Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,098,156 |
A→G |
T19A (ACA→GCA) |
ycdX → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,098,156 | 0 | A | G | 99.6%
| 794.4
/ ‑4.4
| 227 | T19A (ACA→GCA) | ycdX | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (129/97); total (129/98) |
| Fisher's exact test for biased strand distribution p-value = 4.32e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.91e-01 |
Only 100 of 233 total aligned reads displayed.
GCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCACATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCG > NC_000913/1098066‑1098245
|
tATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCAtt > 2:268489/1‑93 (MQ=255)
tCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTaa < 2:6200542/93‑1 (MQ=255)
tCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTaa < 2:5266114/93‑1 (MQ=255)
ttGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTg > 2:4785265/1‑93 (MQ=255)
ttGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTg > 2:1364637/1‑93 (MQ=255)
ggCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGAt > 1:4031566/1‑93 (MQ=255)
gCGGGAATTGAATACAGGAGAGAGTTAGGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGAtt < 1:2468319/93‑1 (MQ=255)
gggAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTAc > 1:1416689/1‑93 (MQ=255)
ggAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACa > 2:1135027/1‑93 (MQ=255)
gAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACAt < 1:5423687/93‑1 (MQ=255)
tGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGcc < 2:3265036/93‑1 (MQ=255)
gAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGccc > 2:2948758/1‑93 (MQ=255)
aaTACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCa < 1:5103042/93‑1 (MQ=255)
aaTACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCa < 2:2860303/93‑1 (MQ=255)
aTACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGGCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAg > 1:6230612/1‑93 (MQ=255)
aTACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAg > 1:4099688/1‑93 (MQ=255)
aTACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAg > 2:3564574/1‑93 (MQ=255)
tACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAgg < 1:1694975/93‑1 (MQ=255)
aCAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGc > 1:208975/1‑93 (MQ=255)
aCAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGc < 2:1698812/93‑1 (MQ=255)
aCAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGc < 2:435740/93‑1 (MQ=255)
aCAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGc > 2:2472681/1‑93 (MQ=255)
aGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCca > 1:2127563/1‑93 (MQ=255)
ggAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaa > 2:3216561/1‑93 (MQ=255)
ggAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaa > 2:2118583/1‑93 (MQ=255)
ggAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaa < 2:2209336/93‑1 (MQ=255)
agagagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaac > 1:718580/1‑93 (MQ=255)
agagagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaac > 2:5862049/1‑93 (MQ=255)
gagagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaaca > 2:3796741/1‑93 (MQ=255)
gagagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaaca > 1:3975271/1‑93 (MQ=255)
gagagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaaca < 2:5521119/93‑1 (MQ=255)
gagagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaaca > 1:2441274/1‑93 (MQ=255)
agagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaacaa < 2:5116320/93‑1 (MQ=255)
agagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaacaa > 1:2218732/1‑93 (MQ=255)
gagTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCcaaacaaa > 2:398297/1‑93 (MQ=255)
agTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACaaaa < 2:3680395/93‑1 (MQ=255)
agTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACaaaa < 2:1280413/93‑1 (MQ=255)
aggTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACCCATGCATATAGCGCATTAAGTGATGACATTGCCCAGGCCAAACAAAAGGGc < 2:4961576/91‑1 (MQ=255)
aTGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGc > 2:5183325/1‑93 (MQ=255)
tGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCa < 1:3513909/93‑1 (MQ=255)
gTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCAt > 1:4776214/1‑93 (MQ=255)
gTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCAt < 1:1800114/93‑1 (MQ=255)
tATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCAtt > 1:2184257/1‑93 (MQ=255)
aTCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTa > 1:553527/1‑93 (MQ=255)
aTCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTa > 2:690176/1‑93 (MQ=255)
aTCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTa > 1:2083564/1‑93 (MQ=255)
cccGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTaaa > 1:3747753/1‑93 (MQ=255)
ccGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAAc > 2:4902442/1‑93 (MQ=255)
ccGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAAc < 2:266611/93‑1 (MQ=255)
cGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACt > 1:4678320/1‑93 (MQ=255)
gTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACtt < 1:77694/93‑1 (MQ=255)
tCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACttt < 1:1000646/93‑1 (MQ=255)
cGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACtttt > 2:5871734/1‑93 (MQ=255)
cGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACtttt < 2:3374439/93‑1 (MQ=255)
gACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACttttt > 2:655846/1‑93 (MQ=255)
gACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACttttt > 1:2836491/1‑93 (MQ=255)
gACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCACGCCAAACAAAAGGGCATTAAACttttt > 2:5880038/1‑93 (MQ=255)
aCCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTg < 1:4725806/93‑1 (MQ=255)
aCCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTg > 1:4496806/1‑93 (MQ=255)
aCCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTg < 1:3832002/93‑1 (MQ=255)
ccTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGc < 2:776056/93‑1 (MQ=255)
ccTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGc < 1:6020320/93‑1 (MQ=255)
tCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGAt > 1:2915121/1‑93 (MQ=255)
tCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGAt > 1:5702164/1‑93 (MQ=255)
cATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATc < 1:5044996/93‑1 (MQ=255)
tatGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCAc > 2:5632027/1‑93 (MQ=255)
tatGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCAc > 2:3885977/1‑93 (MQ=255)
atGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCAcc < 2:4774567/93‑1 (MQ=255)
tGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCg > 1:1548294/1‑93 (MQ=255)
cATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGAt < 2:2897481/93‑1 (MQ=255)
aTACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATc < 1:5453338/93‑1 (MQ=255)
aTACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATc < 1:494038/93‑1 (MQ=255)
tACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCa > 1:6138302/1‑93 (MQ=255)
tACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCa > 1:3790951/1‑93 (MQ=255)
aCCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCAt < 1:911497/93‑1 (MQ=255)
gTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGc > 2:3155086/1‑93 (MQ=255)
gTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGc < 1:536063/93‑1 (MQ=255)
gCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCg > 1:641537/1‑93 (MQ=255)
ccAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCgg > 1:3371352/1‑93 (MQ=255)
aGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGat > 1:5338605/1‑93 (MQ=255)
aGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGat > 1:3159511/1‑93 (MQ=255)
gCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGata > 2:257207/1‑93 (MQ=255)
gCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGata < 2:4558458/93‑1 (MQ=255)
caTGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGaa < 2:6092740/93‑1 (MQ=255)
aTGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAg < 2:639299/93‑1 (MQ=255)
tGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGa < 1:4305731/93‑1 (MQ=255)
cATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATg < 2:5312534/93‑1 (MQ=255)
cATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATg < 2:2606102/93‑1 (MQ=255)
atatAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgc > 2:4671365/1‑93 (MQ=255)
atatAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgc < 2:3478790/93‑1 (MQ=255)
atatAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgc > 1:2679960/1‑93 (MQ=255)
atatAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgc > 1:1366405/1‑93 (MQ=255)
tataGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgcg < 2:1112885/93‑1 (MQ=255)
tataGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgcg < 2:2381165/93‑1 (MQ=255)
ataGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgcgc < 2:1974112/93‑1 (MQ=255)
ataGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgcgc > 1:4378054/1‑93 (MQ=255)
ataGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgcgc < 1:3023034/93‑1 (MQ=255)
ataGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATgcgc > 1:2341278/1‑93 (MQ=255)
aGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGcgccg > 2:5450093/1‑93 (MQ=255)
aGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGcgccg > 1:1140745/1‑93 (MQ=255)
|
GCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCACATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCG > NC_000913/1098066‑1098245
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCACATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCGCAT > NC_000913/1098063‑1098248
|
CCTGCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTAACCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCG < SRR4302534.5023182/94‑1 (MQ=60)
CTGCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGC > SRR4302534.6099001/1‑94 (MQ=60)
TGCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCA > SRR4302534.6633201/1‑94 (MQ=60)
TCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCAT < SRR4302534.4399356/94‑1 (MQ=60)
GCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCAT < SRR4302534.2197126/94‑1 (MQ=60)
TATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTA > SRR4302534.3391024/1‑94 (MQ=60)
ATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAA > SRR4302534.24112/1‑94 (MQ=60)
TCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAG < SRR4302534.3940838/94‑1 (MQ=60)
TGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGAT > SRR4302534.4139645/1‑94 (MQ=60)
GCGGGAATTGAATACAGGAGAGAGTTAGGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTA < SRR4302534.2533930/94‑1 (MQ=60)
CGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTAC > SRR4302534.1453959/1‑94 (MQ=60)
GGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCAAGCACACATGAATATAGCGCATCAAGTGATTACA > SRR4302534.3900901/1‑94 (MQ=60)
GAATTGAATACAGGAGAGAGTTATGTATCCCGTCGTCCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATT < SRR4302534.4389162/94‑1 (MQ=60)
GAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATT < SRR4302534.5003377/94‑1 (MQ=60)
GAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATT < SRR4302534.2259981/94‑1 (MQ=60)
GAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATT < SRR4302534.5569641/94‑1 (MQ=60)
TGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCC < SRR4302534.1293856/94‑1 (MQ=60)
GAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCA > SRR4302534.2227767/1‑94 (MQ=60)
AATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGGCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAG > SRR4302534.6399748/1‑94 (MQ=60)
AATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAG < SRR4302534.4088149/94‑1 (MQ=60)
AATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAG < SRR4302534.5240778/94‑1 (MQ=60)
AATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAG > SRR4302534.4209913/1‑94 (MQ=60)
TACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGC < SRR4302534.1739032/94‑1 (MQ=60)
TACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGC > SRR4302534.214470/1‑94 (MQ=60)
CAGGAGAGAGTTATGTATCCCGTCTACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCA < SRR4302534.4969279/94‑1 (MQ=60)
CAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCA > SRR4302534.2183602/1‑94 (MQ=60)
CAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCA > SRR4302534.4781300/1‑94 (MQ=60)
AGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAA > SRR4302534.481966/1‑94 (MQ=60)
AGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAA < SRR4302534.1422202/94‑1 (MQ=60)
GAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAAC > SRR4302534.736305/1‑94 (MQ=60)
AGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACA > SRR4302534.4081666/1‑94 (MQ=60)
AGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACA > SRR4302534.5516113/1‑94 (MQ=60)
AGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACA > SRR4302534.2506161/1‑94 (MQ=60)
GAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAA > SRR4302534.2277499/1‑94 (MQ=60)
AGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAA > SRR4302534.16850/1‑94 (MQ=60)
GAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAA < SRR4302534.570759/94‑1 (MQ=60)
GTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGG > SRR4302534.3230707/1‑94 (MQ=60)
TGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCAT > SRR4302534.4905916/1‑94 (MQ=60)
TGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCAT < SRR4302534.3608433/94‑1 (MQ=60)
GTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATT < SRR4302534.1846856/94‑1 (MQ=60)
GTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATT > SRR4302534.2241999/1‑94 (MQ=60)
GTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATT < SRR4302534.5587687/94‑1 (MQ=60)
TATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTA > SRR4302534.2138149/1‑94 (MQ=60)
TATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTA > SRR4302534.567175/1‑94 (MQ=60)
ATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAA > SRR4302534.5486794/1‑94 (MQ=60)
TCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAA > SRR4302534.3848424/1‑94 (MQ=60)
TCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAA > SRR4302534.5223923/1‑94 (MQ=60)
CCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAAC > SRR4302534.2409350/1‑94 (MQ=60)
CCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACT > SRR4302534.4805332/1‑94 (MQ=60)
CCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACT > SRR4302534.3891948/1‑94 (MQ=60)
CGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTT > SRR4302534.5600704/1‑94 (MQ=60)
CGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTT > SRR4302534.4201771/1‑94 (MQ=60)
GTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTT < SRR4302534.79798/94‑1 (MQ=60)
GTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTT > SRR4302534.6465797/1‑94 (MQ=60)
TCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTT < SRR4302534.1026289/94‑1 (MQ=60)
TCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTT < SRR4302534.2142957/94‑1 (MQ=60)
TCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTT < SRR4302534.6008032/94‑1 (MQ=60)
CGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTT > SRR4302534.2911011/1‑94 (MQ=60)
CGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTT > SRR4302534.6346571/1‑94 (MQ=60)
GACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTG > SRR4302534.4618504/1‑94 (MQ=60)
ACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGC < SRR4302534.3934915/94‑1 (MQ=60)
ACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGC > SRR4302534.90381/1‑94 (MQ=60)
ACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGC < SRR4302534.4854151/94‑1 (MQ=60)
ACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGC > SRR4302534.2910253/1‑94 (MQ=60)
CCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCG < SRR4302534.6183924/94‑1 (MQ=60)
CCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCG < SRR4302534.215477/94‑1 (MQ=60)
CTTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGA < SRR4302534.4699102/94‑1 (MQ=60)
TTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGAT > SRR4302534.5856627/1‑94 (MQ=60)
TTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGAT > SRR4302534.2991629/1‑94 (MQ=60)
TTCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGAT > SRR4302534.3070277/1‑94 (MQ=60)
TCATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATC < SRR4302534.2535056/94‑1 (MQ=60)
CATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCA < SRR4302534.5181227/94‑1 (MQ=60)
CATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCA > SRR4302534.751515/1‑94 (MQ=60)
ATATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCAC > SRR4302534.6125794/1‑94 (MQ=60)
ATGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCG > SRR4302534.1588870/1‑94 (MQ=60)
TGCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGA < SRR4302534.4482867/94‑1 (MQ=60)
GCATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGAT < SRR4302534.938888/94‑1 (MQ=60)
ATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCA > SRR4302534.3892724/1‑94 (MQ=60)
ATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCA < SRR4302534.5600286/94‑1 (MQ=60)
ATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCA < SRR4302534.3726258/94‑1 (MQ=60)
ATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCA > SRR4302534.6305260/1‑94 (MQ=60)
ATACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCA < SRR4302534.506363/94‑1 (MQ=60)
TACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCAT < SRR4302534.4015213/94‑1 (MQ=60)
ACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATG < SRR4302534.6268500/94‑1 (MQ=60)
ACCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATG < SRR4302534.934674/94‑1 (MQ=60)
CCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGG < SRR4302534.4557743/94‑1 (MQ=60)
CCGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGG > SRR4302534.350950/1‑94 (MQ=60)
CGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGC < SRR4302534.1542178/94‑1 (MQ=60)
CGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGC > SRR4302534.917154/1‑94 (MQ=60)
CGTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGC > SRR4302534.3230362/1‑94 (MQ=60)
GTTGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCC < SRR4302534.549358/94‑1 (MQ=60)
TGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCG > SRR4302534.657102/1‑94 (MQ=60)
TGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCG < SRR4302534.5280758/94‑1 (MQ=60)
TGCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCG > SRR4302534.2508250/1‑94 (MQ=60)
GCCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGG > SRR4302534.3461680/1‑94 (MQ=60)
CCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGA > SRR4302534.2383635/1‑94 (MQ=60)
CCAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGA > SRR4302534.4899684/1‑94 (MQ=60)
CAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGAT > SRR4302534.3242750/1‑94 (MQ=60)
CAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGAT > SRR4302534.5482533/1‑94 (MQ=60)
CAGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGAT > SRR4302534.3837085/1‑94 (MQ=60)
CAACACACATAAATATAGCGCCTTAAGTGATTACATTGTCCAGGACAAACAAAAGGGCATTAAACTTTTTGtgatgaccgagcatgcctcgaaa > SRR4302534.2232460/1‑71 (MQ=41)
AGCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATA > SRR4302534.2874231/1‑94 (MQ=60)
GCACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATAT < SRR4302534.205915/94‑1 (MQ=60)
CACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATG > SRR4302534.6537962/1‑94 (MQ=60)
ACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGG > SRR4302534.1166858/1‑94 (MQ=60)
ACACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGG > SRR4302534.2923089/1‑94 (MQ=60)
CACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGtttggcctgggcaatgtaatcacttaat < SRR4302534.6038774/94‑29 (MQ=60)
ACATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAA > SRR4302534.1796407/1‑94 (MQ=60)
CATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAG < SRR4302534.2097363/94‑1 (MQ=60)
CATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAG < SRR4302534.1553674/94‑1 (MQ=60)
ATGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGA < SRR4302534.5580447/94‑1 (MQ=60)
TGCATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGAT < SRR4302534.4422444/94‑1 (MQ=60)
CATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGC > SRR4302534.2750802/1‑94 (MQ=60)
CATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGC > SRR4302534.1402390/1‑94 (MQ=60)
ATATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCG > SRR4302534.5083416/1‑94 (MQ=60)
TATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGC > SRR4302534.4496066/1‑94 (MQ=60)
TATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGC > SRR4302534.2403414/1‑94 (MQ=60)
ATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCC < SRR4302534.5300527/94‑1 (MQ=60)
ATAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCC < SRR4302534.3102238/94‑1 (MQ=60)
TAGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCG > SRR4302534.1170605/1‑94 (MQ=60)
AGCGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCGC > SRR4302534.4056861/1‑94 (MQ=60)
CGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCGCAT > SRR4302534.5193275/1‑94 (MQ=60)
CGCATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCGCAT > SRR4302534.4236147/1‑94 (MQ=60)
|
CCTGCTATCCTTGGCGGGAATTGAATACAGGAGAGAGTTATGTATCCCGTCGACCTTCATATGCATACCGTTGCCAGCACACATGCATATAGCACATTAAGTGATTACATTGCCCAGGCCAAACAAAAGGGCATTAAACTTTTTGCGATCACCGATCATGGCCCGGATATGGAAGATGCGCCGCAT > NC_000913/1098063‑1098248
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
