Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	746,390	A→G	R201R (CGT→CGC)	abrB ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	746,390	0	A	G	100.0%	686.2 / NA	199	R201R (CGT→CGC)	abrB	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (89/110); total (89/110)

Only 100 of 209 total aligned reads displayed.

CAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGACGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATG  >  NC_000913/746300‑746479

 agcCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGgcgc                                                                                        >  1:510363/1‑93 (MQ=255)

 acccATTCGGGAAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGgcgc                                                                                        <  2:3607884/91‑1 (MQ=255)

  gcCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAATGCgca                                                                                       >  2:6168307/1‑93 (MQ=255)

   ccATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCgcag                                                                                      >  1:483336/1‑93 (MQ=255)

     aTTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCgcagca                                                                                    >  1:1451457/1‑93 (MQ=255)

     aTTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCgcagca                                                                                    >  1:5347460/1‑93 (MQ=255)

        ccGGTATTTCGATGGTGATGAGCTGACCAGACGGGAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGc                                                                                 <  2:5277094/93‑1 (MQ=255)

        ccGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGc                                                                                 >  1:2243786/1‑93 (MQ=255)

           gTAGTTGGATGGTGATGAGCTGACCAGACGGGAGCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATc                                                                              <  1:2585982/93‑1 (MQ=255)

           gTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATc                                                                              >  2:5221592/1‑93 (MQ=255)

           gTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATc                                                                              >  1:1762716/1‑93 (MQ=255)

            tAGTTCGAGGGTGATGAGCTGCCCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATcc                                                                             <  2:366442/93‑1 (MQ=255)

             aGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATccc                                                                            >  1:6338306/1‑93 (MQ=255)

             aGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATccc                                                                            >  2:5924230/1‑93 (MQ=255)

               ttCGATGGTGATGAGCCGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCAc                                                                          >  2:5658015/1‑93 (MQ=255)

               ttCGATGGTGAGGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCAc                                                                          <  1:6181959/93‑1 (MQ=255)

                tCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACt                                                                         >  2:3873531/1‑93 (MQ=255)

                 cGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTg                                                                        >  1:1254257/1‑93 (MQ=255)

                  gATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCTCACTGt                                                                       >  2:6415205/1‑93 (MQ=255)

                    tgttgatgaGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTAc                                                                     <  1:5547159/90‑1 (MQ=255)

                    tGGTGATGCGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTAc                                                                     <  1:2631889/93‑1 (MQ=255)

                     ggTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTAcc                                                                    >  2:200113/1‑93 (MQ=255)

                     ggTGATGAGCTGACCAGACGGGAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTAcc                                                                    <  2:2572875/93‑1 (MQ=255)

                      gTGAGGAGCGGACCAGACTGGAGCACTGCCCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCg                                                                   <  1:601582/93‑1 (MQ=255)

                        gatgaGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGc                                                                 >  1:1943776/1‑93 (MQ=255)

                          tgaGCTGACCAGACTGGACCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCaa                                                               <  2:4598956/93‑1 (MQ=255)

                          tgaGCTGACCAGACGGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCaa                                                               <  1:5172314/93‑1 (MQ=255)

                            aGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACg                                                             >  1:40641/1‑93 (MQ=255)

                            aGCTGACCAGACGGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACg                                                             <  1:5648680/93‑1 (MQ=255)

                             gCTGCCCAAACTGGAGCACGGCCCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGa                                                            <  1:3665627/93‑1 (MQ=255)

                              ctaaCCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGAc                                                           <  1:5370767/90‑1 (MQ=255)

                               tgcccAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGAcc                                                          <  2:5898452/90‑1 (MQ=255)

                               tGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGAcc                                                          <  1:2981468/93‑1 (MQ=255)

                               tGACCAGACGGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCAATGTACCGGCAACGAcc                                                          <  2:4860490/93‑1 (MQ=255)

                                gACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACcg                                                         >  1:604695/1‑93 (MQ=255)

                                gACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACcg                                                         >  1:4598488/1‑93 (MQ=255)

