Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,053,820	T→C	T518A (ACC→GCC)	torS ←	TorS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,053,820	0	T	C	100.0%	826.0 / NA	236	T518A (ACC→GCC)	torS	TorS
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/125); total (111/125)

Only 100 of 242 total aligned reads displayed.

CGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGTACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATAT  >  NC_000913/1053730‑1053909

cGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCAc                                                                                         <  1:4247255/93‑1 (MQ=255)

  cccATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACtt                                                                                       <  1:5373142/93‑1 (MQ=255)

  cccATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACtt                                                                                       >  2:1502375/1‑93 (MQ=255)

  cccATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACtt                                                                                       <  2:3020373/93‑1 (MQ=255)

  cccATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACtt                                                                                       >  2:5078843/1‑93 (MQ=255)

    cATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTc                                                                                     <  1:4020206/93‑1 (MQ=255)

    cATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTc                                                                                     <  2:494850/93‑1 (MQ=255)

    cATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTc                                                                                     <  2:5222937/93‑1 (MQ=255)

     aTTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTcc                                                                                    >  2:5489968/1‑93 (MQ=255)

     aTTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTcc                                                                                    >  1:996902/1‑93 (MQ=255)

      ttAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTCATTGCAGGGCACTTTCca                                                                                   >  2:5774960/1‑93 (MQ=255)

       tAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCcag                                                                                  <  1:5328494/93‑1 (MQ=255)

       tAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCcag                                                                                  >  2:5977172/1‑93 (MQ=255)

         aCGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCcagca                                                                                <  1:6218047/93‑1 (MQ=255)

           gcgcACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCagcagc                                                                              >  1:6397999/1‑93 (MQ=255)

            cgcACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCg                                                                             <  1:1443967/93‑1 (MQ=255)

            cgcACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCg                                                                             <  2:4135781/93‑1 (MQ=255)

             gcACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCgg                                                                            <  1:4165136/93‑1 (MQ=255)

             gcACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCgg                                                                            >  2:718421/1‑93 (MQ=255)

              cACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCggg                                                                           >  1:1128618/1‑93 (MQ=255)

                  gCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGcgcg                                                                       >  1:4675998/1‑93 (MQ=255)

                  gCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGcgcg                                                                       >  2:2005140/1‑93 (MQ=255)

                    atatCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGt                                                                     <  1:1095257/93‑1 (MQ=255)

                     tatCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGtt                                                                    <  1:2797704/93‑1 (MQ=255)

                       tcatcGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCa                                                                  >  2:3087353/1‑93 (MQ=255)

                       tcatcGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCa                                                                  >  2:311196/1‑93 (MQ=255)

                        catcGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCaa                                                                 <  1:3451333/93‑1 (MQ=255)

                        catcAGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTcca                                                                 >  1:2484008/1‑91 (MQ=255)

                         atcGGCAATTGCCGTTGCCAGGCGAATCGGGCGACGTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCaaa                                                                <  1:355757/93‑1 (MQ=255)

                            ggCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAggg                                                             >  2:5930723/1‑93 (MQ=255)

                            ggCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAggg                                                             <  1:2241347/93‑1 (MQ=255)

                             gCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGc                                                            >  1:5571825/1‑93 (MQ=255)

                               aaTTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTc                                                          >  2:3471629/1‑93 (MQ=255)

                                aTTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCTGTTCAAAGGGCTCa                                                         <  1:3921247/93‑1 (MQ=255)

                                aTTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCACAGGGCTCa                                                         >  1:5178824/1‑93 (MQ=255)

                                aTTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAAGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCa                                                         >  1:1034221/1‑93 (MQ=255)

                                 ttGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCAt                                                        <  2:3195653/93‑1 (MQ=255)

                                 ttGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCAt                                                        <  1:5826420/93‑1 (MQ=255)

                                     cGTTTCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCt                                                    <  2:4318695/93‑1 (MQ=255)

