Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,383,611	A→G	Q26R (CAG→CGG)	ycjF →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,383,611	0	A	G	100.0%	866.5 / NA	248	Q26R (CAG→CGG)	ycjF	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (132/116); total (132/116)

Only 100 of 270 total aligned reads displayed.

GGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCAGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAA  >  NC_000913/1383521‑1383700

ggAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCgcggc                                                                                         >  2:4219322/1‑93 (MQ=255)

ggAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCgcggc                                                                                         >  2:2716060/1‑93 (MQ=255)

ggAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCgcggc                                                                                         >  2:3302976/1‑93 (MQ=255)

 gagaTAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCgcggca                                                                                        <  1:5211789/93‑1 (MQ=255)

 gagaTAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCgcggca                                                                                        <  1:2115935/93‑1 (MQ=255)

  agaTAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGcggcag                                                                                       >  2:1847932/1‑93 (MQ=255)

     tAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGAcc                                                                                    <  2:57432/93‑1 (MQ=255)

       aaTTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCtt                                                                                  <  1:664620/93‑1 (MQ=255)

        aTTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCttt                                                                                 <  2:2354327/93‑1 (MQ=255)

          tGCGAGGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGa                                                                               <  2:3373624/93‑1 (MQ=255)

           gCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGAc                                                                              <  1:4401219/93‑1 (MQ=255)

             gATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGa                                                                            >  1:4344067/1‑93 (MQ=255)

             gATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGa                                                                            >  1:59692/1‑93 (MQ=255)

             gATGACCGAACAGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGa                                                                            <  1:2326873/93‑1 (MQ=255)

               tGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGaaa                                                                          >  2:409469/1‑93 (MQ=255)

                gACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGaaaa                                                                         <  1:1215543/93‑1 (MQ=255)

                gACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGaaaa                                                                         >  2:5571735/1‑93 (MQ=255)

                gACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGaaaa                                                                         >  2:2622731/1‑93 (MQ=255)

                gACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGaaaa                                                                         <  1:1645954/93‑1 (MQ=255)

                 aCCGAACCGTTAAAACCACGTATTGATTTCGACGGTGCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAAt                                                                        >  2:6332220/1‑93 (MQ=255)

                 aCCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAAt                                                                        >  1:6070678/1‑93 (MQ=255)

                   cGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCa                                                                      >  2:4454886/1‑93 (MQ=255)

                    gAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAg                                                                     <  2:2886808/93‑1 (MQ=255)

                    gAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAg                                                                     <  2:6267516/93‑1 (MQ=255)

                    gAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAg                                                                     <  1:6184387/93‑1 (MQ=255)

                    gAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAg                                                                     <  1:4479746/93‑1 (MQ=255)

                     aaCCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAgg                                                                    >  1:4594065/1‑93 (MQ=255)

                      aCCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAggg                                                                   >  1:3235249/1‑92 (MQ=255)

                      aCCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGgc                                                                   <  2:899101/93‑1 (MQ=255)

                      aCCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGgc                                                                   >  1:4253566/1‑93 (MQ=255)

                      aCCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGgc                                                                   <  1:4028933/93‑1 (MQ=255)

                      aCCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGgc                                                                   >  2:6311216/1‑93 (MQ=255)

                       ccGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGgcg                                                                  >  1:5428225/1‑93 (MQ=255)

                         gTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCa                                                                >  1:2563876/1‑93 (MQ=255)

                            aaaaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCaaaa                                                             >  2:1228345/1‑93 (MQ=255)

                            aaaaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCaaaa                                                             <  2:3616415/93‑1 (MQ=255)

                            aaaaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCaaaa                                                             <  1:3487945/93‑1 (MQ=255)

                            aaaaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCaaaa                                                             <  2:4352237/93‑1 (MQ=255)

                             aaaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAt                                                            >  1:306636/1‑93 (MQ=255)

                             aaaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAt                                                            <  2:5995373/93‑1 (MQ=255)

                              aaCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAtt                                                           <  1:5192413/93‑1 (MQ=255)

