Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	905,792	A→G	V74A (GTG→GCG)	b0868 ←	putative nucleotide di‑P‑sugar epimerase or dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	905,792	0	A	G	100.0%	871.1 / NA	246	V74A (GTG→GCG)	b0868	putative nucleotide di‑P‑sugar epimerase or dehydratase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (126/120); total (126/120)

Only 100 of 247 total aligned reads displayed.

CGAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCACTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTG  >  NC_000913/905702‑905881

 gAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCtt                                                                                        >  2:772007/1‑93 (MQ=255)

 gAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCtt                                                                                        >  1:5928534/1‑93 (MQ=255)

 gAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCtt                                                                                        <  2:4216208/93‑1 (MQ=255)

  aaCGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCttt                                                                                       <  2:3999895/93‑1 (MQ=255)

   aCGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTa                                                                                      >  1:4993544/1‑93 (MQ=255)

   aCGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTa                                                                                      <  2:2637798/93‑1 (MQ=255)

     gTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGc                                                                                    <  2:2280947/93‑1 (MQ=255)

     gTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGc                                                                                    <  2:3098153/93‑1 (MQ=255)

     gTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGc                                                                                    <  1:2324918/93‑1 (MQ=255)

     gTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGc                                                                                    >  2:5703509/1‑93 (MQ=255)

         gCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTtgt                                                                                <  1:3359299/93‑1 (MQ=255)

            aGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGtgat                                                                             >  1:4420747/1‑93 (MQ=255)

             gATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGtgatg                                                                            >  1:943409/1‑93 (MQ=255)

                 gAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAAc                                                                        >  2:4854196/1‑93 (MQ=255)

                 gAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAAc                                                                        <  2:6128798/93‑1 (MQ=255)

                 gAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAAc                                                                        >  2:1868976/1‑93 (MQ=255)

                  aaaGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAAcc                                                                       >  2:3316181/1‑93 (MQ=255)

                   aaGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCa                                                                      <  1:3709420/93‑1 (MQ=255)

                    aGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAg                                                                     <  1:4816940/93‑1 (MQ=255)

                       cTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTc                                                                  <  1:2201656/93‑1 (MQ=255)

                       cTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTc                                                                  <  1:4110969/93‑1 (MQ=255)

                         gttgtGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCgg                                                                <  2:6238614/93‑1 (MQ=255)

                          ttgtGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGt                                                               <  2:5776873/93‑1 (MQ=255)

                          gtgtgTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGt                                                               <  2:1442315/92‑1 (MQ=255)

                           tgtgTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTc                                                              <  2:3652702/93‑1 (MQ=255)

                            gtgtCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCa                                                             <  1:3282943/93‑1 (MQ=255)

                            gtgtCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCa                                                             >  2:116894/1‑93 (MQ=255)

                             tgtCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAg                                                            <  1:819849/93‑1 (MQ=255)

                               tCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGAt                                                          <  1:4500520/93‑1 (MQ=255)

                               tCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGAt                                                          <  1:1254601/93‑1 (MQ=255)

                               tCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGAt                                                          <  1:3488484/93‑1 (MQ=255)

                                cccccAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATc                                                         >  2:3252977/1‑93 (MQ=255)

                                cccccAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATc                                                         <  1:2406888/93‑1 (MQ=255)

                                cccccAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATc                                                         <  1:1966733/93‑1 (MQ=255)

                                 ccccAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATcc                                                        <  2:3758628/93‑1 (MQ=255)

                                  cccAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATccg                                                       >  2:6011380/1‑93 (MQ=255)

                                   ccAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATccgc                                                      <  1:168687/93‑1 (MQ=255)

                                    cAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATccgcc                                                     >  1:1391139/1‑93 (MQ=255)

                                    cAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATccgcc                                                     <  2:2540871/93‑1 (MQ=255)

                                     aGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATccgccg                                                    >  2:2916862/1‑93 (MQ=255)

                                     aGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATccgccg                                                    >  1:1112335/1‑93 (MQ=255)