                                     cGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCt                                                    <  2:4783781/93‑1 (MQ=255)

                                     cGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCt                                                    <  2:1758958/93‑1 (MQ=255)

                                         gCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGAcc                                                <  2:4391873/93‑1 (MQ=255)

                                           cAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGa                                              >  2:1202099/1‑93 (MQ=255)

                                             ggCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTTCAGGGCACTTTCCAGCAGCGGGCGCGGGTCAAAGGGCTCATCGCTGACCGaaa                                            >  1:1968728/1‑93 (MQ=255)

                                              gCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAAc                                           <  2:2406997/93‑1 (MQ=255)

                                                taaTCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACAt                                         <  2:6448050/92‑1 (MQ=255)

                                                gAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACAt                                         >  1:2150575/1‑93 (MQ=255)

                                                 aaTCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACAtt                                        >  2:5529585/1‑93 (MQ=255)

                                                 aaTCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACAtt                                        >  1:3132313/1‑93 (MQ=255)

                                                  aTCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGGAACATTc                                       <  1:6130427/93‑1 (MQ=255)

                                                  aTCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTc                                       <  2:1875064/93‑1 (MQ=255)

                                                   tCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCATCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCt                                      <  1:2937693/93‑1 (MQ=255)

                                                   tCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCt                                      <  2:4049415/93‑1 (MQ=255)

                                                   tCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCt                                      <  2:560455/93‑1 (MQ=255)

                                                   tCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCt                                      <  1:4797521/93‑1 (MQ=255)

                                                   tCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCt                                      >  2:2857934/1‑93 (MQ=255)

                                                     gggCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTg                                    >  1:4978174/1‑93 (MQ=255)

                                                     gggCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTg                                    >  2:166846/1‑93 (MQ=255)

                                                      ggCGACGTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGc                                   <  2:4545903/93‑1 (MQ=255)

                                                      ggCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGc                                   <  2:5628710/93‑1 (MQ=255)

                                                      ggCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCCAAACATTCTTGc                                   >  1:5893312/1‑93 (MQ=255)

                                                       gCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGcc                                  <  2:4837990/93‑1 (MQ=255)

                                                         gACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCAc                                >  2:3846224/1‑93 (MQ=255)

                                                          aCCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCAcc                               >  1:2636887/1‑93 (MQ=255)

                                                          aCCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCAcc                               <  1:4592983/93‑1 (MQ=255)

                                                          aCCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCAcc                               <  2:3730206/93‑1 (MQ=255)

                                                           ccTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCt                              <  2:5208964/93‑1 (MQ=255)

                                                           ccTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCt                              <  1:2107601/93‑1 (MQ=255)

                                                             tttCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGc                            >  1:525003/1‑93 (MQ=255)

                                                             tttCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGc                            >  2:3649153/1‑93 (MQ=255)

                                                                cACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTc                         <  1:4732892/93‑1 (MQ=255)

                                                                cACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTc                         <  2:2672751/93‑1 (MQ=255)

                                                                cACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTc                         <  1:5666038/93‑1 (MQ=255)

                                                                 aCCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCg                        >  2:5303439/1‑93 (MQ=255)

                                                                  cccGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGa                       >  1:5757833/1‑93 (MQ=255)

                                                                  cccGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGa                       <  1:4404476/93‑1 (MQ=255)

                                                                     gTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAg                    >  1:732593/1‑93 (MQ=255)

                                                                      tCCGCTCATGAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGc                   <  1:1769075/93‑1 (MQ=255)

                                                                        cGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTTGATAGCgg                 >  1:1723683/1‑93 (MQ=255)

                                                                        cGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCgg                 <  1:1394943/93‑1 (MQ=255)

                                                                        cGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCgg                 >  2:502320/1‑93 (MQ=255)

                                                                         gCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGa                >  2:3341548/1‑93 (MQ=255)

                                                                          cTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGaa               <  2:2521888/93‑1 (MQ=255)