                               aCCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAttt                                                          <  1:309726/93‑1 (MQ=255)

                                ccACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAtttt                                                         <  2:2306773/93‑1 (MQ=255)

                                  aCGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGc                                                       <  1:1521012/93‑1 (MQ=255)

                                    gTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGccc                                                     <  2:2688653/93‑1 (MQ=255)

                                     tATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGcccc                                                    <  2:6208484/93‑1 (MQ=255)

                                     tATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGcccc                                                    <  1:2680934/93‑1 (MQ=255)

                                     tATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGcccc                                                    >  2:2229478/1‑93 (MQ=255)

                                     tATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGcccc                                                    <  2:1762069/93‑1 (MQ=255)

                                      aTTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCTGGCGCAAAATTTTGCCCCg                                                   >  2:1419549/1‑93 (MQ=255)

                                       ttGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCgg                                                  >  1:865994/1‑93 (MQ=255)

                                        tGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGc                                                 >  2:3032939/1‑93 (MQ=255)

                                        tGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGc                                                 >  2:2067173/1‑93 (MQ=255)

                                         gATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGcc                                                >  1:2989780/1‑93 (MQ=255)

                                         gATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGcc                                                <  1:3571977/93‑1 (MQ=255)

                                          aTTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCa                                               >  2:2489669/1‑93 (MQ=255)

                                           tttCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCAc                                              >  2:5514000/1‑93 (MQ=255)

                                              cGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCt                                           <  2:2051697/93‑1 (MQ=255)

                                              cGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCt                                           <  1:282182/93‑1 (MQ=255)

                                              cGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCt                                           <  1:4129816/93‑1 (MQ=255)

                                               gtcGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTc                                          <  2:2948966/91‑1 (MQ=255)

                                               gACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTc                                          >  1:2853241/1‑93 (MQ=255)

                                                aCGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTcg                                         <  1:5552850/93‑1 (MQ=255)

                                                   gTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTcgacg                                      >  1:5591742/1‑93 (MQ=255)

                                                   gTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTcgacg                                      >  1:4826504/1‑93 (MQ=255)

                                                      ctctGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACTAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAg                                   <  2:3449586/93‑1 (MQ=255)

                                                        ctGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAgcg                                 >  1:6282777/1‑93 (MQ=255)

                                                        ctGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAgcg                                 >  2:69009/1‑93 (MQ=255)

                                                         tGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAgcgc                                <  2:4657628/93‑1 (MQ=255)

                                                           gAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAg                              >  1:3834563/1‑93 (MQ=255)

                                                            aGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAgg                             <  1:6311216/93‑1 (MQ=255)

                                                             ggTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGga                            <  1:4543289/93‑1 (MQ=255)

                                                              gTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGgaa                           <  2:5318182/93‑1 (MQ=255)

                                                              gTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGgaa                           >  2:4002742/1‑93 (MQ=255)

                                                                cGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGgaaga                         <  2:3112508/93‑1 (MQ=255)

                                                                  aTCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGaagaag                       <  2:3707120/93‑1 (MQ=255)

                                                                  aTCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGaagaag                       >  1:4565705/1‑93 (MQ=255)

                                                                   tCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAagaaga                      <  1:5119322/93‑1 (MQ=255)

                                                                     aGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAgg                    <  1:6027264/93‑1 (MQ=255)

                                                                      gAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAggg                   >  2:3877426/1‑93 (MQ=255)

                                                                      gAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAggg                   >  2:4956493/1‑93 (MQ=255)

                                                                       aaTCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAgggg                  <  1:736893/93‑1 (MQ=255)

                                                                        aTCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGc                 >  1:5304196/1‑93 (MQ=255)

                                                                        aTCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGc                 <  2:6282777/93‑1 (MQ=255)

                                                                          ccTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCaa               <  1:1788350/93‑1 (MQ=255)

                                                                           cTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAg              >  2:1492488/1‑93 (MQ=255)

                                                                             aaaTTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTc            >  1:4893810/1‑93 (MQ=255)

