Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,715,713	T→C	T107A (ACC→GCC)	pdxH ←	pyridoxinephosphate oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,715,713	0	T	C	100.0%	865.7 / NA	248	T107A (ACC→GCC)	pdxH	pyridoxinephosphate oxidase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (144/104); total (144/104)

Only 100 of 252 total aligned reads displayed.

TATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGTATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTT  >  NC_000913/1715623‑1715802

tATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCAt                                                                                         <  2:1195094/93‑1 (MQ=255)

   cACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGcc                                                                                      >  2:4884720/1‑93 (MQ=255)

     cgcgGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCat                                                                                    <  2:6089973/93‑2 (MQ=255)

       cgggcggCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACgg                                                                                  >  2:5917465/1‑93 (MQ=255)

        gggcggCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACggg                                                                                 >  1:1811841/1‑93 (MQ=255)

         ggcggcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGa                                                                                <  2:1406932/93‑1 (MQ=255)

          gcggcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGaa                                                                               >  1:4994882/1‑93 (MQ=255)

          gcggcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGaa                                                                               >  2:2489053/1‑93 (MQ=255)

           cggcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAc                                                                              <  1:6065990/93‑1 (MQ=255)

           cggcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAc                                                                              >  2:5886685/1‑93 (MQ=255)

            ggcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAca                                                                             <  1:2733749/93‑1 (MQ=255)

             gcTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGTCACGGGAAcag                                                                            >  1:4135421/1‑93 (MQ=255)

              cTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagc                                                                           >  2:4610068/1‑93 (MQ=255)

              cTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagc                                                                           >  1:1018222/1‑93 (MQ=255)

              cTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagc                                                                           <  2:3827599/93‑1 (MQ=255)

              cTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGAGCTCAAGGGCATGACACGGGAAcaga                                                                           >  2:5216154/1‑92 (MQ=255)

               tATGATAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagca                                                                          >  1:5673693/1‑93 (MQ=255)

               tATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagca                                                                          >  2:2611070/1‑93 (MQ=255)

               tATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagca                                                                          >  1:170185/1‑93 (MQ=255)

               tATGAAAATATTTCATCACTTCGAGAGACGAAAGTCGTTCTGCTTTACCGATCAACATCACCTGGCGCTCAAGGGCATGCCACGGGAAccgca                                                                          >  2:171489/1‑93 (MQ=255)

                attaaaaTATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagcag                                                                         >  1:2167135/4‑93 (MQ=255)

                aTGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagcag                                                                         >  1:3170328/1‑93 (MQ=255)

                aTGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagcag                                                                         >  1:1324743/1‑93 (MQ=255)

                aTGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAcagcag                                                                         <  1:5970370/93‑1 (MQ=255)

                  gAAAATATTTCATCACTTCGAGTGTCGCAAGTCGTTCTGCTTTACCGATCGCCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGc                                                                       <  1:6470504/93‑1 (MQ=255)

                   aaaaTAGTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCt                                                                      <  1:2086252/93‑1 (MQ=255)

                    aaaTATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTa                                                                     <  1:3587548/93‑1 (MQ=255)

                     aaTATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTaa                                                                    >  1:1110840/1‑93 (MQ=255)

                     aaTATTTCATCACTTCGAGAGACGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTaa                                                                    >  1:521445/1‑93 (MQ=255)

                       tatTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAAcg                                                                  >  1:4550643/1‑93 (MQ=255)

                       tatTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAAcg                                                                  >  1:46764/1‑93 (MQ=255)

                         tttCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAAcgcg                                                                >  1:1504151/1‑93 (MQ=255)

                          ttCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAAcgcgc                                                               <  1:5348221/93‑1 (MQ=255)

                           tcatcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAAcgcgcg                                                              >  1:3209919/1‑93 (MQ=255)

                            catcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATTCCACGGGAACAGCAGGCTAACGCGCgg                                                             <  2:818931/93‑1 (MQ=255)

                            catcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCgg                                                             >  1:4478990/1‑93 (MQ=255)

                            catcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCgg                                                             <  2:4350154/93‑1 (MQ=255)

                            catcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCgg                                                             >  2:6060989/1‑93 (MQ=255)

                             atcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGa                                                            >  1:5446116/1‑93 (MQ=255)

                              tcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCgggt                                                           <  2:6246113/93‑3 (MQ=255)

                              tcaCTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGat                                                           <  2:1519983/93‑1 (MQ=255)

                                 cTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGattat                                                        >  1:2749961/1‑93 (MQ=255)

                                   tCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTAttt                                                      <  1:3020198/93‑1 (MQ=255)