                                                                           tccttAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGaat              <  1:5019266/90‑1 (MQ=255)

                                                                           tCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGaat              <  1:3651200/93‑1 (MQ=255)

                                                                           tCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGaat              >  2:5294798/1‑93 (MQ=255)

                                                                             aTTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGaataa            <  2:3750231/93‑1 (MQ=255)

                                                                               tAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATc          >  1:1567570/1‑93 (MQ=255)

                                                                               tAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATc          <  2:6330698/93‑1 (MQ=255)

                                                                               tAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATc          <  1:3409322/93‑1 (MQ=255)

                                                                                aaTTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCg         <  2:6054119/93‑1 (MQ=255)

                                                                                 aTTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCga        <  1:1225710/93‑1 (MQ=255)

                                                                                 aTTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCga        <  1:388845/93‑1 (MQ=255)

                                                                                   tGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCgaga      <  2:2150004/93‑1 (MQ=255)

                                                                                      aGGGCACTTTCCAGCAGCGGGCGCGGTTCAAATGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGaagt   >  1:1251464/1‑91 (MQ=255)

                                                                                      aGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAata   <  2:5309491/93‑1 (MQ=255)

                                                                                      aGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAata   >  1:5995136/1‑93 (MQ=255)

                                                                                      aGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAata   >  2:2869299/1‑93 (MQ=255)

                                                                                      aGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAata   >  1:1889126/1‑93 (MQ=255)

                                                                                       gggCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAatat  <  2:2289668/93‑1 (MQ=255)

CGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGTACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATAT  >  NC_000913/1053730‑1053909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATCGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGTACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATATCGTT  >  NC_000913/1053727‑1053913

GATCGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGC                                                                                               >  SRR4302534.324039/1‑94 (MQ=60)

   CGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACT                                                                                            >  SRR4302534.1277276/1‑94 (MQ=60)

   CGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACT                                                                                            <  SRR4302534.4361816/94‑1 (MQ=60)

    GCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTT                                                                                           <  SRR4302534.681673/94‑1 (MQ=60)

    GCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTT                                                                                           <  SRR4302534.4241970/94‑1 (MQ=60)

     CCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTT                                                                                          >  SRR4302534.3180380/1‑94 (MQ=60)

     CCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTT                                                                                          <  SRR4302534.5517932/94‑1 (MQ=60)

      CCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTC                                                                                         >  SRR4302534.1480676/1‑94 (MQ=60)

      CCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTC                                                                                         >  SRR4302534.5879303/1‑94 (MQ=60)

       CATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCC                                                                                        >  SRR4302534.1022441/1‑94 (MQ=60)

       CATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCC                                                                                        >  SRR4302534.3592923/1‑94 (MQ=60)

       CATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCC                                                                                        <  SRR4302534.4127984/94‑1 (MQ=60)

         TTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAG                                                                                      <  SRR4302534.440357/94‑1 (MQ=60)

          TAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCGTTAATTGCAGGGCACTTTCCAGC                                                                                     >  SRR4302534.1796831/1‑94 (MQ=60)

          TAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGC                                                                                     >  SRR4302534.5960717/1‑94 (MQ=60)

          TAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGC                                                                                     <  SRR4302534.5472208/94‑1 (MQ=60)

           AACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCA                                                                                    <  SRR4302534.4890165/94‑1 (MQ=60)

            ACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAG                                                                                   <  SRR4302534.6386970/94‑1 (MQ=60)

             CGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGC                                                                                  <  SRR4302534.6208442/94‑1 (MQ=60)

             CGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGC                                                                                  >  SRR4302534.6570775/1‑94 (MQ=60)

              GCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCG                                                                                 <  SRR4302534.6094284/94‑1 (MQ=60)

               CGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGG                                                                                <  SRR4302534.3218032/94‑1 (MQ=60)

               CGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGG                                                                                <  SRR4302534.1481972/94‑1 (MQ=60)

                GCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGG                                                                               >  SRR4302534.1158121/1‑94 (MQ=60)

                GCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGG                                                                               <  SRR4302534.4277640/94‑1 (MQ=60)

                 CACGGCATATCATCGGCAATTGCCGTTGCCGGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGC                                                                              <  SRR4302534.5125322/94‑1 (MQ=60)

                 CACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGC                                                                              >  SRR4302534.5442972/1‑94 (MQ=60)

                  ACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCG                                                                             <  SRR4302534.1832269/94‑1 (MQ=60)

                  ACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCG                                                                             >  SRR4302534.812843/1‑94 (MQ=60)

                   CGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGC                                                                            >  SRR4302534.4291364/1‑94 (MQ=60)

                    GGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCG                                                                           >  SRR4302534.4802930/1‑94 (MQ=60)

                     GCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGG                                                                          <  SRR4302534.567726/94‑1 (MQ=60)

                      CATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCTAGCAGCGGGCGCGGT                                                                         <  SRR4302534.4027262/94‑1 (MQ=60)

                      CATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGT                                                                         >  SRR4302534.5066079/1‑94 (MQ=60)

                       ATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTT                                                                        >  SRR4302534.6443831/1‑94 (MQ=60)

                       ATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTT                                                                        <  SRR4302534.1123744/94‑1 (MQ=60)

                       ATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTT                                                                        >  SRR4302534.2737697/1‑94 (MQ=60)

                        TATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTC                                                                       <  SRR4302534.2871282/94‑1 (MQ=60)

                          TCATCAGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCCA                                                                     >  SRR4302534.2549985/1‑94 (MQ=60)

                           CATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAA                                                                    >  SRR4302534.170342/1‑94 (MQ=60)

                           CATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAA                                                                    >  SRR4302534.2743394/1‑94 (MQ=60)

                           CATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAA                                                                    <  SRR4302534.3544110/94‑1 (MQ=60)

                            ATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACGTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAG                                                                   <  SRR4302534.364852/94‑1 (MQ=60)

                              CGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGG                                                                 <  SRR4302534.1723664/94‑1 (MQ=60)

                               GGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGC                                                                <  SRR4302534.2300747/94‑1 (MQ=60)

                               GGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGC                                                                >  SRR4302534.5722292/1‑94 (MQ=60)

                               GGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCAGGCGCGGTTCAAAGGGC                                                                >  SRR4302534.4743801/1‑94 (MQ=60)

                                 CAATTGCCGTTGCCAGGCGAATCGGGCGACATTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTC                                                              <  SRR4302534.5497321/94‑1 (MQ=60)

                                  AATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCACAGGGCTCA                                                             >  SRR4302534.5318351/1‑94 (MQ=60)

                                  AATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAAGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCA                                                             >  SRR4302534.1060910/1‑94 (MQ=60)

                                   ATTGCCGTTGCCAGGCGCATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCCAAGGGCTCAT                                                            >  SRR4302534.2305417/1‑94 (MQ=60)

                                   ATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCTGTTCAAAGGGCTCAT                                                            <  SRR4302534.4026320/94‑1 (MQ=60)

                                   AGTGCCGTTACCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCTGTTCAAAGGGCTCAT                                                            <  SRR4302534.4026319/94‑1 (MQ=60)

                                    TTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATC                                                           <  SRR4302534.5984570/94‑1 (MQ=60)

                                       CCGTTTCCAGGCGAATCGGGCGACCTTTCCCCCGTCGGCACATTAATTGCAGGGCACTTCCCAGCAGCGGGCGCGGTTCAAAGGCCTCATCGCT                                                        <  SRR4302534.2309024/94‑1 (MQ=60)

                                       CCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCT                                                        >  SRR4302534.4269742/1‑94 (MQ=60)

                                        CGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCCAAGGGCTCATCGCTC                                                       >  SRR4302534.1161066/1‑94 (MQ=60)

                                        CGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTG                                                       <  SRR4302534.2900412/94‑1 (MQ=60)

