Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 914,422 A→G intergenic (‑294/+153) ybjE ← / ← aqpZ putative surface protein/transmembrane water channel

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913914,4220AG100.0% 514.2 / NA 176intergenic (‑294/+153)ybjE/aqpZputative surface protein/transmembrane water channel
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (89/87);  total (89/87)

Only 100 of 189 total aligned reads displayed.

GATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGA  >  NC_000913/914332‑914511
                                                                                          |                                                                                         
gATGTTCCCTCGCCCCCGCCCGGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCggg                                                                                         <  2:45718/93‑1 (MQ=11)
gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCggg                                                                                         >  1:4411883/1‑93 (MQ=18)
gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCggg                                                                                         >  1:4537141/1‑93 (MQ=18)
gATGTCCCCCCGCGCCCGCCCGGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCggg                                                                                         <  1:4740626/93‑1 (MQ=11)
 gtgtgACCCCGCGCCCGGCCGGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCgggg                                                                                        <  2:737349/92‑1 (MQ=11)
  tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGgggg                                                                                       >  1:3371251/1‑93 (MQ=18)
    ttcccTCGCGCCGGCCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggc                                                                                     <  2:6456865/90‑1 (MQ=11)
     tcccTCGACCCCGCCGCGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcg                                                                                    <  1:2402872/91‑1 (MQ=11)
     tACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcg                                                                                    >  1:2145902/1‑93 (MQ=18)
      aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcgg                                                                                   >  2:4179087/1‑93 (MQ=18)
       ccgcgcgCCGGCCCGGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcggc                                                                                  <  1:4137030/90‑1 (MQ=11)
       ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcggg                                                                                  >  2:3838843/1‑92 (MQ=18)
         tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcggcgg                                                                                >  1:1281687/1‑93 (MQ=18)
         tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcggcgg                                                                                >  2:142161/1‑93 (MQ=18)
          cgcgCCCGACCGGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGggcggcggc                                                                               <  2:3525361/93‑1 (MQ=255)
             gcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGAt                                                                            >  2:5332165/1‑93 (MQ=18)
              cccgcccgGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGAtt                                                                           <  2:2799963/93‑1 (MQ=11)
              cccGCCCCGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGAtt                                                                           <  1:5753470/93‑1 (MQ=11)
              cccGACCCGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGAtt                                                                           <  2:6432129/93‑1 (MQ=255)
               ccggccggGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTg                                                                          <  1:1528050/93‑1 (MQ=255)
               ccGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTg                                                                          >  2:4937997/1‑93 (MQ=21)
                 gccccGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGgc                                                                        <  2:2498578/91‑1 (MQ=255)
                  aCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGgcc                                                                       >  1:1065353/1‑93 (MQ=21)
                   cccGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGgccg                                                                      >  1:1211442/1‑93 (MQ=18)
                      ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGGGGCGGCGATTGGCAGccc                                                                   >  2:3598379/1‑93 (MQ=255)
                       gTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGcccc                                                                  >  1:4108710/1‑93 (MQ=21)
                        tAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGccccc                                                                 <  2:4843937/93‑1 (MQ=18)
                          gCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTg                                                               >  1:3140741/1‑93 (MQ=21)
                          gCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTg                                                               <  2:401886/93‑1 (MQ=18)
                            cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTgcg                                                             >  1:3052411/1‑93 (MQ=18)
                            cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTgcg                                                             <  2:3008026/93‑1 (MQ=18)
                            cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTgcg                                                             >  1:3003584/1‑93 (MQ=21)
                             gTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTgcgc                                                            >  2:5228232/1‑93 (MQ=18)
                             gTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTgcgc                                                            <  1:3897067/93‑1 (MQ=18)
                              tAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTgcgcg                                                           >  1:4296692/1‑93 (MQ=18)
                                aGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCt                                                         >  2:6336952/1‑93 (MQ=18)
                                 gggATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTc                                                        >  1:818056/1‑93 (MQ=21)
                                  ggATAAGTCGAGGGCACCGCGCAGGGGCGATTTTGTTCGCCAGAGCCGGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTcc                                                       <  1:5565924/93‑1 (MQ=255)
                                   gATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCt                                                      <  2:2063687/93‑1 (MQ=18)
                                   gATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCt                                                      <  1:751279/93‑1 (MQ=18)
                                   gATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCt                                                      <  2:888534/93‑1 (MQ=18)
                                   gATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCt                                                      <  1:2477003/93‑1 (MQ=18)
