Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
245 |
579.6 |
28867798 |
97.7% |
28203838 |
96.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTGGAAGAATAGACCTATCACTGCAT‑AA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑CC‑‑GCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC > NC_000913/4474797‑4474956
|
NNNGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG < SRR4302518.8959334/101‑1 (MQ=36)
GGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG < SRR4302518.1257440/101‑1 (MQ=41)
GGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG < SRR4302518.3500798/101‑1 (MQ=41)
GTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGC < SRR4302518.4447401/101‑1 (MQ=39)
TGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG < SRR4302518.5388823/101‑1 (MQ=37)
NNNAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG < SRR4302518.12636057/101‑1 (MQ=32)
GGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGA > SRR4302518.3683053/1‑101 (MQ=36)
GAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302518.4114085/1‑101 (MQ=34)
AAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACC > SRR4302518.5902250/1‑101 (MQ=34)
AGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCA < SRR4302518.2972078/101‑1 (MQ=34)
AGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCA > SRR4302518.3221910/1‑101 (MQ=34)
NNNTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCGT < SRR4302518.11332939/101‑1 (MQ=25)
NNNTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCCT < SRR4302518.14799598/101‑1 (MQ=25)
GAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCAT < SRR4302518.3271193/101‑1 (MQ=34)
NNNAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC < SRR4302518.8919347/101‑1 (MQ=28)
AATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC < SRR4302518.1553487/101‑1 (MQ=34)
ATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCA < SRR4302518.5212184/101‑1 (MQ=34)
ATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCA > SRR4302518.3403909/1‑101 (MQ=34)
TAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302518.310348/1‑101 (MQ=34)
TAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302518.4180177/1‑101 (MQ=34)
NNNCCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGTGCGTCGCGACCATCATC < SRR4302518.10756794/101‑1 (MQ=17)
NNNCCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC < SRR4302518.14755055/101‑1 (MQ=28)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCNNN > SRR4302518.10951161/1‑101 (MQ=28)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC > SRR4302518.1551125/1‑101 (MQ=34)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC < SRR4302518.3733332/101‑1 (MQ=34)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC > SRR4302518.3463482/1‑101 (MQ=34)
NNNCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCA < SRR4302518.11894981/101‑1 (MQ=27)
GACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCANNN > SRR4302518.9161002/1‑101 (MQ=28)
GACCTATCACTGCAT‑AAGATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCG > SRR4302518.2328494/1‑101 (MQ=34)
ACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACNNN > SRR4302518.9008658/1‑101 (MQ=28)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCNNN > SRR4302518.12850630/1‑101 (MQ=28)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT < SRR4302518.1645563/101‑1 (MQ=34)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCACT > SRR4302518.5162219/1‑101 (MQ=28)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGAGGGTGTGTATTT‑‑‑‑‑‑‑‑CCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT > SRR4302518.2073406/1‑101 (MQ=23)
NNNTCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTT < SRR4302518.14615010/101‑1 (MQ=28)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGNNN > SRR4302518.8486207/1‑101 (MQ=28)
TATCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTT < SRR4302518.4946066/101‑1 (MQ=34)
NNNACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG < SRR4302518.9935056/101‑1 (MQ=28)
NNNACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG < SRR4302518.14654497/101‑1 (MQ=28)
TCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302518.6386539/1‑101 (MQ=34)
TCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA < SRR4302518.645947/101‑1 (MQ=34)
TCACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302518.762872/1‑101 (MQ=34)
nnntncataAA‑ATAATGTGATNCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGAT < SRR4302518.8253212/92‑1 (MQ=31)
CACTGCATAAA‑ATAATGTGATGCCGGGATGGGTTGTATTT‑‑‑‑‑‑‑‑CCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACTGCTTTGta > SRR4302518.2571270/1‑99 (MQ=20)
nnngcataAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA < SRR4302518.9394217/93‑1 (MQ=36)
agtgcataAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATCATTTACTGAGCGTCGCGACCATCACCGCTTTGNNN > SRR4302518.10771854/9‑101 (MQ=21)
aatgcataAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGNNN > SRR4302518.11221147/9‑101 (MQ=30)
ACTGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA > SRR4302518.5619928/1‑101 (MQ=34)
nnncataAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCTCCGCTTTGATAG < SRR4302518.11370120/94‑1 (MQ=28)
nnncataAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAG < SRR4302518.14605619/94‑1 (MQ=38)
TGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATNNN > SRR4302518.7861167/1‑101 (MQ=32)
TGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302518.1997509/101‑1 (MQ=37)
TGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > SRR4302518.4478047/1‑101 (MQ=37)
TGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGACCGTCGCGACCATCACCGCTTTGATNNN > SRR4302518.12175181/1‑101 (MQ=23)
TGCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATGATTTACTGAGCGTCGCGACCATCACCGCTTTGATNNN > SRR4302518.12876834/1‑101 (MQ=23)
GCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTCCTGAGCGTCGCGACCATCACCGCTTTGATANNN > SRR4302518.12833322/1‑101 (MQ=25)
GCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATANNN > SRR4302518.12823606/1‑101 (MQ=34)
GCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATANNN > SRR4302518.10475821/1‑101 (MQ=34)
GCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA < SRR4302518.2665287/101‑1 (MQ=39)
GCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA < SRR4302518.3378740/101‑1 (MQ=39)
GCATAAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA < SRR4302518.4695149/101‑1 (MQ=39)
nnnaAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302518.14528007/97‑1 (MQ=43)
NNN‑AA‑ATAATGTGATGCCGGGATGGTGTGTATTT‑‑‑‑‑‑‑‑CCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATG < SRR4302518.12491883/101‑1 (MQ=41)
ataAA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATG < SRR4302518.5499731/98‑1 (MQ=44)
NN‑NA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGC < SRR4302518.13810409/101‑1 (MQ=43)
A‑AA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTCTTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCA > SRR4302518.4493363/1‑101 (MQ=37)
NN‑NTAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCTT < SRR4302518.12017855/101‑1 (MQ=39)
AA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGNNN > SRR4302518.10871760/1‑101 (MQ=43)
AA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302518.3116812/101‑1 (MQ=49)
AA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302518.317160/101‑1 (MQ=49)
A‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCNNN > SRR4302518.8109514/1‑101 (MQ=43)
A‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCNNN > SRR4302518.13033267/1‑101 (MQ=43)
A‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATA > SRR4302518.780479/1‑101 (MQ=49)
A‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATA < SRR4302518.1137218/101‑1 (MQ=49)
ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATAC < SRR4302518.6213121/101‑1 (MQ=49)
ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATAC < SRR4302518.3129950/101‑1 (MQ=49)
ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCANNN > SRR4302518.10178962/1‑101 (MQ=43)
ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGCATGCANNN > SRR4302518.8966675/1‑101 (MQ=34)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGTTAGTATGCATNNN > SRR4302518.9911018/1‑101 (MQ=34)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACG < SRR4302518.4116393/101‑1 (MQ=49)
TAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACG < SRR4302518.7332559/101‑1 (MQ=49)
AATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGG > SRR4302518.5670500/1‑101 (MQ=52)
ATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACNNN > SRR4302518.13254529/1‑101 (MQ=47)
ATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGT > SRR4302518.857489/1‑101 (MQ=54)
ATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGT > SRR4302518.4808532/1‑101 (MQ=54)
TGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGNNN > SRR4302518.14832374/1‑101 (MQ=49)
TGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTT < SRR4302518.5983151/101‑1 (MQ=56)
GTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTT < SRR4302518.533779/101‑1 (MQ=58)
GTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTT < SRR4302518.2600930/101‑1 (MQ=58)
GTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGNNN > SRR4302518.11528641/1‑101 (MQ=52)
GTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGNNN > SRR4302518.14757972/1‑101 (MQ=52)
TTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCTCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT < SRR4302518.5374400/101‑1 (MQ=60)
TTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGNNN > SRR4302518.14542234/1‑101 (MQ=60)
TTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT < SRR4302518.5063052/101‑1 (MQ=60)
TTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATT > SRR4302518.2001286/1‑101 (MQ=60)
TATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC < SRR4302518.4093512/101‑1 (MQ=60)
TATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC < SRR4302518.2959716/101‑1 (MQ=60)
TATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC > SRR4302518.304168/1‑101 (MQ=60)
TATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC > SRR4302518.4675100/1‑101 (MQ=60)
TATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC < SRR4302518.5898133/101‑1 (MQ=60)
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GGTGGAAGAATAGACCTATCACTGCAT‑AA‑ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑CC‑‑GCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTCCGCCTGATCAAAAACAATGCTGGCGGCAGATTC > NC_000913/4474797‑4474956
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
