Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTC > NC_000913/2765375‑2765559
|
GAACCTCTTCTTTCTAACCGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTACCTTGTCAAATATGATCAAAAAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑Cct < SRR4302542.7498855/94‑3 (MQ=60)
GAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAA‑A‑‑A‑C‑C‑C‑CC‑CT > SRR4302542.7208729/1‑94 (MQ=60)
GAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑C‑‑C‑C‑C‑C‑CC‑CTC > SRR4302542.5247850/1‑94 (MQ=60)
GAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑AC‑CTC > SRR4302542.6647519/1‑94 (MQ=60)
CTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAA‑A‑‑C‑C‑A‑C‑CT‑CTCACAAC > SRR4302542.541788/1‑94 (MQ=60)
TCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTT‑GCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CCCACAACGTCC > SRR4302542.1745061/1‑94 (MQ=60)
CTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AAGC‑C‑C‑C‑CC‑CTCtacaatg > SRR4302542.5617497/1‑87 (MQ=60)
TCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTG < SRR4302542.1352451/94‑1 (MQ=60)
TCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTG < SRR4302542.2325897/94‑1 (MQ=60)
CTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGC > SRR4302542.2193793/1‑94 (MQ=60)
AAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCAT < SRR4302542.2852929/94‑1 (MQ=60)
AAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCAT < SRR4302542.7489267/94‑1 (MQ=60)
AAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATA > SRR4302542.4700122/1‑94 (MQ=60)
AACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATA < SRR4302542.6262680/94‑1 (MQ=60)
AACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATA < SRR4302542.5361914/94‑1 (MQ=60)
CGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGG < SRR4302542.2819448/94‑1 (MQ=60)
CGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGG < SRR4302542.4614757/94‑1 (MQ=60)
CGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGG < SRR4302542.4684677/94‑1 (MQ=60)
CGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CCCACAACGTGCTGCCTAGG > SRR4302542.4628205/1‑94 (MQ=60)
GAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGG < SRR4302542.6006523/94‑1 (MQ=60)
GAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CCACTCACAACGTCCTGCATAGGG > SRR4302542.4722620/1‑94 (MQ=60)
AACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑CAC‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGA > SRR4302542.5900257/1‑94 (MQ=60)
AACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAA > SRR4302542.5133111/1‑94 (MQ=60)
ACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAA < SRR4302542.209259/94‑1 (MQ=60)
CCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAAC < SRR4302542.2070288/94‑1 (MQ=60)
CCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑CAC‑C‑CC‑CTCACAACGTCCTGCATAGGGAAC > SRR4302542.4537638/1‑94 (MQ=60)
GGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑Ccccacaccctcctccatagggaaccc > SRR4302542.2407640/1‑68 (MQ=60)
AGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AGC‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACAC < SRR4302542.1888606/94‑1 (MQ=60)
AGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACAC < SRR4302542.6859565/94‑1 (MQ=60)
GTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGCCCTGCATAGGGAAC‑CGT > SRR4302542.5964057/1‑94 (MQ=60)
GTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑Cctcacaacctccttcatcctgatcacg > SRR4302542.5157759/1‑67 (MQ=60)
GTATAGAATTCGCACTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑CAC‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAAGACG > SRR4302542.2867321/1‑94 (MQ=60)
TATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACCCGTT > SRR4302542.5276246/1‑94 (MQ=60)
ATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAcgacgct > SRR4302542.3426423/1‑87 (MQ=60)
TAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTT < SRR4302542.6515734/94‑1 (MQ=60)
AGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑CTCA‑CTCACATCGTCCTGCAGCGGGTACACGTTTT > SRR4302542.5432348/1‑94 (MQ=60)
AATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑ACCC‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTC < SRR4302542.2811004/94‑1 (MQ=60)
AATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAAAACGTTTTCC > SRR4302542.2943137/1‑94 (MQ=60)
ATTCGCCCTTTTGGCATGATATTATCTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CCCACAACGTCCTGCATAGGGAACACGTTTTCCC < SRR4302542.3530467/94‑1 (MQ=60)
TTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCC < SRR4302542.1028542/94‑1 (MQ=60)
TCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCT < SRR4302542.7247477/94‑1 (MQ=60)
CGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGGACACGTTTTCCCCTGT > SRR4302542.7059400/1‑94 (MQ=60)
GCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGCTTTCCCCTGT > SRR4302542.1727855/1‑94 (MQ=60)
CCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGC > SRR4302542.2721660/1‑94 (MQ=60)
CCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CCCACAACGTCCTCCCTAGGGAACCCCTTTTCCCCTttgt > SRR4302542.916222/1‑90 (MQ=60)
CCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑CGC‑C‑CC‑CTTACAACGTCCTccatacgtggctctttatcccggctgc > SRR4302542.1899886/1‑67 (MQ=60)
CTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGGACACGTTTTCCCCTATGCA > SRR4302542.938419/1‑94 (MQ=60)
CTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAC > SRR4302542.1423094/1‑94 (MQ=60)
CTTTGGGCATGATATTAACTTGTCCAATATAATAAAATAGCATT‑ACC‑‑C‑C‑C‑C‑CC‑CCCACAACGCCCTGCATAGGGAACCCTTTTCCCCCTGTGCA < SRR4302542.337359/94‑1 (MQ=36)
GGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCAC < SRR4302542.2014969/94‑1 (MQ=60)
GGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑A‑C‑C‑C‑CC‑CTtcagatcggcctacatagtgaagacgtctttccctgcactcacac > SRR4302542.3185718/1‑49 (MQ=60)
GCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCCCACCGTCCTGCATAGGGAACCCGTTTTCCCCTCTGCACCCACG > SRR4302542.5476477/1‑94 (MQ=60)
GCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACG < SRR4302542.7295765/94‑1 (MQ=60)
TGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACT < SRR4302542.7328149/94‑1 (MQ=60)
TGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACT < SRR4302542.1026958/94‑1 (MQ=60)
ATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑CAC‑CC‑CTCACAACGCCTTGCCTAGGGCACACGTTTTCCCCTGTGCACCAACGCCTAA > SRR4302542.7501692/1‑94 (MQ=60)
TATTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAA < SRR4302542.2294588/94‑1 (MQ=60)
TATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAAT > SRR4302542.5376233/1‑94 (MQ=60)
ATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑CAC‑CC‑CTCACCCCGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAAT > SRR4302542.4649756/1‑94 (MQ=60)
TTAACTTGTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT < SRR4302542.5231860/94‑1 (MQ=60)
CTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGCCTAAATTT‑‑CCCC > SRR4302542.4325910/1‑94 (MQ=60)
GTCCAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑Cacacc > SRR4302542.2816613/1‑89 (MQ=60)
TCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑Caacacctccccccccatggtacaactgggtcacactgacccgaccccaccgccatcccccccc > SRR4302542.4693793/1‑31 (MQ=60)
CCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑Cctccagccttcccgcgcagggaggacgtttttcgttgctcagcgaccactaagtttccccctct > SRR4302542.3705788/1‑30 (MQ=60)
CAATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACCACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAGTTT‑‑CCCCCCCTT > SRR4302542.673093/1‑94 (MQ=60)
ATATGATCAAATAGCATT‑A‑ACCC‑C‑C‑C‑CC‑CTCACCACGCCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTT > SRR4302542.2904662/1‑94 (MQ=60)
ATATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTACCTTT‑‑CCCCCCCTTTC > SRR4302542.5629646/1‑94 (MQ=60)
ATGATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAA > SRR4302542.6304466/1‑94 (MQ=60)
GATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACT > SRR4302542.6946688/1‑94 (MQ=60)
ATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTT > SRR4302542.1136010/1‑94 (MQ=60)
ATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTT > SRR4302542.3481916/1‑94 (MQ=60)
ATCAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCAAAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTT > SRR4302542.4827305/1‑94 (MQ=60)
ATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTC > SRR4302542.2532896/1‑94 (MQ=60)
ATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTC > SRR4302542.1491788/1‑94 (MQ=60)
CAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCT > SRR4302542.1790652/1‑94 (MQ=60)
CAAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCT < SRR4302542.306241/94‑1 (MQ=60)
AAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTC > SRR4302542.5206791/1‑94 (MQ=60)
AAATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGGTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTCAACTTCTC > SRR4302542.5746732/1‑94 (MQ=60)
AATAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAACCTTCTCA > SRR4302542.5544751/1‑94 (MQ=60)
TAGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAAT < SRR4302542.5024205/94‑1 (MQ=60)
TAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATA > SRR4302542.2500852/1‑94 (MQ=60)
AGCATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATA < SRR4302542.5486225/94‑1 (MQ=60)
CATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCGCCCTTTCAACTTCTCAATAAT > SRR4302542.3908608/1‑94 (MQ=60)
CATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAAT < SRR4302542.3557402/94‑1 (MQ=60)
CATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAAT > SRR4302542.1385295/1‑94 (MQ=60)
ATT‑A‑AC‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATG < SRR4302542.2802771/94‑1 (MQ=60)
taaccC‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGT < SRR4302542.5448652/89‑1 (MQ=60)
A‑C‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCAC > SRR4302542.1278556/1‑94 (MQ=60)
aacC‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCCCCCACGACTAAATTTCCCCCCCCCTTTAAACTTCTCAATAATGT < SRR4302542.4096780/91‑1 (MQ=60)
C‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACC > SRR4302542.5613236/1‑94 (MQ=60)
C‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACC < SRR4302542.5550235/94‑1 (MQ=60)
C‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACC < SRR4302542.1326710/94‑1 (MQ=60)
C‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACC > SRR4302542.3671920/1‑94 (MQ=60)
ccC‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCAC > SRR4302542.977922/3‑94 (MQ=60)
C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCA > SRR4302542.1393543/1‑94 (MQ=60)
C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCA > SRR4302542.6151883/1‑94 (MQ=60)
C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAAT > SRR4302542.7187334/1‑94 (MQ=60)
C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAAT > SRR4302542.5190099/1‑94 (MQ=60)
C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATT < SRR4302542.3905163/94‑1 (MQ=60)
C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATT > SRR4302542.174843/1‑94 (MQ=60)
CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTT > SRR4302542.3757542/1‑94 (MQ=60)
C‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTT > SRR4302542.3595332/1‑94 (MQ=60)
C‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTT < SRR4302542.2881532/94‑1 (MQ=60)
C‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTT > SRR4302542.5757076/1‑94 (MQ=60)
C‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTT > SRR4302542.56672/1‑94 (MQ=60)
CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCGCCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTC > SRR4302542.6269076/1‑94 (MQ=60)
CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTC > SRR4302542.7434759/1‑94 (MQ=60)
CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTC > SRR4302542.1283165/1‑94 (MQ=60)
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GAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑A‑A‑‑C‑C‑C‑C‑CC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑‑CCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTC > NC_000913/2765375‑2765559
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