                                      aggTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTgc                                                   <  1:5783018/91‑1 (MQ=12)
                                        gTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTgcgc                                                 >  1:4604206/1‑93 (MQ=17)
                                        gTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTgcgc                                                 >  2:6198832/1‑93 (MQ=17)
                                         tCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGcc                                                >  1:4593261/1‑93 (MQ=14)
                                               gCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGc                                          <  1:1800237/93‑1 (MQ=17)
                                               gCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGc                                          <  1:5953854/93‑1 (MQ=17)
                                               gCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGc                                          >  2:1501872/1‑93 (MQ=17)
                                                 aCCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCaa                                        >  1:2807559/1‑93 (MQ=21)
                                                  ccGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAat                                       >  1:1909666/1‑93 (MQ=25)
                                                  ccGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAat                                       >  1:2431001/1‑93 (MQ=25)
                                                   cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAata                                      <  1:5002807/93‑1 (MQ=37)
                                                    gcgcAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAatat                                     >  1:3810553/1‑93 (MQ=255)
                                                    gcgcAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAatat                                     <  2:1315296/93‑1 (MQ=255)
                                                    gcgcAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAagat                                     >  1:2948926/1‑93 (MQ=255)
                                                      gcAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGt                                   <  2:5287869/93‑1 (MQ=255)
                                                         gcggcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGc                                >  2:1455996/1‑93 (MQ=255)
                                                         gcggcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGc                                <  2:1077832/93‑1 (MQ=255)
                                                         gcggcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGc                                <  1:5325036/93‑1 (MQ=255)
                                                          cggcgATTTTGTTCGCGAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCt                               <  2:1762542/93‑1 (MQ=255)
                                                           ggcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt                              >  1:2735404/1‑93 (MQ=255)
                                                           ggcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt                              <  2:6051099/93‑1 (MQ=255)
                                                           ggcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt                              <  2:4548934/93‑1 (MQ=255)
                                                            gcgATTTTGTTCGCCAGAGGCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTa                             >  1:6238040/1‑93 (MQ=255)
                                                            gcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTa                             <  1:4270383/93‑1 (MQ=255)
                                                            gcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTa                             <  2:789573/93‑1 (MQ=255)
                                                            gcgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGAGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTa                             >  1:1051353/1‑93 (MQ=255)
                                                             cgATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAg                            >  1:6243675/1‑93 (MQ=255)
                                                              gATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGc                           >  2:5167610/1‑93 (MQ=255)
                                                               aTTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCt                          <  2:315663/93‑1 (MQ=255)
                                                               aTTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCt                          >  2:1313616/1‑93 (MQ=255)
                                                               aTTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGAATGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCt                          >  2:3439496/1‑93 (MQ=255)
                                                                ttttGTTCTCCAGAGCCGGGGGGTGCGGGGGGGGCGGGGGATTGCCCCCCCCCTGCGCGCTCCTTGCGCAAGTGGCAATATGTTGCTTAGCTc                         <  2:4456529/93‑1 (MQ=17)
                                                                      tCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaaa                   <  2:2636614/93‑1 (MQ=255)
                                                                      tCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaaa                   >  2:2160504/1‑93 (MQ=255)
                                                                      tCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaaa                   <  2:1997556/93‑1 (MQ=255)
                                                                       cGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAg                  <  1:606324/93‑1 (MQ=255)
                                                                          cAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAg               <  1:5655180/93‑1 (MQ=255)
                                                                           agagCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCGAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgc              <  2:823303/93‑1 (MQ=255)
                                                                           agagCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgc              <  1:540376/93‑1 (MQ=255)
                                                                            gagCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcg             >  1:4064447/1‑93 (MQ=255)
                                                                            gagCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcg             <  1:1609820/93‑1 (MQ=255)
                                                                            gagCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcg             >  2:5245948/1‑93 (MQ=255)
                                                                            gagCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCAAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcg             <  2:1868269/93‑1 (MQ=255)
                                                                             agCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcgc            <  1:3737777/93‑1 (MQ=255)
                                                                             agCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcgc            <  2:2742091/93‑1 (MQ=255)