                                          TTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGAC                                                     <  SRR4302534.5188038/94‑1 (MQ=60)

                                          TTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGAC                                                     <  SRR4302534.616720/94‑1 (MQ=60)

                                             CCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGA                                                  <  SRR4302534.3561328/94‑1 (MQ=60)

                                             CCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGA                                                  <  SRR4302534.3500963/94‑1 (MQ=60)

                                             CCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGA                                                  >  SRR4302534.5746968/1‑94 (MQ=60)

                                              CAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGGGCGGGTCAAAGGGCTCATCcctagccgaa                                                 >  SRR4302534.6379882/1‑84 (MQ=60)

                                               AGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTTCAGGGCACTTTCCAGCAGCGGGCGCGGGTCAAAGGGCTCATCGCTGACCGAAA                                                >  SRR4302534.2020262/1‑94 (MQ=60)

                                               AGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCtctcgccgttcaatgtgctcatcgctgcccgaac                                                >  SRR4302534.4182109/1‑60 (MQ=60)

                                               AGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAA                                                >  SRR4302534.5019433/1‑94 (MQ=60)

                                                  CGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACAT                                             >  SRR4302534.2207342/1‑94 (MQ=60)

                                                  CGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACAT                                             >  SRR4302534.1346985/1‑94 (MQ=60)

                                                   GAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATT                                            >  SRR4302534.3214647/1‑94 (MQ=60)

                                                    AATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGGTCAAAGGGCTCATCGCTGACCGAAACATTC                                           >  SRR4302534.120823/1‑94 (MQ=60)

                                                     ATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGGAACATTCT                                          <  SRR4302534.6297182/94‑1 (MQ=60)

                                                     ATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCT                                          >  SRR4302534.3921117/1‑94 (MQ=60)

                                                     ATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCT                                          <  SRR4302534.4414256/94‑1 (MQ=60)

                                                     ATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCT                                          >  SRR4302534.2085904/1‑94 (MQ=60)

                                                      TCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCATCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTT                                         <  SRR4302534.3014794/94‑1 (MQ=60)

                                                      TCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTT                                         <  SRR4302534.4927786/94‑1 (MQ=60)

                                                       CGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTG                                        <  SRR4302534.1136387/94‑1 (MQ=60)

                                                       CGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTG                                        >  SRR4302534.5112920/1‑94 (MQ=60)

                                                        GGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCCAAACATTCTTGC                                       >  SRR4302534.6053327/1‑94 (MQ=60)

                                                         GGCGACCTTTCACCCGTCCGCTCATTAATTGCTGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCC                                      >  SRR4302534.5288490/1‑94 (MQ=60)

                                                         GGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCC                                      <  SRR4302534.2168904/94‑1 (MQ=60)

                                                           CGACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCAC                                    >  SRR4302534.1543237/1‑94 (MQ=60)

                                                            GACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACC                                   >  SRR4302534.3419289/1‑94 (MQ=60)

                                                            GACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACC                                   >  SRR4302534.2706648/1‑94 (MQ=60)

                                                             ACCTTTCACTCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCG                                  >  SRR4302534.6036995/1‑94 (MQ=60)

                                                             ACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCT                                  <  SRR4302534.4717637/94‑1 (MQ=60)

                                                             ACCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCT                                  >  SRR4302534.78335/1‑94 (MQ=60)

                                                              CCTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTG                                 <  SRR4302534.2162980/94‑1 (MQ=60)

                                                               CTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGC                                >  SRR4302534.1103692/1‑94 (MQ=60)

                                                               CTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGC                                >  SRR4302534.538051/1‑94 (MQ=60)

                                                               CTTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGC                                >  SRR4302534.211229/1‑94 (MQ=60)

                                                                CTTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCT                               <  SRR4302534.5475383/94‑1 (MQ=60)

                                                                 TTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTT                              <  SRR4302534.4822234/94‑1 (MQ=60)

                                                                 TTCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTT                              <  SRR4302534.184767/94‑1 (MQ=60)