                                     gagaGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTc                                                    >  1:2636757/1‑93 (MQ=255)

                                      agagTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCg                                                   >  2:4544728/1‑93 (MQ=255)

                                      agagTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCg                                                   >  2:2742015/1‑93 (MQ=255)

                                       gagTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGa                                                  <  1:2334633/93‑1 (MQ=255)

                                         gTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGAtt                                                >  1:4845805/1‑93 (MQ=255)

                                         gTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGAtt                                                >  2:1874336/1‑93 (MQ=255)

                                           cGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTg                                              <  1:4582422/93‑1 (MQ=255)

                                            gAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGa                                             >  2:1078452/1‑93 (MQ=255)

                                             aaaGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAt                                            <  2:2524950/93‑1 (MQ=255)

                                             aaaGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAt                                            >  1:3511598/1‑93 (MQ=255)

                                             aaaGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAt                                            >  2:1428725/1‑93 (MQ=255)

                                              aaGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAtg                                           <  2:44762/93‑1 (MQ=255)

                                              aaGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAtg                                           <  1:424952/93‑1 (MQ=255)

                                              aaGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAtg                                           >  1:704334/1‑93 (MQ=255)

                                               aGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAtgt                                          >  1:3675760/1‑93 (MQ=255)

                                               aGTCGTTCTGCTTGACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAtgt                                          <  1:5867475/93‑1 (MQ=255)

                                                   gTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCtt                                      <  2:4240077/93‑1 (MQ=255)

                                                   gTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCtt                                      >  1:3817894/1‑93 (MQ=255)

                                                   gTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCtt                                      >  2:3572659/1‑93 (MQ=255)

                                                   gTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCtt                                      >  2:6120851/1‑93 (MQ=255)

                                                   gTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCtt                                      >  2:6049280/1‑93 (MQ=255)

                                                   gTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCtt                                      >  1:6251072/1‑93 (MQ=255)

                                                    ttCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCttt                                     >  2:3975804/1‑93 (MQ=255)

                                                    ttCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCttt                                     >  1:5159037/1‑93 (MQ=255)

                                                      cTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTAc                                   <  2:1626596/93‑1 (MQ=255)

                                                      cTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTAc                                   <  2:2264781/93‑1 (MQ=255)

                                                       tGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACg                                  >  1:4774919/1‑93 (MQ=255)

                                                       tGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACg                                  >  2:2313199/1‑93 (MQ=255)

                                                        gCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACgg                                 <  1:4067114/93‑1 (MQ=255)

                                                         cTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGc                                >  2:4629776/1‑93 (MQ=255)

                                                              ccGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCg                           <  2:1765057/93‑1 (MQ=255)

                                                               cGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGa                          >  1:991912/1‑93 (MQ=255)

                                                                  tcaccatcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTTCTTTACGGCTGCCGAGGt                       <  2:2879091/93‑1 (MQ=255)

                                                                  tcaccatcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGt                       <  2:3054915/93‑1 (MQ=255)

                                                                  tcaccatcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGt                       >  1:2977499/1‑93 (MQ=255)

                                                                   caccatcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGtt                      <  1:4365459/93‑1 (MQ=255)

                                                                   caccatcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGtt                      <  2:6194938/93‑1 (MQ=255)

                                                                   caccatcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGtt                      >  2:2836760/1‑93 (MQ=255)

                                                                      catcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGgt                   <  2:5129008/93‑1 (MQ=255)

                                                                       atcaccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGgtg                  >  2:3309598/1‑93 (MQ=255)

                                                                         caccTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTa                >  2:3582784/1‑93 (MQ=255)

                                                                          accTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTaa               >  2:3426699/1‑93 (MQ=255)

                                                                              ggCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAaca           >  2:5354172/1‑93 (MQ=255)

                                                                              ggCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAaca           >  2:2980595/1‑93 (MQ=255)

                                                                               gcgcTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAacacac          <  2:5781252/93‑1 (MQ=255)

                                                                               gcgcTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAacac          <  1:2603185/93‑1 (MQ=255)

                                                                                 gcTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCa        <  2:5685149/93‑1 (MQ=255)

                                                                                  cTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCAt       >  1:1217862/1‑93 (MQ=255)

                                                                                  cTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCAt       >  2:6375216/1‑93 (MQ=255)

                                                                                   tCAAGGGCATGCCACGGGAACAGCAGGCTAACGCTCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATg      <  1:5831306/93‑1 (MQ=255)

                                                                                   tCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATg      >  1:2548964/1‑93 (MQ=255)

                                                                                    cAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGc     >  2:5413361/1‑93 (MQ=255)