                                                                              gCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGca           >  2:6369554/1‑93 (MQ=255)
                                                                                 cGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGcaaca        <  2:5695185/93‑1 (MQ=255)
                                                                                 cGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGcaaca        >  1:2597670/1‑93 (MQ=255)
                                                                                  gggggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGcaacaa       >  1:982102/1‑93 (MQ=255)
                                                                                  gggggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGcaacaa       >  1:3115201/1‑93 (MQ=255)
                                                                                   ggggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAg      >  2:5560616/1‑93 (MQ=255)
                                                                                   ggggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAg      >  1:495631/1‑93 (MQ=255)
                                                                                    gggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGATCGCAACAAga     <  1:5090687/93‑1 (MQ=255)
                                                                                     ggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgat    >  2:6301802/1‑93 (MQ=255)
                                                                                     ggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgat    >  2:5454032/1‑93 (MQ=255)
                                                                                     ggTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgat    <  2:770802/93‑1 (MQ=255)
                                                                                      gTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCGAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgatg   <  2:2183466/93‑1 (MQ=255)
                                                                                       tGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgatga  <  1:6390628/93‑1 (MQ=255)
                                                                                          |                                                                                         
GATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGA  >  NC_000913/914332‑914511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAA  >  NC_000913/914329‑914515
                                                                                             |                                                                                             
AGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCG                                                                                               >  SRR4302534.5556518/1‑94 (MQ=10)
  GGTTGTTCCCGCGCGCCCGCCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGG                                                                                             <  SRR4302534.6319067/94‑1 (MQ=8)
  GGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGG                                                                                             >  SRR4302534.4530968/1‑94 (MQ=10)
  GGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGG                                                                                             >  SRR4302534.4660106/1‑94 (MQ=10)
   gatgtccccccgcgcccgcccggtTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGG                                                                                            <  SRR4302534.4869318/70‑1 (MQ=11)
   GATGTTCCCTCGCGCCCGACCCGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGG                                                                                            <  SRR4302534.3093084/94‑1 (MQ=9)
    ATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGG                                                                                           >  SRR4302534.3461575/1‑94 (MQ=10)
      gttccgccccccccgaccctttacCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGC                                                                                         <  SRR4302534.4993430/70‑1 (MQ=11)
      GTTACCGCGCACCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGC                                                                                         <  SRR4302534.6176549/94‑1 (MQ=9)
       tcccccccccccgaccccgtTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCG                                                                                        <  SRR4302534.821200/74‑1 (MQ=11)
       TTACCTCGCGCCCGCCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGAGAGGGGGGCG                                                                                        >  SRR4302534.3034128/1‑94 (MQ=8)
       TTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCG                                                                                        >  SRR4302534.2202533/1‑94 (MQ=10)
        tccctcgaccccgccgcgtTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGG                                                                                       <  SRR4302534.2466736/75‑1 (MQ=11)
         cccccccccccgcccggtTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGC                                                                                      <  SRR4302534.4552432/76‑1 (MQ=11)
          ccgcgcgccggcccggtTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCG                                                                                     <  SRR4302534.4248669/77‑1 (MQ=11)
          CCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCG                                                                                     >  SRR4302534.4217791/1‑94 (MQ=10)
           CTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGG                                                                                    >  SRR4302534.4237897/1‑94 (MQ=10)
           CTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGG                                                                                    >  SRR4302534.1315422/1‑94 (MQ=10)
           CTCCCGCCCACCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGG                                                                                    <  SRR4302534.3527245/94‑1 (MQ=8)
           CGCGCCCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGG                                                                                    <  SRR4302534.4457448/94‑1 (MQ=9)
            ccccccccgccctgtTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGC                                                                                   <  SRR4302534.2274675/79‑1 (MQ=10)
              GCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGA                                                                                 >  SRR4302534.4911444/1‑94 (MQ=10)
                 CCCGCCCCGTTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTG                                                                              <  SRR4302534.5909503/94‑1 (MQ=9)
                 CCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTG                                                                              >  SRR4302534.4748652/1‑94 (MQ=10)
                  CCGGCCGGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGG                                                                             <  SRR4302534.1568158/94‑1 (MQ=9)
                    gcccaGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGTGGGCGGCGGCGATTGGCC                                                                           <  SRR4302534.4223096/89‑1 (MQ=9)
                    GACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCC                                                                           >  SRR4302534.3421462/1‑94 (MQ=10)