                                 aCCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACcgc                                                        >  2:4120775/1‑93 (MQ=255)

                                  ccAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACcgcg                                                       >  1:4366742/1‑93 (MQ=255)

                                   cAGCCTGGAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGa                                                      <  2:3385052/93‑1 (MQ=255)

                                   cAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGa                                                      <  2:4722483/93‑1 (MQ=255)

                                   cAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGa                                                      >  2:1153935/1‑93 (MQ=255)

                                   cAGACTGGAGCACTGCCCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGa                                                      <  2:2822266/93‑1 (MQ=255)

                                       cgggAGCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCaa                                                  <  2:2322053/91‑1 (MQ=255)

                                          gAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAAt                                               <  1:197736/93‑1 (MQ=255)

                                          gAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAAt                                               >  1:4211075/1‑93 (MQ=255)

                                           aGCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATa                                              <  1:3844515/93‑1 (MQ=255)

                                             cACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGt                                            <  1:1178652/93‑1 (MQ=255)

                                              ccggcgcCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTa                                           <  2:1184549/90‑1 (MQ=255)

                                              ccTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTa                                           <  1:2906804/92‑1 (MQ=255)

                                               cTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTaa                                          >  1:3907999/1‑93 (MQ=255)

                                               cTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGCaa                                          <  2:804972/93‑1 (MQ=255)

                                                tGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCACAATAGTAAg                                         >  2:3491967/1‑93 (MQ=255)

                                                tGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAg                                         >  1:2132694/1‑93 (MQ=255)

                                                 gcgcCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGc                                        >  2:1860544/1‑93 (MQ=255)

                                                    cccgccAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAgg                                     >  1:638705/1‑93 (MQ=255)

                                                     ccgccAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGga                                    >  1:5112849/1‑93 (MQ=255)

                                                      cgccAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGgag                                   <  1:4051333/93‑1 (MQ=255)

                                                       gccAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCGACGACCGCGAGCAAAATAGTAAGCAGgaga                                  >  2:2718713/1‑93 (MQ=255)

                                                       gccAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGgaga                                  >  2:3431713/1‑93 (MQ=255)

                                                       gccAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGgaga                                  <  2:6067899/93‑1 (MQ=255)

                                                         cAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGAtt                                <  2:5977946/93‑1 (MQ=255)

                                                          aGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTa                               <  1:4741433/93‑1 (MQ=255)

                                                           gCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTCCCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTaa                              <  1:5241542/93‑1 (MQ=255)

                                                           gCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTaa                              <  1:5442442/93‑1 (MQ=255)

                                                            cATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAt                             >  2:1524737/1‑93 (MQ=255)

                                                            cATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAt                             >  2:1249106/1‑93 (MQ=255)

                                                               cGGGATGATCATCGTGCCGGAAGGAAGGCGCAGCAGGCAGCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCt                          <  1:4530907/93‑1 (MQ=255)

                                                                gggATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTc                         >  1:3331323/1‑93 (MQ=255)

                                                                gggATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTc                         >  1:3418210/1‑93 (MQ=255)

                                                                 ggATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCa                        >  2:1827701/1‑93 (MQ=255)

                                                                 ggATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCa                        <  1:2227528/93‑1 (MQ=255)

                                                                  gATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAc                       <  1:1633998/93‑1 (MQ=255)

                                                                  gATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAc                       >  1:2308537/1‑93 (MQ=255)

                                                                  gATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAc                       >  1:274123/1‑93 (MQ=255)

                                                                  gATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAc                       >  2:3069481/1‑93 (MQ=255)

                                                                  gATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAc                       <  2:33529/93‑1 (MQ=255)

                                                                    tGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTg                     <  1:6234509/93‑1 (MQ=255)

                                                                    tGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTg                     <  1:3138220/93‑1 (MQ=255)

                                                                    tGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTg                     >  1:3885430/1‑93 (MQ=255)

                                                                    tGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTg                     <  2:3801106/93‑1 (MQ=255)

                                                                     gAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTgg                    <  1:102802/93‑1 (MQ=255)