                                       ggTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGa                                                  <  2:3986330/93‑1 (MQ=255)

                                          gAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACa                                               >  2:2030470/1‑93 (MQ=255)

                                           aGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACaa                                              <  1:2489366/93‑1 (MQ=255)

                                           aGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACaa                                              >  1:652025/1‑93 (MQ=255)

                                            ggTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACaaa                                             >  2:4353652/1‑93 (MQ=255)

                                             gTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCAGTCAGATCCGCCGGAACAAAc                                            <  2:1786297/93‑1 (MQ=255)

                                              tAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAAct                                           <  2:6103242/93‑1 (MQ=255)

                                              tAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAAct                                           >  1:5123193/1‑93 (MQ=255)

                                               aaaGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAActc                                          >  1:1777342/1‑93 (MQ=255)

                                                aaGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAGCCAGCTCGGTCAGATCCGCCGGAACAAActct                                         <  2:284083/93‑1 (MQ=255)

                                                aaGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAActct                                         <  2:2006713/93‑1 (MQ=255)

                                                 aGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTg                                        >  1:2237995/1‑93 (MQ=255)

                                                 aGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTg                                        >  2:4920239/1‑93 (MQ=255)

                                                 aGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTg                                        >  2:5334906/1‑93 (MQ=255)

                                                  gCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTgc                                       <  1:1166208/93‑1 (MQ=255)

                                                     ggAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGcc                                    >  2:2154533/1‑93 (MQ=255)

                                                      gAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGccc                                   >  2:4048312/1‑93 (MQ=255)

                                                      gAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGccc                                   >  1:918110/1‑93 (MQ=255)

                                                       aGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCa                                  <  1:4706283/93‑1 (MQ=255)

                                                        gCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAt                                 >  1:285749/1‑93 (MQ=255)

                                                         cAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAtt                                <  1:3339454/93‑1 (MQ=255)

                                                          aGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAttt                               >  2:1037581/1‑93 (MQ=255)

                                                          aGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAttt                               >  1:1512890/1‑93 (MQ=255)

                                                          aGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAttt                               >  2:6042522/1‑93 (MQ=255)

                                                          aGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAttt                               >  1:552357/1‑93 (MQ=255)

                                                           gTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAtttt                              >  1:523871/1‑93 (MQ=255)

                                                              ccACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTc                           >  1:2095573/1‑93 (MQ=255)

                                                              ccACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTc                           >  1:1013137/1‑93 (MQ=255)

                                                              ccACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTc                           <  1:3172391/93‑1 (MQ=255)

                                                               cacaGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTcc                          <  1:4286587/93‑1 (MQ=255)

                                                               cacaGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTcc                          >  2:2185813/1‑93 (MQ=255)

                                                                acaGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCa                         <  1:2943909/93‑1 (MQ=255)

                                                                acaGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCa                         >  1:5685985/1‑93 (MQ=255)

                                                                acaGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCa                         >  2:4685696/1‑93 (MQ=255)

                                                                 caGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAtttttttcca                        >  2:4828769/1‑89 (MQ=255)

                                                                 caGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAg                        >  2:1587658/1‑93 (MQ=255)

                                                                    cGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCaa                     <  2:2340247/93‑1 (MQ=255)

                                                                      tATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAAtt                   >  2:3402717/1‑93 (MQ=255)

                                                                       aTCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAAttt                  <  1:5863041/93‑1 (MQ=255)

                                                                         ctaTGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGc                >  1:4055723/3‑93 (MQ=255)

                                                                         cAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGc                >  2:5253933/1‑93 (MQ=255)

                                                                          aaTGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGcc               <  1:2296512/93‑1 (MQ=255)

                                                                          aaTGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGcc               >  1:4385085/1‑93 (MQ=255)

                                                                           aTGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGccc              <  2:5133125/93‑1 (MQ=255)

                                                                           aTGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGccc              >  1:5417704/1‑93 (MQ=255)

                                                                           aTGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGccc              >  1:3641051/1‑93 (MQ=255)