                                                                              aaTTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCg           <  1:4712880/93‑1 (MQ=255)

                                                                              aaTTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCg           >  1:6450356/1‑93 (MQ=255)

                                                                              aaTTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCg           >  2:1739759/1‑93 (MQ=255)

                                                                                  cAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGc       <  2:5824036/93‑1 (MQ=255)

                                                                                  cAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGc       <  2:2213342/93‑1 (MQ=255)

                                                                                   aGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCg      <  2:5210140/93‑1 (MQ=255)

                                                                                   aGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCg      >  2:6443605/1‑93 (MQ=255)

                                                                                    gggCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGCAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCgg     >  2:1637291/1‑93 (MQ=255)

                                                                                     ggCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGt    <  1:2894043/93‑1 (MQ=255)

                                                                                     ggCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGt    >  1:1299520/1‑93 (MQ=255)

                                                                                       cgcgGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTaa  <  2:563889/93‑1 (MQ=255)

                                                                                       cgcgGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTaa  <  1:2352524/93‑1 (MQ=255)

                                                                                       cgcgGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTaa  <  2:771317/93‑1 (MQ=255)

GGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCAGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAA  >  NC_000913/1383521‑1383700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCAGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAATGGA  >  NC_000913/1383518‑1383704

ATAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCG                                                                                               <  SRR4302534.964636/94‑1 (MQ=60)

ATAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCG                                                                                               <  SRR4302534.873450/94‑1 (MQ=60)

ATAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCG                                                                                               >  SRR4302534.3985358/1‑94 (MQ=60)

ATAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCG                                                                                               <  SRR4302534.5049623/94‑1 (MQ=60)

 TAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGG                                                                                              >  SRR4302534.2189517/1‑94 (MQ=60)

 TAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGG                                                                                              <  SRR4302534.6099625/94‑1 (MQ=60)

  AGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGC                                                                                             >  SRR4302534.6567211/1‑94 (MQ=60)

   GGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCA                                                                                            >  SRR4302534.2781819/1‑94 (MQ=60)

    GAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAG                                                                                           <  SRR4302534.5352443/94‑1 (MQ=60)

    GAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAG                                                                                           >  SRR4302534.5300789/1‑94 (MQ=60)

    GAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAG                                                                                           <  SRR4302534.2171607/94‑1 (MQ=60)

        TAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGAAGACCT                                                                                       <  SRR4302534.6365464/94‑1 (MQ=60)

         AAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTT                                                                                      >  SRR4302534.4947859/1‑94 (MQ=60)

         AAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTT                                                                                      <  SRR4302534.6625462/94‑1 (MQ=60)

          AATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTT                                                                                     >  SRR4302534.6207393/1‑94 (MQ=60)

          AATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTT                                                                                     >  SRR4302534.751798/1‑94 (MQ=60)

          AATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTT                                                                                     <  SRR4302534.680802/94‑1 (MQ=60)

           ATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTG                                                                                    <  SRR4302534.2944809/94‑1 (MQ=60)

           ATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTG                                                                                    <  SRR4302534.4082774/94‑1 (MQ=60)

            TTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGA                                                                                   <  SRR4302534.3896134/94‑1 (MQ=60)

              GCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACG                                                                                 >  SRR4302534.4641155/1‑94 (MQ=60)

              GCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACG                                                                                 <  SRR4302534.4519966/94‑1 (MQ=60)

               CGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGA                                                                                >  SRR4302534.4461405/1‑94 (MQ=60)

               CGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGA                                                                                >  SRR4302534.61310/1‑94 (MQ=60)

                GATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAA                                                                               <  SRR4302534.1589888/94‑1 (MQ=60)

                GATGACCGAACAGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAA                                                                               <  SRR4302534.2388619/94‑1 (MQ=60)

                   GACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAAT                                                                            >  SRR4302534.5133001/1‑94 (MQ=60)

                   GACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAAT                                                                            <  SRR4302534.1247529/94‑1 (MQ=60)

                   GACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAAT                                                                            <  SRR4302534.1688855/94‑1 (MQ=60)