                    GACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCC                                                                           >  SRR4302534.1092973/1‑94 (MQ=10)
                     ACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCG                                                                          >  SRR4302534.1243322/1‑94 (MQ=10)
                         GGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCC                                                                      >  SRR4302534.4219226/1‑94 (MQ=10)
                          GTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCC                                                                     >  SRR4302534.4558891/1‑94 (MQ=10)
                            AGCGGTAGGGGATAGGTCGAGGGCACCGCGCGGCGGCGATTTTGTTCGCCAGAGCCGGGGGGTGGGGGGGGCGGCGGCGATTGGCCGCCCCCTG                                                                   <  SRR4302534.1374960/94‑1 (MQ=5)
                            AGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTG                                                                   <  SRR4302534.1808216/94‑1 (MQ=10)
                            AGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTG                                                                   >  SRR4302534.3223349/1‑94 (MQ=10)
                            AGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTG                                                                   >  SRR4302534.1114562/1‑94 (MQ=10)
                              CCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCG                                                                 >  SRR4302534.3132494/1‑94 (MQ=10)
                              CCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCG                                                                 >  SRR4302534.3082158/1‑94 (MQ=10)
                                GTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCG                                                               >  SRR4302534.4413116/1‑94 (MQ=10)
                                GTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCG                                                               <  SRR4302534.4001648/94‑1 (MQ=10)
                                 TAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGC                                                              >  SRR4302534.5931579/1‑94 (MQ=10)
                                  AAGGGATAAGTCGAGGGCACCGCGCAGCGGCGCTTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGac                                                             >  SRR4302534.6021482/1‑92 (MQ=9)
                                   AGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTC                                                            >  SRR4302534.838628/1‑94 (MQ=10)
                                   AGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTC                                                            >  SRR4302534.5586780/1‑94 (MQ=10)
                                   AGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTC                                                            >  SRR4302534.1900738/1‑94 (MQ=10)
                                     GGATAAGTCGAGGGCACCGCGCAGGGGCGATTTTGTTCGCCAGAGCCGGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCT                                                          <  SRR4302534.5716226/94‑1 (MQ=9)
                                      GATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTT                                                         <  SRR4302534.769892/94‑1 (MQ=10)
                                      GATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTT                                                         <  SRR4302534.2542825/94‑1 (MQ=10)
                                      GATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTT                                                         <  SRR4302534.4308424/94‑1 (MQ=10)
                                       ATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTG                                                        <  SRR4302534.4135809/94‑1 (MQ=10)
                                       ATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTG                                                        <  SRR4302534.6556696/94‑1 (MQ=10)
                                         AGGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCG                                                      <  SRR4302534.5939890/94‑1 (MQ=2)
                                         AGGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCG                                                      <  SRR4302534.3994377/94‑1 (MQ=2)
                                          AGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGC                                                     >  SRR4302534.2141767/1‑94 (MQ=5)
                                          AGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGC                                                     >  SRR4302534.4729151/1‑94 (MQ=5)
                                           GTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCC                                                    >  SRR4302534.4717922/1‑94 (MQ=2)
                                             CGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGTGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAG                                                  <  SRR4302534.1597541/94‑1 (MQ=0)
                                             CGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAG                                                  <  SRR4302534.2918261/94‑1 (MQ=0)
                                                GGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGG                                               >  SRR4302534.5135693/1‑94 (MQ=0)
                                                  GCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCA                                             <  SRR4302534.1591166/94‑1 (MQ=5)
                                                  GCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCA                                             <  SRR4302534.1846983/94‑1 (MQ=5)
                                                  GCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCA                                             <  SRR4302534.6115526/94‑1 (MQ=5)
                                                  GCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCA                                             <  SRR4302534.3159932/94‑1 (MQ=5)
                                                   CACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAA                                            >  SRR4302534.2881392/1‑94 (MQ=7)
                                                    ACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAAT                                           >  SRR4302534.1959509/1‑94 (MQ=10)
                                                    ACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAAT                                           >  SRR4302534.2495627/1‑94 (MQ=10)
                                                     CCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATA                                          >  SRR4302534.2549414/1‑94 (MQ=12)
                                                     CCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATA                                          <  SRR4302534.2521476/94‑1 (MQ=12)
                                                      CGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATAT                                         <  SRR4302534.5138055/94‑1 (MQ=15)
                                                      CGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATAT                                         >  SRR4302534.3912876/1‑94 (MQ=15)
                                                      CGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAAGAT                                         >  SRR4302534.3026284/1‑94 (MQ=7)