                                                                            tGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCa             <  2:681678/93‑1 (MQ=255)

                                                                             gCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCAt            <  1:3802006/93‑1 (MQ=255)

                                                                              cccGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCAtt           <  1:2647982/93‑1 (MQ=255)

                                                                              cccGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCAtt           <  1:1490310/93‑1 (MQ=255)

                                                                              cccGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCGCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCAtt           <  1:3880187/93‑1 (MQ=255)

                                                                                 gcgAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGcc        <  1:6399330/93‑1 (MQ=255)

                                                                                   gAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCCGCAATTTGCCCATTGCCTc      >  1:4097418/1‑93 (MQ=255)

                                                                                    aGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCACATTTCCTct     >  1:5745972/1‑92 (MQ=255)

                                                                                     gCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGt    <  2:509474/93‑1 (MQ=255)

                                                                                     gCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGt    >  2:6245506/1‑93 (MQ=255)

                                                                                      cATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGtt   <  2:3568409/93‑1 (MQ=255)

                                                                                      cATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGtt   <  2:4425685/93‑1 (MQ=255)

                                                                                      cATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGtt   <  2:4157639/93‑1 (MQ=255)

CGAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCACTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTG  >  NC_000913/905702‑905881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCACTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCGA  >  NC_000913/905700‑905884

CGCGAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGC                                                                                             >  SRR4302534.1699371/1‑94 (MQ=60)

  CGAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTT                                                                                           >  SRR4302534.6089533/1‑94 (MQ=60)

    AACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTA                                                                                         >  SRR4302534.5128607/1‑94 (MQ=60)

       GTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCT                                                                                      <  SRR4302534.2386607/94‑1 (MQ=60)

        TTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTT                                                                                     >  SRR4302534.5132509/1‑94 (MQ=60)

        TTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTT                                                                                     <  SRR4302534.4218643/94‑1 (MQ=60)

        TTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCACGCGAGCATCGCTTTAGCTT                                                                                     >  SRR4302534.1937002/1‑94 (MQ=60)

         TAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTG                                                                                    <  SRR4302534.5314442/94‑1 (MQ=60)

          AGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGT                                                                                   >  SRR4302534.2890695/1‑94 (MQ=60)

          AGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGT                                                                                   >  SRR4302534.5002940/1‑94 (MQ=60)

           GCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTG                                                                                  <  SRR4302534.3449275/94‑1 (MQ=60)

           GCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTG                                                                                  <  SRR4302534.586613/94‑1 (MQ=60)

            CCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGA                                                                                 >  SRR4302534.2642349/1‑94 (MQ=60)

             CAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGAT                                                                                <  SRR4302534.1211924/94‑1 (MQ=60)

             CAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGAT                                                                                >  SRR4302534.4540096/1‑94 (MQ=60)

             CAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGAT                                                                                >  SRR4302534.5440119/1‑94 (MQ=60)

              AGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATG                                                                               >  SRR4302534.967410/1‑94 (MQ=60)

                 TCGAAAGCCTGTTGTGTCACCCCCCGTGAGGTATAGCTGGAGCAGTGCAACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAA                                                                            >  SRR4302534.2849097/1‑94 (MQ=60)

                  CGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAACC                                                                           >  SRR4302534.792247/1‑94 (MQ=60)

                  CGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAAC                                                                           >  SRR4302534.2294866/1‑94 (MQ=60)

                     AAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAG                                                                        <  SRR4302534.3809139/94‑1 (MQ=60)

                     AAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAG                                                                        >  SRR4302534.3218435/1‑94 (MQ=60)

                      AGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGC                                                                       >  SRR4302534.6171310/1‑94 (MQ=60)

                      AGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGC                                                                       <  SRR4302534.4947690/94‑1 (MQ=60)

                      AGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGC                                                                       <  SRR4302534.1291923/94‑1 (MQ=60)

                       GCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCT                                                                      >  SRR4302534.976090/1‑94 (MQ=60)