                                                                                     aaGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGcc    >  1:1481025/1‑93 (MQ=255)

                                                                                     aaGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGcc    <  2:3758657/93‑1 (MQ=255)

                                                                                      aGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCt   <  2:4936848/93‑1 (MQ=255)

                                                                                      aGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCt   >  1:973515/1‑93 (MQ=255)

                                                                                       gggCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCtt  <  2:6411895/93‑1 (MQ=255)

TATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGTATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTT  >  NC_000913/1715623‑1715802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGTATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTTTTTC  >  NC_000913/1715620‑1715806

GGCTATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGC                                                                                               <  SRR4302534.3937155/94‑1 (MQ=60)

  CTATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCAT                                                                                             <  SRR4302534.877864/94‑1 (MQ=60)

      CACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCA                                                                                         >  SRR4302534.2640617/1‑94 (MQ=60)

       ACGTGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCTCCATCACCTGGCGCTCAAGGGCATGCCAC                                                                                        <  SRR4302534.615795/94‑1 (MQ=60)

         GCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGG                                                                                      <  SRR4302534.3257424/94‑1 (MQ=60)

          CGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGG                                                                                     >  SRR4302534.1858899/1‑94 (MQ=60)

          CGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGG                                                                                     >  SRR4302534.3063631/1‑94 (MQ=60)

          CGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGG                                                                                     >  SRR4302534.1524817/1‑94 (MQ=60)

           GGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGA                                                                                    <  SRR4302534.2516735/94‑1 (MQ=60)

           GGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGA                                                                                    <  SRR4302534.3862931/94‑1 (MQ=60)

            GGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAA                                                                                   >  SRR4302534.5129976/1‑94 (MQ=60)

             GCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAAC                                                                                  <  SRR4302534.5442279/94‑1 (MQ=60)

              CGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACA                                                                                 <  SRR4302534.6230914/94‑1 (MQ=60)

              CGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACA                                                                                 >  SRR4302534.5849263/1‑94 (MQ=60)

              CGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACA                                                                                 <  SRR4302534.488532/94‑1 (MQ=60)

               GGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGTCACGGGAACAG                                                                                >  SRR4302534.4246989/1‑94 (MQ=60)

               GGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAG                                                                                <  SRR4302534.2805821/94‑1 (MQ=60)

                GCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGC                                                                               >  SRR4302534.1044438/1‑94 (MQ=60)

                 CTATGATAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCA                                                                              >  SRR4302534.5827301/1‑94 (MQ=60)

                 CTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCA                                                                              <  SRR4302534.232004/94‑1 (MQ=60)

                 CTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCA                                                                              >  SRR4302534.3147230/1‑94 (MQ=60)

                 CTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCA                                                                              >  SRR4302534.2745153/1‑94 (MQ=60)

                 CTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCA                                                                              >  SRR4302534.174685/1‑94 (MQ=60)

                  TATTAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAG                                                                             >  SRR4302534.2224371/1‑94 (MQ=60)

                  TATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAG                                                                             >  SRR4302534.1359668/1‑94 (MQ=60)

                  TATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAG                                                                             >  SRR4302534.3253968/1‑94 (MQ=60)

                   ATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGG                                                                            <  SRR4302534.3717002/94‑1 (MQ=60)

                   ATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGG                                                                            >  SRR4302534.3467693/1‑94 (MQ=60)

                   ATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGG                                                                            <  SRR4302534.6132527/94‑1 (MQ=60)

                   ATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGG                                                                            >  SRR4302534.4458142/1‑94 (MQ=60)

                     GAAAATATTTCATCACTTCGAGTGTCGCAAGTCGTTCTGCTTTACCGATCGCCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCT                                                                          <  SRR4302534.6644792/94‑1 (MQ=60)

                     GAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCT                                                                          >  SRR4302534.272246/1‑94 (MQ=60)

                      AAAATAGTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTA                                                                         <  SRR4302534.2140927/94‑1 (MQ=60)

                       AAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAA                                                                        <  SRR4302534.3684043/94‑1 (MQ=60)

                       AAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAA                                                                        <  SRR4302534.900446/94‑1 (MQ=60)

                       AAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAA                                                                        >  SRR4302534.1139818/1‑94 (MQ=60)

                       AAATATTTCATCACTTCGAGAGACGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAA                                                                        >  SRR4302534.534410/1‑94 (MQ=60)

                         ATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACG                                                                      >  SRR4302534.4674002/1‑94 (MQ=60)

                         ATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACG                                                                      <  SRR4302534.4714806/94‑1 (MQ=60)

                         ATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACG                                                                      >  SRR4302534.48015/1‑94 (MQ=60)

