=60)
CACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGCGACCACCGAGCCGCTGTCGGGCCTCAGG > SRR4302542.557040/1‑94 (MQ=60)
ACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGC > SRR4302542.6104266/1‑94 (MQ=60)
ACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGC > SRR4302542.2602016/1‑94 (MQ=60)
ACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGC > SRR4302542.6605036/1‑94 (MQ=60)
ACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGC > SRR4302542.832422/1‑94 (MQ=60)
CTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCG > SRR4302542.6495292/1‑94 (MQ=60)
CTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCG < SRR4302542.407676/94‑1 (MQ=60)
CTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCG > SRR4302542.6068707/1‑94 (MQ=60)
CTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCG > SRR4302542.6381865/1‑94 (MQ=60)
CTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCG > SRR4302542.4715795/1‑94 (MQ=60)
CTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCAAGCATCAGGCG < SRR4302542.6094364/94‑1 (MQ=60)
CTCCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGAGCATCAGGCG < SRR4302542.7167730/94‑1 (MQ=60)
TGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGG < SRR4302542.5710440/94‑1 (MQ=60)
TGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGG < SRR4302542.1149694/94‑1 (MQ=60)
GCCATTACCGCCAGCGACATCGGTTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGG < SRR4302542.6249566/94‑1 (MQ=60)
GCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGG < SRR4302542.434753/94‑1 (MQ=60)
GCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGG > SRR4302542.6453916/1‑94 (MQ=60)
GCCATTAACGCCAGCAACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCACCGGCGGTGACCCCCGAGCCGCTGTCGAGCATCAGGCGGG < SRR4302542.1414989/94‑1 (MQ=60)
CATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCA > SRR4302542.126949/1‑94 (MQ=60)
CATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCA > SRR4302542.1551951/1‑94 (MQ=60)
ATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAA > SRR4302542.1105075/1‑94 (MQ=60)
ATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGGGACCACCGAGCCGCTGTCGGGCATCAGGCGGGGAA > SRR4302542.6036525/1‑94 (MQ=60)
TTAACGCCGGCGACACCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGGGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAAT < SRR4302542.6014359/94‑1 (MQ=60)
TTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAAT > SRR4302542.5572653/1‑94 (MQ=60)
TTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAAT > SRR4302542.6575317/1‑94 (MQ=60)
TAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATC < SRR4302542.216671/94‑1 (MQ=60)
TAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATC < SRR4302542.7216055/94‑1 (MQ=60)
AACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCT < SRR4302542.7134717/94‑1 (MQ=60)
AACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCT < SRR4302542.1087542/94‑1 (MQ=60)
AACCCCAGCGACATCGAGTTATGGCCGCCGCTGGTGATGATGATTTCAACGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCT < SRR4302542.2066484/94‑1 (MQ=60)
ACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTG < SRR4302542.3087983/94‑1 (MQ=60)
CCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGCCCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTC < SRR4302542.6472804/94‑1 (MQ=60)
CCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTC > SRR4302542.2599016/1‑94 (MQ=60)
CAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCT < SRR4302542.5047056/94‑1 (MQ=60)
AGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGCCCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTC < SRR4302542.4364166/94‑1 (MQ=60)
GCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCG < SRR4302542.6699124/94‑1 (MQ=60)
CGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGC > SRR4302542.7088653/1‑94 (MQ=60)
ATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGGATCAGGCGGGCAATCTGCTCTCCCAATA > SRR4302542.2602029/1‑94 (MQ=60)
ATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGGGGGGAATCTGCTCTCGCAATA > SRR4302542.1932061/1‑94 (MQ=60)
ATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATA > SRR4302542.4995234/1‑94 (MQ=60)
ATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATA < SRR4302542.6121656/94‑1 (MQ=60)
ATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATA > SRR4302542.2255727/1‑94 (MQ=60)
CGAGTTAGGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACT < SRR4302542.4142744/94‑1 (MQ=60)
GATTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTC < SRR4302542.1687618/94‑1 (MQ=60)
AGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCG < SRR4302542.953964/94‑1 (MQ=60)
TTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCT < SRR4302542.5086252/94‑1 (MQ=60)
TTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCT < SRR4302542.7601323/94‑1 (MQ=60)
TTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCT < SRR4302542.5022296/94‑1 (MQ=60)
TATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTG < SRR4302542.2761477/94‑1 (MQ=60)
TAGGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTG < SRR4302542.6392108/94‑1 (MQ=60)
TGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGAC < SRR4302542.3642655/94‑1 (MQ=60)
TGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGAC < SRR4302542.1155278/94‑1 (MQ=60)
GGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACC < SRR4302542.459974/94‑1 (MQ=60)
GCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCG < SRR4302542.7266796/94‑1 (MQ=60)
CAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGG > SRR4302542.3554509/1‑94 (MQ=60)
AGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGC > SRR4302542.633238/1‑94 (MQ=60)
AGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGC > SRR4302542.5766777/1‑94 (MQ=60)
AGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGC > SRR4302542.5103153/1‑94 (MQ=60)
AGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGC > SRR4302542.3170538/1‑94 (MQ=60)
GCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCT < SRR4302542.1786966/94‑1 (MQ=60)
GCGGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAAC < SRR4302542.6589608/94‑1 (MQ=60)
CTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACA > SRR4302542.1750585/1‑94 (MQ=60)
TGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAA > SRR4302542.6354583/1‑94 (MQ=60)
TGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAA > SRR4302542.425182/1‑94 (MQ=60)
GTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGT < SRR4302542.4706217/94‑1 (MQ=60)
TGATGATGATGTCATCGGCGGTGACCACCGGGCCGCTGTCGGGCATCAGGCGGGTAATCTGATCTCGCAACACTCGCTGACCGGCTAACAAGAC > SRR4302542.457717/1‑94 (MQ=60)
GATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCA > SRR4302542.1215840/1‑94 (MQ=60)
ATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCAT < SRR4302542.5705244/94‑1 (MQ=60)
ATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCAT < SRR4302542.719568/94‑1 (MQ=60)
ATAATGATGTAATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCAT < SRR4302542.2439840/94‑1 (MQ=60)
TGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATA > SRR4302542.1537669/1‑94 (MQ=60)
GATGATGTCATCGGCGGTGCCCCCGGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAA < SRR4302542.5790790/94‑1 (MQ=60)
GATGATGTCATCGGCGGTGCCCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAA < SRR4302542.3918160/94‑1 (MQ=60)
GATGATGTCATCGGCGGTGCCCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAA < SRR4302542.5616248/94‑1 (MQ=60)
GATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCCGCTAACAAGTCATAA > SRR4302542.3908494/1‑94 (MQ=60)
ATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAC > SRR4302542.1460839/1‑94 (MQ=60)
ATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAC > SRR4302542.3079130/1‑94 (MQ=60)
ATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAC > SRR4302542.4324102/1‑94 (MQ=60)
ATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAC < SRR4302542.2520463/94‑1 (MQ=60)
ATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAAC < SRR4302542.5885763/94‑1 (MQ=60)
TGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACC < SRR4302542.6531521/94‑1 (MQ=60)
TGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACC < SRR4302542.6079926/94‑1 (MQ=60)
TGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACC < SRR4302542.2078967/94‑1 (MQ=60)
GATGTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCG < SRR4302542.850800/94‑1 (MQ=60)
TGTCATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAG < SRR4302542.6908922/94‑1 (MQ=60)
TGTCATCGGCGGTGACCACGGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAG < SRR4302542.5504565/94‑1 (MQ=60)
GTCATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGA > SRR4302542.3041008/1‑94 (MQ=60)
TCACCGGCGGTGCCCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAA < SRR4302542.5210610/94‑1 (MQ=60)
CATCGGCGGTGCCCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAAC < SRR4302542.3360395/94‑1 (MQ=60)
CATCGGCGGTGACCCCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAAC < SRR4302542.4294525/94‑1 (MQ=60)
CATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAAC > SRR4302542.593388/1‑94 (MQ=60)
ATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACG < SRR4302542.1660166/94‑1 (MQ=60)
ATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACG > SRR4302542.950443/1‑94 (MQ=60)
ATCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAAGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACG > SRR4302542.4573206/1‑94 (MQ=60)
TCGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGG < SRR4302542.7234369/94‑1 (MQ=60)
CGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGT > SRR4302542.7272248/1‑94 (MQ=60)
CGGCGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGT < SRR4302542.1900450/94‑1 (MQ=60)
GGGGGTGACCCCCGAGCCGCTGTGGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTT < SRR4302542.7565045/94‑1 (MQ=60)
GGCGGTGCCCCCCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTT < SRR4302542.216745/94‑1 (MQ=60)
CGGTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTG > SRR4302542.5623330/1‑94 (MQ=60)
GTGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCA > SRR4302542.5522030/1‑94 (MQ=60)
TGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAG < SRR4302542.6696414/94‑1 (MQ=60)
TGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAG < SRR4302542.1022584/94‑1 (MQ=60)
TGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAG > SRR4302542.6218793/1‑94 (MQ=60)
TGACCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAG > SRR4302542.2376127/1‑94 (MQ=60)
gccccCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGA < SRR4302542.4304886/89‑1 (MQ=60)
ACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGAT > SRR4302542.3060845/1‑94 (MQ=60)
CCACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATT < SRR4302542.3617394/94‑1 (MQ=60)
CACCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTA < SRR4302542.5667980/94‑1 (MQ=60)
ccgGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAT < SRR4302542.522047/91‑1 (MQ=60)
CCCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTAT < SRR4302542.5223634/94‑1 (MQ=60)
CGGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATG < SRR4302542.6727558/94‑1 (MQ=60)
CCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATG < SRR4302542.2394779/94‑1 (MQ=60)
CCGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATG < SRR4302542.5376021/94‑1 (MQ=60)
CGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGC > SRR4302542.2332401/1‑94 (MQ=60)
CGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGC > SRR4302542.1713001/1‑94 (MQ=60)
CGAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGC < SRR4302542.1435929/94‑1 (MQ=60)
CGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGC > SRR4302542.134479/1‑94 (MQ=60)
GAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCT < SRR4302542.2062634/94‑1 (MQ=60)
GAGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCT < SRR4302542.504423/94‑1 (MQ=60)
AGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTG < SRR4302542.6193859/94‑1 (MQ=60)
AGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTG < SRR4302542.943896/94‑1 (MQ=60)
AGCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTG > SRR4302542.7225642/1‑94 (MQ=60)
GCCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGC > SRR4302542.5462364/1‑94 (MQ=60)
GCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGC < SRR4302542.6569268/94‑1 (MQ=60)
CCGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCA < SRR4302542.1266382/94‑1 (MQ=60)
CGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCAC > SRR4302542.6199762/1‑94 (MQ=60)
CGCTGTCGGGCATCAGGCGGGCAATCTGCTCTCACAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCAC > SRR4302542.51387/1‑94 (MQ=60)
GCTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACC < SRR4302542.411297/94‑1 (MQ=60)
CTGTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCA > SRR4302542.3580412/1‑94 (MQ=60)
GTCGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACC > SRR4302542.4004258/1‑94 (MQ=60)
TCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCC < SRR4302542.5098737/94‑1 (MQ=60)
CGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCG > SRR4302542.7394228/1‑94 (MQ=60)
CGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCG < SRR4302542.4925587/94‑1 (MQ=60)
CGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCG < SRR4302542.1125829/94‑1 (MQ=60)
CGGGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCG < SRR4302542.6007795/94‑1 (MQ=60)
GGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCGGC < SRR4302542.44777/94‑1 (MQ=60)
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GGTTTACACACTGCCATTAACGCCAGCGACATCGAGTTATGGCAGCCGCTGGTGATGATGATGTCATCGGCGGTGACCACCGAGCCGCTGTCGAGCATCAGGCGGGCAATCTGCTCTCGCAATACTCGCTGACCGGCTAACAAGTCATAACCGAGAACGGTTTGCAGATTATGCTGCACCACCCGGC > NC_000913/4568572‑4568758
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