                   GACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAAT                                                                            >  SRR4302534.6235728/1‑94 (MQ=60)

                    ACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATC                                                                           <  SRR4302534.4318053/94‑1 (MQ=60)

                       GAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGG                                                                        <  SRR4302534.4600942/94‑1 (MQ=60)

                       GAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGG                                                                        <  SRR4302534.477713/94‑1 (MQ=60)

                       GAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGG                                                                        >  SRR4302534.4718744/1‑94 (MQ=60)

                       GAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGG                                                                        <  SRR4302534.6352713/94‑1 (MQ=60)

                        AACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGG                                                                       >  SRR4302534.3321290/1‑94 (MQ=60)

                        AACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGC                                                                       >  SRR4302534.4368344/1‑94 (MQ=60)

                        AACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGC                                                                       >  SRR4302534.2931470/1‑94 (MQ=60)

                        AACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTCACGAAAATCAGGC                                                                       <  SRR4302534.1305213/94‑1 (MQ=60)

                         ACGGTTAAAACCACGTAGTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCG                                                                      <  SRR4302534.5705006/94‑1 (MQ=60)

                         ACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCG                                                                      <  SRR4302534.4136948/94‑1 (MQ=60)

                         ACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCG                                                                      >  SRR4302534.5307237/1‑94 (MQ=60)

                         ACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCG                                                                      >  SRR4302534.5574343/1‑94 (MQ=60)

                          CCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGC                                                                     >  SRR4302534.1951378/1‑94 (MQ=60)

                           CGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCA                                                                    >  SRR4302534.2631834/1‑94 (MQ=60)

                           CGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCA                                                                    >  SRR4302534.3032568/1‑94 (MQ=60)

                            GTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAA                                                                   >  SRR4302534.3189696/1‑94 (MQ=60)

                            GTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAA                                                                   <  SRR4302534.244061/94‑1 (MQ=60)

                               AAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAT                                                                >  SRR4302534.6064780/1‑94 (MQ=60)

                               AAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAT                                                                >  SRR4302534.314540/1‑94 (MQ=60)

                               AAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAAT                                                                <  SRR4302534.3581686/94‑1 (MQ=60)

                                 AACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTT                                                              <  SRR4302534.5332404/94‑1 (MQ=60)

                                 AACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTT                                                              <  SRR4302534.812590/94‑1 (MQ=60)

                                  ACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTT                                                             >  SRR4302534.6242992/1‑94 (MQ=60)

                                  ACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTT                                                             <  SRR4302534.2405903/94‑1 (MQ=60)

                                  ACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTT                                                             <  SRR4302534.317725/94‑1 (MQ=60)

                                    CACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGC                                                           <  SRR4302534.959676/94‑1 (MQ=60)

                                    CACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGC                                                           >  SRR4302534.6427065/1‑94 (MQ=60)

                                    CACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGC                                                           >  SRR4302534.1807640/1‑94 (MQ=60)

                                    CACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGC                                                           >  SRR4302534.5556585/1‑94 (MQ=60)

                                     ACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCC                                                          <  SRR4302534.5333029/94‑1 (MQ=60)

                                     ACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCC                                                          <  SRR4302534.1560951/94‑1 (MQ=60)

                                     ACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCC                                                          <  SRR4302534.2743020/94‑1 (MQ=60)

                                      CGTATTTATTTAGACGGTCCTCTGGAGGTCGATCAGTATCTTAAATTCAGGGCGCGGCAGACCTTTGTCGTAAATTAGGCGCAgacttttaacc                                                         >  SRR4302534.6325516/1‑83 (MQ=44)

                                      CGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCC                                                         >  SRR4302534.6162761/1‑94 (MQ=60)

                                        TATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCG                                                       <  SRR4302534.5734276/94‑1 (MQ=60)

                                        TATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCG                                                       <  SRR4302534.2751798/94‑1 (MQ=60)

                                         ATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGG                                                      >  SRR4302534.887863/1‑94 (MQ=60)

                                          TTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGC                                                     >  SRR4302534.1664954/1‑94 (MQ=60)