                       GCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCT                                                                      >  SRR4302534.4271961/1‑94 (MQ=60)

                        CCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTC                                                                     <  SRR4302534.6017297/94‑1 (MQ=60)

                        CCTGTTGTGTCCCCCAGGGAGAGGTAAAGCTGGAGCCGTGCCACAGCGTATCAATGCCCGCGCGCATCGCTTTAGCTTGTGATGAAACCAGCTG                                                                     >  SRR4302534.2128245/1‑94 (MQ=60)

                         CTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCG                                                                    >  SRR4302534.4051458/1‑94 (MQ=60)

                         CTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCG                                                                    <  SRR4302534.4221563/94‑1 (MQ=60)

                         CTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCG                                                                    <  SRR4302534.2345151/94‑1 (MQ=60)

                         CTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCG                                                                    <  SRR4302534.2259911/94‑1 (MQ=60)

                         CTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCG                                                                    >  SRR4302534.126140/1‑94 (MQ=60)

                          TGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGG                                                                   >  SRR4302534.5226888/1‑94 (MQ=60)

                          TGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGG                                                                   >  SRR4302534.1445781/1‑94 (MQ=60)

                           GTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGT                                                                  <  SRR4302534.3548778/94‑1 (MQ=60)

                           GTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGT                                                                  >  SRR4302534.3695409/1‑94 (MQ=60)

                              GTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAG                                                               <  SRR4302534.3370446/94‑1 (MQ=60)

                               TGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGA                                                              >  SRR4302534.417578/1‑94 (MQ=60)

                               TGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGA                                                              >  SRR4302534.3172103/1‑94 (MQ=60)

                               TGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGA                                                              >  SRR4302534.1924587/1‑94 (MQ=60)

                               TGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGA                                                              <  SRR4302534.840465/94‑1 (MQ=60)

                                 TCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATC                                                            <  SRR4302534.3582245/94‑1 (MQ=60)

                                 TCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATC                                                            <  SRR4302534.1287668/94‑1 (MQ=60)

                                 TCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATC                                                            <  SRR4302534.4622338/94‑1 (MQ=60)

                                  CCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCC                                                           <  SRR4302534.2470853/94‑1 (MQ=60)

                                  CCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCC                                                           <  SRR4302534.2018212/94‑1 (MQ=60)

                                  CCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATCCCCGCGAGCATCACTTTAGCTTGTGATGAAACCAGATCGGTCAGATCC                                                           <  SRR4302534.2261492/94‑1 (MQ=60)

                                    CCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGCTGAAACCAGCTCGGTCAGATCCGC                                                         >  SRR4302534.4523246/1‑94 (MQ=60)

                                     CCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCC                                                        <  SRR4302534.173123/94‑1 (MQ=60)

                                     CCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCC                                                        >  SRR4302534.1427757/1‑94 (MQ=60)

                                      CAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCG                                                       >  SRR4302534.1141370/1‑94 (MQ=60)

                                      CAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCG                                                       >  SRR4302534.253574/1‑94 (MQ=60)

                                       AGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGG                                                      >  SRR4302534.3416775/1‑94 (MQ=60)

                                            GAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAA                                                 >  SRR4302534.667864/1‑94 (MQ=60)

                                             AGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAA                                                >  SRR4302534.5807411/1‑94 (MQ=60)

                                             AGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAA                                                <  SRR4302534.4361980/94‑1 (MQ=60)

                                             AGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAA                                                <  SRR4302534.2555493/94‑1 (MQ=60)

                                               GTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACT                                              >  SRR4302534.5261525/1‑94 (MQ=60)

                                                TAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTC                                             >  SRR4302534.1823495/1‑94 (MQ=60)

                                                 AAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCT                                            <  SRR4302534.5636129/94‑1 (MQ=60)

                                                 AAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCT                                            <  SRR4302534.3946497/94‑1 (MQ=60)

                                                 AAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCT                                            >  SRR4302534.3821885/1‑94 (MQ=60)

                                                  AAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTG                                           <  SRR4302534.1583230/94‑1 (MQ=60)