                                                                     gAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTgg                    <  1:3244327/93‑1 (MQ=255)

                                                                       gCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCg                  >  2:1766561/1‑93 (MQ=255)

                                                                          tCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGa               >  2:5437825/1‑93 (MQ=255)

                                                                            gTGCCGGAATGAATGCGCAGCAGTCATCCCACGGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAAc             <  2:608390/93‑1 (MQ=255)

                                                                            gTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAAc             <  1:3701161/93‑1 (MQ=255)

                                                                              gCCGGAAGGAAGGCTCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCa           <  1:4250946/93‑1 (MQ=255)

                                                                               ccGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAg          >  1:2449972/1‑93 (MQ=255)

                                                                                cGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGa         <  2:2843427/93‑1 (MQ=255)

                                                                                 ggaaggaaGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAc        <  2:4308362/93‑1 (MQ=255)

                                                                                 ggaaggaaGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAc        <  2:6254428/93‑1 (MQ=255)

                                                                                 ggaaggaaGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAc        <  1:2802933/93‑1 (MQ=255)

                                                                                 ggaaggaaGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAc        >  1:983751/1‑93 (MQ=255)

                                                                                  gaaggaagGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACg       >  2:1096892/1‑93 (MQ=255)

                                                                                   aaggaaggCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGa      <  2:163289/93‑1 (MQ=255)

                                                                                    aggaagGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGat     >  2:2765029/1‑93 (MQ=255)

                                                                                     ggaagGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGata    <  1:4239015/93‑1 (MQ=255)

                                                                                     ggaagGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGata    >  2:4811006/1‑93 (MQ=255)

                                                                                       aagGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATg  >  2:2162548/1‑93 (MQ=255)

                                                                                       aagGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATg  >  2:662191/1‑93 (MQ=255)

CAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGACGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATG  >  NC_000913/746300‑746479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGACGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATGCTGG  >  NC_000913/746297‑746483

CAGCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGG                                                                                               >  SRR4302534.1818534/1‑94 (MQ=60)

CAGCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGG                                                                                               >  SRR4302534.5334261/1‑94 (MQ=60)

CAGCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGG                                                                                               >  SRR4302534.3158589/1‑94 (MQ=60)

 AGCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGC                                                                                              >  SRR4302534.1540444/1‑94 (MQ=60)

 AGCAGCCATCCCGGTAGTTCGATGGTGATGAGCTGCCCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGC                                                                                              <  SRR4302534.3499490/94‑1 (MQ=60)

  GCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCG                                                                                             <  SRR4302534.5902498/94‑1 (MQ=60)

   CAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGC                                                                                            >  SRR4302534.523076/1‑94 (MQ=60)

     GCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAG                                                                                          >  SRR4302534.495447/1‑94 (MQ=60)

     GCAATCCCGGTAGTTCGATGGTGATGGGCTGACCAGCTCGGAGCACTCCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAG                                                                                          <  SRR4302534.2195360/94‑1 (MQ=60)

       CATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCA                                                                                        >  SRR4302534.748787/1‑94 (MQ=60)

       CATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCA                                                                                        >  SRR4302534.1489639/1‑94 (MQ=60)

       CATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCA                                                                                        >  SRR4302534.1353325/1‑94 (MQ=60)

       CATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCA                                                                                        >  SRR4302534.5491644/1‑94 (MQ=60)

        ttcccggtagtgggagGGTGATGAGCTGACCAGACTGGAGCTCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAG                                                                                       <  SRR4302534.2295174/78‑1 (MQ=60)

         TTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGG                                                                                      >  SRR4302534.3139610/1‑94 (MQ=60)

          TCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGC                                                                                     >  SRR4302534.2303249/1‑94 (MQ=60)

            cgtcacttcgttggttctcaggtgaccagaccgccgcccccgGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCAT                                                                                   <  SRR4302534.627206/52‑1 (MQ=60)

             GGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATC                                                                                  >  SRR4302534.1808454/1‑94 (MQ=60)

              GTAGTTGGATGGTGATGAGCTGACCAGACGGGAGCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCC                                                                                 <  SRR4302534.2654445/94‑1 (MQ=60)

