Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,255,594 |
Δ1 bp |
coding (4/1278 nt) |
yhaO ← |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,255,593 | 0 | G | . | 100.0%
| 1059.8
/ NA
| 227 | coding (5/1278 nt) | yhaO | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (102/125); total (102/125) |
Only 100 of 244 total aligned reads displayed.
GCCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTT > NC_000913/3255502‑3255682
|
gcCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgc > 1:5101092/1‑92 (MQ=255)
ccAATCTCCATCCCGATACTCATAATCGCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgca < 2:3377104/93‑3 (MQ=255)
ccAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgca < 1:4879452/93‑3 (MQ=255)
cAATCGCCATCCCGATACTCATGATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgcac > 1:1547331/1‑90 (MQ=255)
tCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAc > 2:4271627/1‑93 (MQ=255)
gCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAccc > 1:4847854/1‑93 (MQ=255)
cccATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAccc < 2:428864/92‑1 (MQ=255)
ccATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccg > 1:4611192/1‑93 (MQ=255)
ccATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccg > 2:4902495/1‑93 (MQ=255)
cATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgc > 1:6026543/1‑93 (MQ=255)
aTCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgcc > 2:2914887/1‑93 (MQ=255)
aTCCCGATACTCATAATCACCCAGCCGAAGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTAACTCATTCCA‑GCACGACccgcc > 2:3142010/1‑93 (MQ=255)
tCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgccg > 2:1603444/1‑93 (MQ=255)
cccGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCgg < 1:1018680/93‑1 (MQ=255)
ccGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCggg < 2:60086/93‑1 (MQ=255)
ccGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCggg > 1:437647/1‑93 (MQ=255)
gATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGt > 1:2464572/1‑93 (MQ=255)
gATACTCATAATCACCCAGCCGGTCTCAGTACTGTCGAATTGGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGt < 2:5386248/93‑1 (MQ=255)
cTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGaa > 2:2606770/1‑93 (MQ=255)
tCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg < 2:4693139/93‑1 (MQ=255)
tCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg < 1:2348453/93‑1 (MQ=255)
cATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgc < 1:282668/93‑2 (MQ=255)
cATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgc < 2:4707652/93‑2 (MQ=255)
tAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgt > 2:192281/1‑90 (MQ=255)
aaTCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgtc < 1:2642144/93‑5 (MQ=255)
cACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGc < 1:3328722/93‑1 (MQ=255)
cACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGc < 1:5710471/93‑1 (MQ=255)
aCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCa > 1:1791786/1‑93 (MQ=255)
cccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCaa < 2:1717976/93‑1 (MQ=255)
cccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCaa < 1:972232/93‑1 (MQ=255)
ccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAAt > 2:3723832/1‑93 (MQ=255)
gCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGAc < 2:6038920/93‑1 (MQ=255)
cGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGc < 2:2212636/93‑1 (MQ=255)
ggTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc < 1:5394941/93‑1 (MQ=255)
cgtgtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc < 1:1962183/92‑1 (MQ=255)
tgtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCtt > 2:3252003/1‑93 (MQ=255)
gtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGCCGAA‑GCGTCTGCAATGACGCCttt > 2:2697569/1‑93 (MQ=255)
tCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa > 2:3220062/1‑93 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTc > 2:5821280/1‑93 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTc > 1:3449166/1‑93 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTc > 2:880332/1‑93 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTc < 2:417008/93‑1 (MQ=255)
tACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg > 2:4060987/1‑93 (MQ=255)
tACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg > 2:5199503/1‑93 (MQ=255)
aCTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGa > 1:5953766/1‑93 (MQ=255)
cTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGAt > 2:2796169/1‑93 (MQ=255)
tGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATg > 1:1064700/1‑93 (MQ=255)
tGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATg < 1:3279958/93‑1 (MQ=255)
gTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGc > 2:4393143/1‑93 (MQ=255)
gTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGc < 1:5781334/93‑1 (MQ=255)
tCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCa > 2:458002/1‑93 (MQ=255)
cGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCaa < 1:6079343/93‑1 (MQ=255)
aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAtt < 1:2187347/93‑1 (MQ=255)
aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt < 1:3014047/93‑1 (MQ=255)
aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt > 2:736170/1‑93 (MQ=255)
tttGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc > 1:4533645/1‑93 (MQ=255)
tttGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc < 1:3644473/93‑1 (MQ=255)
tgtGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc < 2:125825/91‑1 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCAt < 1:4327925/93‑1 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCAt > 1:5593938/1‑93 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCAt > 2:1112081/1‑93 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTACAt > 2:1856477/1‑93 (MQ=255)
tCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa > 2:2780705/1‑93 (MQ=255)
tCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa > 2:1783240/1‑93 (MQ=255)
tCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa < 1:2948195/93‑1 (MQ=255)
cGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt > 1:1716251/1‑93 (MQ=255)
gCTTCTCGCCACTCGCTCTCACTCAGTCCA‑GCACGACCCGCCGGGGTCGAAGGAG‑CTGCAAGTAGTGCTTTATTCGATGCAATTTACATAAtt > 1:3570729/1‑93 (MQ=255)
ccTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAtt < 1:690844/92‑1 (MQ=255)
ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCTAA‑GCGTCTGCAATGACGTCTTTATTCGATGCAATTTCCATAATTtc > 1:1228099/1‑93 (MQ=255)
ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc < 2:3277659/93‑1 (MQ=255)
tctcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct > 2:2873462/1‑93 (MQ=255)
ctcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtctc < 1:782558/93‑1 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 2:5141419/93‑1 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 2:357523/93‑1 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 2:699200/93‑1 (MQ=255)
aCTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa > 2:631059/1‑93 (MQ=255)
aCTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa < 1:1131205/93‑1 (MQ=255)
cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAat < 1:2756705/93‑1 (MQ=255)
tCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAata < 1:3025538/93‑1 (MQ=255)
gCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtt < 2:3873609/93‑1 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGTGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAttt < 2:36717/93‑1 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAttt > 2:4952015/1‑93 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAttt > 1:1313892/1‑93 (MQ=255)
cctcactcaTTCCA‑GCACGACCCGCCGGGTTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtttt < 1:1405791/92‑1 (MQ=255)
ctcactcaTTCCA‑GCACGACCCGCCGGTGTCGAA‑GCGTCTGCAATGACTCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 2:534062/93‑1 (MQ=255)
ctcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg > 2:4454402/1‑93 (MQ=255)
ctcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 2:3349320/93‑1 (MQ=255)
ctcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 2:5652396/93‑1 (MQ=255)
tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGt < 1:4079829/93‑1 (MQ=255)
tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGt > 1:531628/1‑93 (MQ=255)
cactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa < 2:2065277/93‑1 (MQ=255)
cctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAg < 2:244742/92‑1 (MQ=255)
actcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAg > 2:1277535/1‑93 (MQ=255)
actcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAg > 1:4663890/1‑93 (MQ=255)
ctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAgg < 2:2992872/93‑1 (MQ=255)
ctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAgg < 2:4784292/93‑1 (MQ=255)
ctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAgg < 2:2011181/93‑1 (MQ=255)
caTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGc < 2:5795739/93‑1 (MQ=255)
caTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGc > 1:5565822/1‑93 (MQ=255)
aTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCt > 2:2333044/1‑93 (MQ=255)
|
GCCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTT > NC_000913/3255502‑3255682
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT > NC_000913/3255501‑3255687
|
CGCCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGC > SRR4302532.5276471/1‑94 (MQ=60)
CCAATCGCCATCCCGATACTCATGATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCAC > SRR4302532.1599613/1‑94 (MQ=60)
CCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCAC < SRR4302532.5047218/94‑1 (MQ=60)
AATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGA > SRR4302532.5243571/1‑94 (MQ=60)
CGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCC > SRR4302532.3119103/1‑94 (MQ=60)
CGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCC > SRR4302532.5014723/1‑94 (MQ=60)
GCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCG > SRR4302532.4768408/1‑94 (MQ=60)
GCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCG < SRR4302532.1433109/94‑1 (MQ=60)
CCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGC > SRR4302532.6234695/1‑94 (MQ=60)
CCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGC > SRR4302532.6234696/1‑94 (MQ=60)
ATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCG > SRR4302532.2978390/1‑94 (MQ=60)
CCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGG < SRR4302532.4767484/94‑1 (MQ=60)
CCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGG < SRR4302532.1053240/94‑1 (MQ=60)
CCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGG > SRR4302532.3730179/1‑94 (MQ=60)
CCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGG > SRR4302532.452802/1‑94 (MQ=60)
CCCGATACTCATAACCGCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGG < SRR4302532.623875/94‑1 (MQ=60)
CGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGT > SRR4302532.4581297/1‑94 (MQ=60)
CGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGT > SRR4302532.2546598/1‑94 (MQ=60)
GATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTC > SRR4302532.4381931/1‑94 (MQ=60)
aaactcaaatgccCCCAGCCGGTGTCAGTACTGTCGAATTTGATCCCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCG < SRR4302532.4687497/81‑1 (MQ=60)
ATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTAACTCATTCCA‑TCACGACCCGCCGGGGTCG > SRR4302532.2684525/1‑94 (MQ=60)
CTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAG > SRR4302532.2830861/1‑94 (MQ=60)
CTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAG < SRR4302532.5987181/94‑1 (MQ=60)
TCATAATCCCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC < SRR4302532.3015874/94‑1 (MQ=60)
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC < SRR4302532.2426793/94‑1 (MQ=60)