                          TATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGC                                                                     >  SRR4302534.422412/1‑94 (MQ=60)

                          TATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGC                                                                     >  SRR4302534.1011637/1‑94 (MQ=60)

                           ATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCG                                                                    >  SRR4302534.1543722/1‑94 (MQ=60)

                             TTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCG                                                                  >  SRR4302534.3936128/1‑94 (MQ=60)

                             TTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCG                                                                  >  SRR4302534.3295095/1‑94 (MQ=60)

                             TTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCG                                                                  <  SRR4302534.5492424/94‑1 (MQ=60)

                             TTCATCACTCCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGCCTAACGCGCG                                                                  <  SRR4302534.1306346/94‑1 (MQ=60)

                              TCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGG                                                                 >  SRR4302534.4600160/1‑94 (MQ=60)

                               CATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGA                                                                >  SRR4302534.5592845/1‑94 (MQ=60)

                               CATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGA                                                                >  SRR4302534.6126610/1‑94 (MQ=60)

                                 TCTCTCCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATT                                                              <  SRR4302534.952841/94‑1 (MQ=60)

                                  CAGTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTA                                                             >  SRR4302534.6547206/1‑94 (MQ=60)

                                  CACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTA                                                             >  SRR4302534.495571/1‑94 (MQ=60)

                                  CACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTA                                                             >  SRR4302534.1392552/1‑94 (MQ=60)

                                   ACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTAT                                                            >  SRR4302534.2822406/1‑94 (MQ=60)

                                    CTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATT                                                           >  SRR4302534.6007207/1‑94 (MQ=60)

                                     TTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTT                                                          <  SRR4302534.4188050/94‑1 (MQ=60)

                                     CTCGATAGTCGAAAGTCGTTCTGCTTTACCGCACCCCATCACCGGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCCCGGATTATTT                                                          <  SRR4302534.3118848/94‑1 (MQ=60)

                                      TCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTT                                                         <  SRR4302534.3099287/94‑1 (MQ=60)

                                      TCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTT                                                         <  SRR4302534.2805992/94‑1 (MQ=60)

                                       CGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTC                                                        >  SRR4302534.2706514/1‑94 (MQ=60)

                                        GAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCG                                                       <  SRR4302534.4646493/94‑1 (MQ=60)

                                        GAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCG                                                       >  SRR4302534.5398713/1‑94 (MQ=60)

                                        GAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCG                                                       <  SRR4302534.1167557/94‑1 (MQ=60)

                                          GAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGAT                                                     >  SRR4302534.2683463/1‑94 (MQ=60)

                                          GAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGAT                                                     <  SRR4302534.2396561/94‑1 (MQ=60)

                                           AGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATT                                                    <  SRR4302534.5341564/94‑1 (MQ=60)

                                           AGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATT                                                    >  SRR4302534.5157343/1‑94 (MQ=60)

                                           AGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATT                                                    >  SRR4302534.4977277/1‑94 (MQ=60)

                                           AGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATT                                                    <  SRR4302534.5689075/94‑1 (MQ=60)

                                            GTCGAAAGTCGTTCTGCTTTACCGATCACCATCCCCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTT                                                   >  SRR4302534.4961212/1‑94 (MQ=60)

                                              CGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGA                                                 <  SRR4302534.4706739/94‑1 (MQ=60)

                                              CGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGA                                                 >  SRR4302534.4460550/1‑94 (MQ=60)

                                               GAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGGT                                                >  SRR4302534.1157126/1‑94 (MQ=60)

                                               GAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAT                                                >  SRR4302534.3606063/1‑94 (MQ=60)

                                               GAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAT                                                >  SRR4302534.5992638/1‑94 (MQ=60)

                                               GAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAT                                                >  SRR4302534.4512101/1‑94 (MQ=60)

                                               GAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGAT                                                <  SRR4302534.4164988/94‑1 (MQ=60)

                                                AAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATG                                               >  SRR4302534.721606/1‑94 (MQ=60)

                                                 AAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGT                                              >  SRR4302534.1954529/1‑94 (MQ=60)

                                                 AAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGT                                              <  SRR4302534.435810/94‑1 (MQ=60)

                                                 AAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGT                                              <  SRR4302534.665679/94‑1 (MQ=60)

                                                 AAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGT                                              >  SRR4302534.3774566/1‑94 (MQ=60)

                                                  AGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTG                                             >  SRR4302534.1414537/1‑94 (MQ=60)

                                                  AGTCGTTCTGCTTGACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTG                                             <  SRR4302534.6026789/94‑1 (MQ=60)

                                                     CGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTT                                          >  SRR4302534.3920460/1‑94 (MQ=60)