               TGGTTCGATGGTTAGGAGCTGACCAGTCGGGATCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCC                                                                                <  SRR4302534.4400363/94‑1 (MQ=60)

               TAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCC                                                                                >  SRR4302534.6509517/1‑94 (MQ=60)

                  TTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACT                                                                             >  SRR4302534.5656117/1‑94 (MQ=60)

                  TTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACT                                                                             <  SRR4302534.4698754/94‑1 (MQ=60)

                  TTCGATGGTGAGGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACT                                                                             <  SRR4302534.6350217/94‑1 (MQ=60)

                   TCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTG                                                                            >  SRR4302534.1287315/1‑94 (MQ=60)

                    CGAGGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGT                                                                           <  SRR4302534.4913510/94‑1 (MQ=60)

                      ATGGTGATGAGCTGACCAGACTGGAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTAC                                                                         <  SRR4302534.5680136/94‑1 (MQ=60)

                       TGTTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACC                                                                        <  SRR4302534.5696894/94‑1 (MQ=60)

                       TGGTGATGCGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACC                                                                        <  SRR4302534.2701523/94‑1 (MQ=60)

                       TGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACC                                                                        >  SRR4302534.4816212/1‑94 (MQ=60)

                         GTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGG                                                                      >  SRR4302534.3777128/1‑94 (MQ=60)

                         GTGAGGAGCGGACCAGACTGGAGCACTGCCCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGG                                                                      <  SRR4302534.616244/94‑1 (MQ=60)

                          TGATGAGCTGACCAGACTGGAGCCCGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGC                                                                     <  SRR4302534.3710683/94‑1 (MQ=60)

                          TGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGC                                                                     >  SRR4302534.2684325/1‑94 (MQ=60)

                          TGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGC                                                                     >  SRR4302534.1994613/1‑94 (MQ=60)

                             tgagccgcccaaccggggGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAAC                                                                  <  SRR4302534.5451030/76‑1 (MQ=60)

                             TGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAAC                                                                  >  SRR4302534.16765/1‑94 (MQ=60)

                             TGAGCTGACCAGACGGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAAC                                                                  <  SRR4302534.5311721/94‑1 (MQ=60)

                              GAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACG                                                                 >  SRR4302534.41726/1‑94 (MQ=60)

                              GAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACG                                                                 <  SRR4302534.3014672/94‑1 (MQ=60)

                               gccggcgcagcCTGGAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGA                                                                <  SRR4302534.2686600/83‑1 (MQ=60)

                               AGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGA                                                                >  SRR4302534.5510626/1‑94 (MQ=60)

                               AGCTGACCAGACGGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGA                                                                <  SRR4302534.5801591/94‑1 (MQ=60)

                                GCTGCCCAAACTGGAGCACGGCCCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGAC                                                               <  SRR4302534.3764140/94‑1 (MQ=60)

                                 tacacaaatccggagtatccgtCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACC                                                              <  SRR4302534.5687790/72‑1 (MQ=60)

                                 ctgccccgtctgcagcccgtccCCCGCCAGCATCGGGATGAGCATCGTCCCGGAAGTAAGCCGCAGCAGGCATCCCACTGTTCCGGCAACGACC                                                              <  SRR4302534.2659824/72‑1 (MQ=60)

                                 CTGCCCAGACTGGAGCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACC                                                              <  SRR4302534.2841420/94‑1 (MQ=60)

                                 CTAACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACC                                                              <  SRR4302534.5515492/94‑1 (MQ=60)

                                  TGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCG                                                             <  SRR4302534.3059482/94‑1 (MQ=60)

                                  TGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCG                                                             >  SRR4302534.619417/1‑94 (MQ=60)

                                  TGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCG                                                             >  SRR4302534.4723295/1‑94 (MQ=60)

                                   GACCAGACTGAAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGACGCAGCACGCATCCCACTGTACCGGacacgaccga                                                            >  SRR4302534.3286583/1‑84 (MQ=60)

                                    ACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCG                                                           <  SRR4302534.649510/94‑1 (MQ=60)