                                                  AAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTG                                           <  SRR4302534.4198009/94‑1 (MQ=60)

                                                  AAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTG                                           >  SRR4302534.2297301/1‑94 (MQ=60)

                                                   AGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGC                                          >  SRR4302534.1552328/1‑94 (MQ=60)

                                                   AGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGC                                          <  SRR4302534.4561161/94‑1 (MQ=60)

                                                    GCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCG                                         <  SRR4302534.1196836/94‑1 (MQ=60)

                                                       GGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCC                                      >  SRR4302534.3742777/1‑94 (MQ=60)

                                                       GGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCC                                      >  SRR4302534.941482/1‑94 (MQ=60)

                                                        GAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCA                                     >  SRR4302534.3576973/1‑94 (MQ=60)

                                                        GAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCA                                     <  SRR4302534.1112453/94‑1 (MQ=60)

                                                        GAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCA                                     <  SRR4302534.5814809/94‑1 (MQ=60)

                                                         AGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAT                                    >  SRR4302534.293141/1‑94 (MQ=60)

                                                         AGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCAT                                    <  SRR4302534.4834045/94‑1 (MQ=60)

                                                           CAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTT                                  <  SRR4302534.441051/94‑1 (MQ=60)

                                                           CAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTT                                  >  SRR4302534.5550870/1‑94 (MQ=60)

                                                           CAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTT                                  >  SRR4302534.1552665/1‑94 (MQ=60)

                                                           CAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTT                                  >  SRR4302534.565973/1‑94 (MQ=60)

                                                           CAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTT                                  >  SRR4302534.5948666/1‑94 (MQ=60)

                                                           CAGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTT                                  <  SRR4302534.3428788/94‑1 (MQ=60)

                                                            AGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTT                                 >  SRR4302534.536891/1‑94 (MQ=60)

                                                            AGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTT                                 <  SRR4302534.2222593/94‑1 (MQ=60)

                                                            AGTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCCTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACctagtggccatttt                                 >  SRR4302534.1329088/1‑80 (MQ=60)

                                                             GTGCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTT                                <  SRR4302534.720867/94‑1 (MQ=60)

                                                               GCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTC                              >  SRR4302534.1039209/1‑94 (MQ=60)

                                                               GCCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTC                              >  SRR4302534.2150549/1‑94 (MQ=60)

                                                                CCACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCC                             <  SRR4302534.3256111/94‑1 (MQ=60)

                                                                 CACAGCGTATCAATGCCCGCGAGCATCGCTTTTGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGCACCAACTCTGCGCCCATTTTTTCtt                            >  SRR4302534.6126673/1‑92 (MQ=60)

                                                                 CACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCA                            >  SRR4302534.5839969/1‑94 (MQ=60)

                                                                 CACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCA                            <  SRR4302534.4402713/94‑1 (MQ=60)

                                                                  ACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAG                           <  SRR4302534.3021158/94‑1 (MQ=60)

                                                                  ACAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAG                           <  SRR4302534.4562692/94‑1 (MQ=60)

                                                                   CAGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGC                          <  SRR4302534.2374015/94‑1 (MQ=60)

                                                                    AGCGTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCA                         >  SRR4302534.4664407/1‑94 (MQ=60)

                                                                       GTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATT                      >  SRR4302534.225621/1‑94 (MQ=60)

                                                                       GTATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATT                      <  SRR4302534.168670/94‑1 (MQ=60)

                                                                        TATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTT                     >  SRR4302534.4861652/1‑94 (MQ=60)

                                                                        TATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTT                     <  SRR4302534.1501459/94‑1 (MQ=60)

                                                                        TATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTT                     <  SRR4302534.6043271/94‑1 (MQ=60)

                                                                         ATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTG                    <  SRR4302534.6022229/94‑1 (MQ=60)

                                                                         ATCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTG                    >  SRR4302534.883256/1‑94 (MQ=60)

                                                                          TCTATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGC                   >  SRR4302534.4164499/1‑94 (MQ=60)

                                                                          TCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGC                   >  SRR4302534.3404609/1‑94 (MQ=60)