                                                                  TCACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTC                             <  SRR4302534.1954202/94‑1 (MQ=60)

                                                                   CACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCG                            <  SRR4302534.4861408/94‑1 (MQ=60)

                                                                   CACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCG                            <  SRR4302534.5819429/94‑1 (MQ=60)

                                                                    ACCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGA                           >  SRR4302534.5914017/1‑94 (MQ=60)

                                                                     CCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGAT                          >  SRR4302534.2560526/1‑94 (MQ=60)

                                                                     CCCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGAT                          <  SRR4302534.4523328/94‑1 (MQ=60)

                                                                      CCGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATA                         >  SRR4302534.4725677/1‑94 (MQ=60)

                                                                      CCGTCCGCTCATTAATGGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATA                         <  SRR4302534.1337522/94‑1 (MQ=60)

                                                                       CGTCCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAG                        >  SRR4302534.750703/1‑94 (MQ=60)

                                                                         TCCGCTCATTAATTGCAGGGCTCTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCG                      <  SRR4302534.381509/94‑1 (MQ=60)

                                                                         TCCGCTCATGAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCG                      <  SRR4302534.1815017/94‑1 (MQ=60)

                                                                          CCGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTTGATAGCGG                     >  SRR4302534.1768452/1‑94 (MQ=60)

                                                                           CGCTCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGA                    <  SRR4302534.1431654/94‑1 (MQ=60)

                                                                              TCCTTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATA                 <  SRR4302534.5154883/94‑1 (MQ=60)

                                                                              TCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATA                 >  SRR4302534.5805790/1‑94 (MQ=60)

                                                                              TCATTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATA                 <  SRR4302534.3749328/94‑1 (MQ=60)

                                                                                 TTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATC              <  SRR4302534.3727061/94‑1 (MQ=60)

                                                                                 TTAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATC              >  SRR4302534.1608629/1‑94 (MQ=60)

                                                                                  TAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCG             <  SRR4302534.2344196/94‑1 (MQ=60)

                                                                                  TAATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCG             <  SRR4302534.3500892/94‑1 (MQ=60)

                                                                                    ATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAG           <  SRR4302534.398785/94‑1 (MQ=60)

                                                                                    ATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAG           <  SRR4302534.2233016/94‑1 (MQ=60)

                                                                                    ATTGCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAG           <  SRR4302534.1257984/94‑1 (MQ=60)

                                                                                       GCAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAAT        <  SRR4302534.4705605/94‑1 (MQ=60)

                                                                                        CAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAATGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAAgt       >  SRR4302534.1284446/1‑92 (MQ=60)

                                                                                        CAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATATTCGAGAATA       <  SRR4302534.6478505/94‑1 (MQ=60)

                                                                                        CAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATA       >  SRR4302534.1938389/1‑94 (MQ=60)

                                                                                        CAGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATA       >  SRR4302534.6158000/1‑94 (MQ=60)

                                                                                         AGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATAT      <  SRR4302534.5917552/94‑1 (MQ=60)

                                                                                         AGGGCACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATAT      >  SRR4302534.5333480/1‑94 (MQ=60)

                                                                                             CACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATATCGTT  >  SRR4302534.2756830/1‑94 (MQ=60)

                                                                                             CACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATATCGTT  <  SRR4302534.4310124/94‑1 (MQ=60)

                                                                                             CACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATATCGTT  <  SRR4302534.2672737/94‑1 (MQ=60)

                                                                                             CACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATATCGTT  >  SRR4302534.5640375/1‑94 (MQ=60)

GATCGCCCATTAACGCGCACGGCATATCATCGGCAATTGCCGTTGCCAGGCGAATCGGGCGACCTTTCACCCGTCCGCTCATTAATTGCAGGGTACTTTCCAGCAGCGGGCGCGGTTCAAAGGGCTCATCGCTGACCGAAACATTCTTGCCACCTGCTTCGATAGCGGAATAATCGAGAATATCGTT  >  NC_000913/1053727‑1053913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`