                                    ACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCG                                                           >  SRR4302534.4484449/1‑94 (MQ=60)

                                      cagcctgaacCACTGCCCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAG                                                         <  SRR4302534.6257316/84‑1 (MQ=60)

                                       AGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGC                                                        >  SRR4302534.3911443/1‑94 (MQ=60)

                                         ACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAA                                                      >  SRR4302534.2713360/1‑94 (MQ=60)

                                           TGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAA                                                    >  SRR4302534.4612813/1‑94 (MQ=60)

                                            GGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAAT                                                   >  SRR4302534.4324680/1‑94 (MQ=60)

                                            GAAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAAT                                                   <  SRR4302534.5157030/94‑1 (MQ=60)

                                             GAGCCCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATA                                                  <  SRR4302534.202926/94‑1 (MQ=60)

                                              agcccgcCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAG                                                 <  SRR4302534.1390203/87‑1 (MQ=60)

                                              AGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAG                                                 >  SRR4302534.3348499/1‑94 (MQ=60)

                                              AGCACGGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAG                                                 <  SRR4302534.3947769/94‑1 (MQ=60)

                                                CACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTA                                               <  SRR4302534.1209633/94‑1 (MQ=60)

                                                 CCTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAA                                              <  SRR4302534.2983108/94‑1 (MQ=60)

                                                 ACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAA                                              >  SRR4302534.4012806/1‑94 (MQ=60)

                                                  CTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAG                                             >  SRR4302534.2188882/1‑94 (MQ=60)

                                                  CTCCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAG                                             <  SRR4302534.24329/94‑1 (MQ=60)

                                                     CGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGCGCAAAATAGTAAGCAG                                          >  SRR4302534.1908065/1‑94 (MQ=60)

                                                     CGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAG                                          <  SRR4302534.235513/94‑1 (MQ=60)

                                                      GCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGG                                         >  SRR4302534.654205/1‑94 (MQ=60)

                                                       CCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGA                                        >  SRR4302534.556295/1‑94 (MQ=60)

                                                       CCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGA                                        >  SRR4302534.5250831/1‑94 (MQ=60)

                                                        CCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAG                                       <  SRR4302534.2270712/94‑1 (MQ=60)

                                                         CGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGA                                      >  SRR4302534.5891652/1‑94 (MQ=60)

                                                         CGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGA                                      <  SRR4302534.4159991/94‑1 (MQ=60)

                                                            CAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTA                                   <  SRR4302534.363594/94‑1 (MQ=60)

                                                            CAGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTA                                   <  SRR4302534.5245853/94‑1 (MQ=60)

                                                             AGCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAA                                  <  SRR4302534.4870142/94‑1 (MQ=60)

                                                              GCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTCCCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAT                                 <  SRR4302534.5383081/94‑1 (MQ=60)

                                                              GCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAT                                 <  SRR4302534.4172225/94‑1 (MQ=60)

                                                              GCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAT                                 <  SRR4302534.5490782/94‑1 (MQ=60)

                                                              GCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAT                                 <  SRR4302534.5589050/94‑1 (MQ=60)

                                                              GCATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAAT                                 <  SRR4302534.3992426/94‑1 (MQ=60)

                                                               CATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATG                                <  SRR4302534.4532403/94‑1 (MQ=60)

                                                                ATCGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGC                               <  SRR4302534.4039290/94‑1 (MQ=60)

                                                                  CGGGATGATCATCGTGCCGGAAGGAAGGCGCAGCAGGCAGCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTC                             <  SRR4302534.4653681/94‑1 (MQ=60)

                                                                  CGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTC                             >  SRR4302534.3420432/1‑94 (MQ=60)

                                                                  CGGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTC                             >  SRR4302534.3510054/1‑94 (MQ=60)

                                                                   GGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCA                            <  SRR4302534.6393160/94‑1 (MQ=60)

                                                                   GGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCA                            <  SRR4302534.4220868/94‑1 (MQ=60)

                                                                   GGGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCA                            >  SRR4302534.1712916/1‑94 (MQ=60)

                                                                    GGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAC                           >  SRR4302534.281213/1‑94 (MQ=60)