                                          TTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGC                                                     <  SRR4302534.4703110/94‑1 (MQ=60)

                                           TGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCC                                                    >  SRR4302534.4550255/1‑94 (MQ=60)

                                           TGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCC                                                    >  SRR4302534.3067946/1‑94 (MQ=60)

                                            GATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCA                                                   >  SRR4302534.2855674/1‑94 (MQ=60)

                                            GATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCA                                                   <  SRR4302534.3668055/94‑1 (MQ=60)

                                            GATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCA                                                   <  SRR4302534.2334922/94‑1 (MQ=60)

                                             ATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCAC                                                  <  SRR4302534.861511/94‑1 (MQ=60)

                                                TCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCT                                               <  SRR4302534.1961666/94‑1 (MQ=60)

                                                 CGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTC                                              <  SRR4302534.216393/94‑1 (MQ=60)

                                                 CGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTC                                              <  SRR4302534.4241096/94‑1 (MQ=60)

                                                 CGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTC                                              >  SRR4302534.2928191/1‑94 (MQ=60)

                                                 CGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTC                                              <  SRR4302534.289473/94‑1 (MQ=60)

                                                  GACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCACAATTTTGCCCCGGCCACGCTCG                                             <  SRR4302534.4201688/94‑1 (MQ=60)

                                                  GACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCG                                             >  SRR4302534.4388536/1‑94 (MQ=60)

                                                  GACGGTCCTCTGGAGGCCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTCTGCCCCGGCCACGCTCG                                             <  SRR4302534.1931678/94‑1 (MQ=60)

                                                   ACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGA                                            <  SRR4302534.5702752/94‑1 (MQ=60)

                                                     GGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACG                                          >  SRR4302534.144514/1‑94 (MQ=60)

                                                     GGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACG                                          >  SRR4302534.4957479/1‑94 (MQ=60)

                                                     GGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACG                                          >  SRR4302534.5742914/1‑94 (MQ=60)

                                                       TCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAA                                        <  SRR4302534.6170978/94‑1 (MQ=60)

                                                       TCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAA                                        >  SRR4302534.2344829/1‑94 (MQ=60)

                                                          TCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCG                                     >  SRR4302534.6452789/1‑94 (MQ=60)

                                                            TGGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCA                                   >  SRR4302534.4667075/1‑94 (MQ=60)

                                                             GGAGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAG                                  >  SRR4302534.3937538/1‑94 (MQ=60)

                                                               AGGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGA                                <  SRR4302534.6481834/94‑1 (MQ=60)

                                                                GGTCGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAA                               <  SRR4302534.4666447/94‑1 (MQ=60)

                                                                   TGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGTCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAA                            <  SRR4302534.3162532/94‑1 (MQ=60)

                                                                   CGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATTAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAA                            >  SRR4302534.4569718/1‑94 (MQ=60)

                                                                   CGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCTGGCCACGCTCGACGAAGCGCAGGAAGAA                            >  SRR4302534.4480117/1‑94 (MQ=60)

                                                                   CGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAA                            <  SRR4302534.430755/94‑1 (MQ=60)

                                                                   CGATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAA                            >  SRR4302534.2899340/1‑94 (MQ=60)

                                                                    GATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAG                           >  SRR4302534.4689486/1‑94 (MQ=60)

                                                                    GATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAG                           >  SRR4302534.3829702/1‑94 (MQ=60)

                                                                    GATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAG                           <  SRR4302534.2673884/94‑1 (MQ=60)

                                                                     ATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGA                          >  SRR4302534.4925681/1‑94 (MQ=60)

                                                                     ATCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGA                          <  SRR4302534.4693984/94‑1 (MQ=60)

                                                                      TCAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAG                         <  SRR4302534.5257542/94‑1 (MQ=60)

                                                                       CAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGTCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGG                        >  SRR4302534.140966/1‑94 (MQ=60)

                                                                       CAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGG                        >  SRR4302534.5611140/1‑94 (MQ=60)

                                                                       CAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGG                        <  SRR4302534.3594381/94‑1 (MQ=60)