                                                            GCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCT                                   >  SRR4302534.471985/1‑94 (MQ=33)
                                                            GCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCT                                   <  SRR4302534.5468670/94‑1 (MQ=33)
                                                            GCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCT                                   <  SRR4302534.1247019/94‑1 (MQ=33)
                                                             CGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTT                                  >  SRR4302534.2807510/1‑94 (MQ=35)
                                                              GGCGATTTTGTTCGCCAGAGGCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTA                                 >  SRR4302534.6407332/1‑94 (MQ=36)
                                                              GGCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGAGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTA                                 >  SRR4302534.1078573/1‑94 (MQ=36)
                                                               GCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAG                                >  SRR4302534.6413061/1‑94 (MQ=40)
                                                               GCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAG                                <  SRR4302534.731087/94‑1 (MQ=40)
                                                               GCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAG                                >  SRR4302534.6266580/1‑94 (MQ=40)
                                                               GCGATTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAG                                <  SRR4302534.4385812/94‑1 (MQ=40)
                                                                   TTTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCA                            <  SRR4302534.5484809/94‑1 (MQ=50)
                                                                    TTTGTTCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCAT                           >  SRR4302534.1353629/1‑94 (MQ=53)
                                                                         TCGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAG                      >  SRR4302534.2328055/1‑94 (MQ=60)
                                                                          CGCCAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGG                     <  SRR4302534.621079/94‑1 (MQ=60)
                                                                           GCCAGAGCCCGGGGGGGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGA                    <  SRR4302534.5823019/94‑1 (MQ=60)
                                                                             CAGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGC                  <  SRR4302534.5808278/94‑1 (MQ=60)
                                                                              AGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCG                 <  SRR4302534.553749/94‑1 (MQ=60)
                                                                              AGAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCG                 >  SRR4302534.4173489/1‑94 (MQ=60)
                                                                               GAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGC                <  SRR4302534.5203367/94‑1 (MQ=60)
                                                                               GAGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGC                <  SRR4302534.1651848/94‑1 (MQ=60)
                                                                                AGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCA               <  SRR4302534.2793085/94‑1 (MQ=60)
                                                                                AGCCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCA               <  SRR4302534.3838182/94‑1 (MQ=60)
                                                                                AGCCCGGGGGTGCGGGGGGCGGCGGCGATTGCCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCA               <  SRR4302534.5720046/94‑1 (MQ=60)
                                                                                  CCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAAC             >  SRR4302534.4699017/1‑94 (MQ=60)
                                                                                  CCCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAAC             <  SRR4302534.2875616/94‑1 (MQ=60)
                                                                                   CCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACA            <  SRR4302534.2972761/94‑1 (MQ=60)
                                                                                   CCGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACA            >  SRR4302534.2666417/1‑94 (MQ=60)
                                                                                    CGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAA           >  SRR4302534.1007171/1‑94 (MQ=60)
                                                                                    CGGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAA           >  SRR4302534.3197119/1‑94 (MQ=60)
                                                                                     GGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAG          >  SRR4302534.385834/1‑94 (MQ=60)
                                                                                     GGGGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAG          >  SRR4302534.507998/1‑94 (MQ=60)
                                                                                       GGGTGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGATCGCAACAAGAT        <  SRR4302534.5228093/94‑1 (MQ=60)
                                                                                        GGTGGGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCTGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATG       <  SRR4302534.4900294/94‑1 (MQ=60)
                                                                                          TGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGAT     <  SRR4302534.6563239/94‑1 (MQ=60)
                                                                                          TGCGGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGAT     <  SRR4302534.824115/94‑1 (MQ=60)
                                                                                            CGGGGGGCGGGGGCGATTCGACTCCCCCTGCGCGCTACTTTCGCCAGTAGCAATATGTTGCTTAGCTCATGGAAGGAGCGCAACAAGATGATGA   >  SRR4302534.3781438/1‑94 (MQ=60)
                                                                                             GGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAATATGATGAA  <  SRR4302534.3794117/94‑1 (MQ=60)
                                                                                             GGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAA  <  SRR4302534.571371/94‑1 (MQ=60)
                                                                                             GGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAA  >  SRR4302534.671848/1‑94 (MQ=60)
                                                                                             GGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAA  >  SRR4302534.693633/1‑94 (MQ=60)
                                                                                             GGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAA  >  SRR4302534.254572/1‑94 (MQ=60)
                                                                                             |                                                                                             
AGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAA  >  NC_000913/914329‑914515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