                                                                    GGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAC                           <  SRR4302534.2286527/94‑1 (MQ=60)

                                                                    GGATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCAC                           >  SRR4302534.2369813/1‑94 (MQ=60)

                                                                     GATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACT                          <  SRR4302534.1676593/94‑1 (MQ=60)

                                                                     GATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACT                          <  SRR4302534.1226829/94‑1 (MQ=60)

                                                                      ATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTG                         <  SRR4302534.2010517/94‑1 (MQ=60)

                                                                      ATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTG                         >  SRR4302534.3989737/1‑94 (MQ=60)

                                                                      ATGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTG                         <  SRR4302534.2034369/94‑1 (MQ=60)

                                                                       TGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGG                        <  SRR4302534.6204181/94‑1 (MQ=60)

                                                                       TGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGG                        <  SRR4302534.3316463/94‑1 (MQ=60)

                                                                       TGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGG                        <  SRR4302534.3220750/94‑1 (MQ=60)

                                                                       TGAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGG                        <  SRR4302534.6403737/94‑1 (MQ=60)

                                                                        GAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGC                       <  SRR4302534.105546/94‑1 (MQ=60)

                                                                        GAGCATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGC                       <  SRR4302534.3330688/94‑1 (MQ=60)

                                                                           CATCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGGGATTAATGCTAACTGGCGGG                    <  SRR4302534.6481136/94‑1 (MQ=60)

                                                                            ATCGTGCCGGGAGGGAGGCGCAGCAGGCATCCCCCTGTACCCGCAACGACCGCGGGCAAAATAGTAAACAGGAGATTAATGCTCACTGGCGGGG                   >  SRR4302534.831123/1‑94 (MQ=60)

                                                                             TCGTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAA                  <  SRR4302534.5311925/94‑1 (MQ=60)

                                                                               GTGCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACC                <  SRR4302534.3800649/94‑1 (MQ=60)

                                                                                 GCCGGAAGGAAGGCTCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAG              <  SRR4302534.4365626/94‑1 (MQ=60)

                                                                                 GCCGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAG              >  SRR4302534.2515068/1‑94 (MQ=60)

                                                                                   CGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAC            <  SRR4302534.5709471/94‑1 (MQ=60)

                                                                                   CGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAC            >  SRR4302534.1008871/1‑94 (MQ=60)

                                                                                   CGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAC            <  SRR4302534.3957377/94‑1 (MQ=60)

                                                                                   CGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAC            <  SRR4302534.2548444/94‑1 (MQ=60)

                                                                                   CGGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGAC            <  SRR4302534.2968509/94‑1 (MQ=60)

                                                                                    GGAAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACG           <  SRR4302534.2876648/94‑1 (MQ=60)

                                                                                      AAGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGAT         <  SRR4302534.1130065/94‑1 (MQ=60)

                                                                                       AGGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATA        <  SRR4302534.342817/94‑1 (MQ=60)

                                                                                        GGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATAT       <  SRR4302534.5279461/94‑1 (MQ=60)

                                                                                        GGAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATAT       <  SRR4302534.4353303/94‑1 (MQ=60)

                                                                                         GAAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATG      <  SRR4302534.4333530/94‑1 (MQ=60)

                                                                                          AAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATGC     >  SRR4302534.4557166/1‑94 (MQ=60)

                                                                                          AAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATGC     >  SRR4302534.2635443/1‑94 (MQ=60)

                                                                                          AAGGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATGC     <  SRR4302534.2467837/94‑1 (MQ=60)

                                                                                            GGCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAATTAGTAAGCAGGCGATTAATGCTCACTGGCGGGGACCAGgcggttttccg   >  SRR4302534.2148984/1‑83 (MQ=60)

                                                                                             GCGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATGCTGG  <  SRR4302534.3954012/94‑1 (MQ=60)

CAGCAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGACGCAGCAGGCATCCCACTGTACCGGCAACGACCGCGAGCAAAATAGTAAGCAGGAGATTAATGCTCACTGGCGGGAACCAGACGATATGCTGG  >  NC_000913/746297‑746483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`