                                                                       CAGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGG                        >  SRR4302534.4748687/1‑94 (MQ=60)

                                                                        AGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGG                       <  SRR4302534.3160649/94‑1 (MQ=60)

                                                                        AGAATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGG                       <  SRR4302534.6191050/94‑1 (MQ=60)

                                                                          AATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGC                     >  SRR4302534.5447305/1‑94 (MQ=60)

                                                                          AATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGC                     <  SRR4302534.755115/94‑1 (MQ=60)

                                                                           ATCCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCA                    <  SRR4302534.6252661/94‑1 (MQ=60)

                                                                             CCTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAG                  <  SRR4302534.1834797/94‑1 (MQ=60)

                                                                              CTAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGGCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGT                 >  SRR4302534.668787/1‑94 (MQ=60)

                                                                               TAAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTC                >  SRR4302534.5026493/1‑94 (MQ=60)

                                                                                AAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCG               >  SRR4302534.6624184/1‑94 (MQ=60)

                                                                                AAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCG               >  SRR4302534.6469829/1‑94 (MQ=60)

                                                                                AAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCG               >  SRR4302534.6624183/1‑94 (MQ=60)

                                                                                AAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCG               >  SRR4302534.3979100/1‑94 (MQ=60)

                                                                                AAATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCG               <  SRR4302534.3400751/94‑1 (MQ=60)

                                                                                 AATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGA              <  SRR4302534.4840870/94‑1 (MQ=60)

                                                                                 AATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGA              >  SRR4302534.4604783/1‑94 (MQ=60)

                                                                                  ATTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAA             <  SRR4302534.5472131/94‑1 (MQ=60)

                                                                                   TTCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAG            <  SRR4302534.5429013/94‑1 (MQ=60)

                                                                                    TCAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGC           <  SRR4302534.3065957/94‑1 (MQ=60)

                                                                                     CAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCG          >  SRR4302534.3141663/1‑94 (MQ=60)

                                                                                     CAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCG          >  SRR4302534.3613564/1‑94 (MQ=60)

                                                                                     CAGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCG          >  SRR4302534.4400734/1‑94 (MQ=60)

                                                                                      AGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGG         >  SRR4302534.534363/1‑94 (MQ=60)

                                                                                      AGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGG         >  SRR4302534.3304952/1‑94 (MQ=60)

                                                                                      AGGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGG         >  SRR4302534.2556171/1‑94 (MQ=60)

                                                                                       GGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGT        >  SRR4302534.1333785/1‑94 (MQ=60)

                                                                                       GGGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGT        <  SRR4302534.5239220/94‑1 (MQ=60)

                                                                                        GGCGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTA       <  SRR4302534.2970012/94‑1 (MQ=60)

                                                                                          CGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAAT     <  SRR4302534.5787705/94‑1 (MQ=60)

                                                                                          CGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAAT     >  SRR4302534.2207597/1‑94 (MQ=60)

                                                                                          CGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAAT     <  SRR4302534.5016687/94‑1 (MQ=60)

                                                                                          CGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAAT     <  SRR4302534.2414959/94‑1 (MQ=60)

                                                                                          CGCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAAT     >  SRR4302534.4173339/1‑94 (MQ=60)

                                                                                           GCGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAATG    >  SRR4302534.6206696/1‑94 (MQ=60)

                                                                                            CGGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAATGG   >  SRR4302534.820001/1‑94 (MQ=60)

                                                                                             GGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAATGGA  >  SRR4302534.6188780/1‑94 (MQ=60)

                                                                                             GGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAATGGA  <  SRR4302534.5347007/94‑1 (MQ=60)

ATAGGAGATAAATTGCGATGACCGAACCGTTAAAACCACGTATTGATTTCGACGGTCCTCTGGAGGTCGATCAGAATCCTAAATTCAGGGCGCAGCAGACCTTTGACGAAAATCAGGCGCAAAATTTTGCCCCGGCCACGCTCGACGAAGCGCAGGAAGAAGAGGGGCAAGTCGAAGCGGTAATGGA  >  NC_000913/1383518‑1383704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`