                                                     CGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTT                                          >  SRR4302534.6435001/1‑94 (MQ=60)

                                                     CGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTT                                          >  SRR4302534.6420562/1‑94 (MQ=60)

                                                      GTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTT                                         >  SRR4302534.3675865/1‑94 (MQ=60)

                                                      GTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTT                                         >  SRR4302534.5298140/1‑94 (MQ=60)

                                                      GTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTT                                         <  SRR4302534.6139657/94‑1 (MQ=60)

                                                         CTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACG                                      >  SRR4302534.4904588/1‑94 (MQ=60)

                                                         CTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACG                                      >  SRR4302534.2229330/1‑94 (MQ=60)

                                                           GCTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGC                                    <  SRR4302534.4176233/94‑1 (MQ=60)

                                                            CTTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCT                                   >  SRR4302534.5004619/1‑94 (MQ=60)

                                                             TTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTG                                  <  SRR4302534.4332156/94‑1 (MQ=60)

                                                             TTTACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTG                                  >  SRR4302534.5238625/1‑94 (MQ=60)

                                                               TACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCC                                >  SRR4302534.4648632/1‑94 (MQ=60)

                                                               TACCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCC                                <  SRR4302534.2624312/94‑1 (MQ=60)

                                                               TACCGATCAACATCGCCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCC                                <  SRR4302534.1699315/94‑1 (MQ=60)

                                                                 CCGATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGA                              >  SRR4302534.1017295/1‑94 (MQ=60)

                                                                   GATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTACTTTCGATTTGATGTGATTTACGGCTGCCGAGG                            >  SRR4302534.2605126/1‑94 (MQ=60)

                                                                    ATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGT                           >  SRR4302534.5684296/1‑94 (MQ=60)

                                                                    ATCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGT                           >  SRR4302534.3055430/1‑94 (MQ=60)

                                                                     TCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTT                          <  SRR4302534.1858763/94‑1 (MQ=60)

                                                                     TCACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTT                          >  SRR4302534.2186055/1‑94 (MQ=60)

                                                                      CACCATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTG                         <  SRR4302534.4483153/94‑1 (MQ=60)

                                                                         CATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTG                      <  SRR4302534.4702913/94‑1 (MQ=60)

                                                                         CATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTG                      >  SRR4302534.6253106/1‑94 (MQ=60)

                                                                         CATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTG                      >  SRR4302534.3002209/1‑94 (MQ=60)

                                                                         CATCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTG                      >  SRR4302534.5508696/1‑94 (MQ=60)

                                                                          ACCACCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTtcccagggtggtgg                     >  SRR4302534.3691714/1‑80 (MQ=60)

                                                                              CCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAA                 <  SRR4302534.1072575/94‑1 (MQ=60)

                                                                              CCTGGCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAA                 <  SRR4302534.919249/94‑1 (MQ=60)

                                                                                  GCGCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACC             <  SRR4302534.2672032/94‑1 (MQ=60)

                                                                                    GCTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCAT           >  SRR4302534.1249917/1‑94 (MQ=60)

                                                                                     CTCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATG          >  SRR4302534.2616549/1‑94 (MQ=60)

                                                                                      TCAAGGGCATGCCACGGGAACAGCAGGCTAACGCTCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGC         <  SRR4302534.5989591/94‑1 (MQ=60)

                                                                                      TCAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGC         <  SRR4302534.1932181/94‑1 (MQ=60)

                                                                                       CAAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCC        >  SRR4302534.1519973/1‑94 (MQ=60)

                                                                                        AAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCT       <  SRR4302534.1629742/94‑1 (MQ=60)

                                                                                        AAGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCT       >  SRR4302534.998323/1‑94 (MQ=60)

                                                                                         AGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTT      <  SRR4302534.304410/94‑1 (MQ=60)

                                                                                         AGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTT      >  SRR4302534.3568665/1‑94 (MQ=60)

                                                                                         AGGGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTT      <  SRR4302534.476863/94‑1 (MQ=60)

                                                                                           GGCATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTTTT    <  SRR4302534.5438386/94‑1 (MQ=60)

                                                                                             CATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTTTTTC  >  SRR4302534.4866893/1‑94 (MQ=60)

GGCTATCACGCGGGCGGCTATGAAAATATTTCATCACTTCGAGAGTCGAAAGTCGTTCTGCTTTACCGATCACCATCACCTGGCGCTCAAGGGTATGCCACGGGAACAGCAGGCTAACGCGCGGATTATTTTCGATTTGATGTGCTTTACGGCTGCCGAGGTTGGTGTAAAACACCATGCCTTTTTC  >  NC_000913/1715620‑1715806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`