                                                                          TCAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGC                   >  SRR4302534.3915054/1‑94 (MQ=60)

                                                                           CAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCC                  >  SRR4302534.4503306/1‑94 (MQ=60)

                                                                           CAATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCC                  <  SRR4302534.1189631/94‑1 (MQ=60)

                                                                            AATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCC                 >  SRR4302534.3738909/1‑94 (MQ=60)

                                                                            AATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCC                 >  SRR4302534.5563460/1‑94 (MQ=60)

                                                                            AATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCC                 <  SRR4302534.2357473/94‑1 (MQ=60)

                                                                            AATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCC                 >  SRR4302534.3433528/1‑94 (MQ=60)

                                                                            AATGCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCC                 >  SRR4302534.1820937/1‑94 (MQ=60)

                                                                               GCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCCGCAATTTGCCCATT              >  SRR4302534.6620258/1‑94 (MQ=60)

                                                                               GCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATT              <  SRR4302534.3904084/94‑1 (MQ=60)

                                                                               GCCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATT              >  SRR4302534.2954657/1‑94 (MQ=60)

                                                                                ccgacaAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTG             <  SRR4302534.5543635/88‑1 (MQ=60)

                                                                                CCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTG             <  SRR4302534.1529508/94‑1 (MQ=60)

                                                                                CCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTG             <  SRR4302534.2718003/94‑1 (MQ=60)

                                                                                CCCGCGAGCATCGCTTTAGCTTGTGATGAAACCAGCGCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTG             <  SRR4302534.3984380/94‑1 (MQ=60)

                                                                                   GCGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCT          <  SRR4302534.6572140/94‑1 (MQ=60)

                                                                                    CGAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCCGCAATTTGCCCATTGCCTC         >  SRR4302534.4207566/1‑94 (MQ=60)

                                                                                     GAGCATCGCTTTATCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAACCTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCG        <  SRR4302534.4851928/94‑1 (MQ=60)

                                                                                     GAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCG        >  SRR4302534.2347100/1‑94 (MQ=60)

                                                                                     GAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCG        <  SRR4302534.2429659/94‑1 (MQ=60)

                                                                                     GAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCG        >  SRR4302534.380263/1‑94 (MQ=60)

                                                                                     GAGCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCACATTTCCTCT        >  SRR4302534.5901769/1‑94 (MQ=60)

                                                                                      AGCATCCCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGT       >  SRR4302534.5475868/1‑94 (MQ=60)

                                                                                       GCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTT      <  SRR4302534.955830/94‑1 (MQ=60)

                                                                                       GCATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTT      <  SRR4302534.2096900/94‑1 (MQ=60)

                                                                                        CATCGCTTTGGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAATCTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTG     <  SRR4302534.2446194/94‑1 (MQ=60)

                                                                                        CATCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTG     >  SRR4302534.3303258/1‑94 (MQ=60)

                                                                                          TCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCG   <  SRR4302534.239943/94‑1 (MQ=60)

                                                                                          TCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCG   <  SRR4302534.2508332/94‑1 (MQ=60)

                                                                                          TCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCG   >  SRR4302534.4927820/1‑94 (MQ=60)

                                                                                          TCGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCG   >  SRR4302534.962365/1‑94 (MQ=60)

                                                                                          TCGCTTTAGCTTGCGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCGGCGCCCATCTTTTCCAGCAATTTGCACATTGCCTCGTTGCG   <  SRR4302534.1109075/94‑1 (MQ=60)

                                                                                           CGCTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCGC  >  SRR4302534.1148048/1‑94 (MQ=60)

CGCGAACGTTAGCCAGATCGAAAGCCTGTTGTGTCCCCCAGGGTGAGGTAAAGCTGGAGCAGTGCCACAGCGTATCAATGCCCGCGAGCATCACTTTAGCTTGTGATGAAACCAGCTCGGTCAGATCCGCCGGAACAAACTCTGCGCCCATTTTTTCCAGCAATTTGCCCATTGCCTCGTTGCGA  >  NC_000913/905700‑905884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`