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC > SRR4302532.3192584/1‑94 (MQ=60)
CCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC < SRR4302532.1352439/94‑1 (MQ=60)
CATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGcg < SRR4302532.292437/94‑3 (MQ=60)
ATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGT > SRR4302532.5812003/1‑94 (MQ=60)
ATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGT < SRR4302532.5448871/94‑1 (MQ=60)
AATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCT < SRR4302532.2730750/94‑1 (MQ=60)
CACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCA < SRR4302532.5909529/94‑1 (MQ=60)
CACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCA < SRR4302532.3439722/94‑1 (MQ=60)
CACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCA > SRR4302532.1851649/1‑94 (MQ=60)
ACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA > SRR4302532.2740802/1‑94 (MQ=60)
CCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑T < SRR4302532.3698005/94‑1 (MQ=60)
CCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑T < SRR4302532.1005396/94‑1 (MQ=60)
ACCAGCCGTTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGTTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑T < SRR4302532.6337088/94‑1 (MQ=60)
CCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TG < SRR4302532.5027256/94‑1 (MQ=60)
CGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGAC < SRR4302532.5263648/94‑1 (MQ=60)
GCGGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACG < SRR4302532.2907697/94‑1 (MQ=60)
GCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACC > SRR4302532.1848113/1‑94 (MQ=60)
CGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCC > SRR4302532.2073868/1‑94 (MQ=60)
GGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCT < SRR4302532.5581866/94‑1 (MQ=60)
GGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCT > SRR4302532.811230/1‑94 (MQ=60)
CGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCT < SRR4302532.2027343/94‑1 (MQ=60)
GTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTT > SRR4302532.5675859/1‑94 (MQ=60)
GTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTT > SRR4302532.726159/1‑94 (MQ=60)
GTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTA > SRR4302532.5823655/1‑94 (MQ=60)
AGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTC > SRR4302532.6227934/1‑94 (MQ=60)
AGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTC > SRR4302532.3564698/1‑94 (MQ=60)
GTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCG < SRR4302532.1932371/94‑1 (MQ=60)
TACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGA > SRR4302532.5540876/1‑94 (MQ=60)
TACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGA > SRR4302532.6159751/1‑94 (MQ=60)
CTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATG > SRR4302532.1100518/1‑94 (MQ=60)
TGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGC < SRR4302532.3389053/94‑1 (MQ=60)
TGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGC > SRR4302532.4965364/1‑94 (MQ=60)
GTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCA < SRR4302532.5982422/94‑1 (MQ=60)
TCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAA < SRR4302532.3107835/94‑1 (MQ=60)
CGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAAT < SRR4302532.6289274/94‑1 (MQ=60)
GAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATT < SRR4302532.5774137/94‑1 (MQ=60)
AATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTT < SRR4302532.1530282/94‑1 (MQ=60)
AATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTT < SRR4302532.2260307/94‑1 (MQ=60)
ATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTC < SRR4302532.3113523/94‑1 (MQ=60)
ATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTC > SRR4302532.4688383/1‑94 (MQ=60)
TTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCC < SRR4302532.3766763/94‑1 (MQ=60)
TTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCA > SRR4302532.3440067/1‑94 (MQ=60)
TTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCA > SRR4302532.145296/1‑94 (MQ=60)
TGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCAT > SRR4302532.5788120/1‑94 (MQ=60)
GATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATA < SRR4302532.1756356/94‑1 (MQ=60)
GATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATA < SRR4302532.4474155/94‑1 (MQ=60)
gtctCTTCTCGCCACTCGCACTCACACATTCCA‑GCACGTCCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAA < SRR4302532.1142302/90‑1 (MQ=60)
ATCGCTCCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAA < SRR4302532.2445498/94‑1 (MQ=60)
TCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT > SRR4302532.4278690/1‑94 (MQ=60)
TCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT < SRR4302532.3045986/94‑1 (MQ=60)
TCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT > SRR4302532.1774100/1‑94 (MQ=60)
TCGCTGCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT < SRR4302532.247945/94‑1 (MQ=60)
CGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATT > SRR4302532.3222488/1‑94 (MQ=60)
CGCTTCTCGCCACTCGCTCTCACTCAGTCCA‑GCACGACCCGCCGGGGTCGAAGGAG‑CTGCAAGTAGTG‑‑‑‑CTTTATTCGATGCAATTTACATAATT > SRR4302532.3690214/1‑94 (MQ=37)
CCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTT < SRR4302532.714559/94‑1 (MQ=60)
CTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCTAA‑GCGTCTGCAA‑‑‑‑TGACGTCTTTATTCGATGCAATTTCCATAATTTC > SRR4302532.1269173/1‑94 (MQ=60)
CTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTC > SRR4302532.1269172/1‑94 (MQ=60)
CTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTC < SRR4302532.3470789/94‑1 (MQ=60)
TTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCT < SRR4302532.2276247/94‑1 (MQ=60)
TCTCGCCAGCCGCTCGCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTC < SRR4302532.4810277/94‑1 (MQ=60)
CTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCG < SRR4302532.809449/94‑1 (MQ=60)
CGCCGCTCGCTCTCACTCATTCCA‑GCACGACCCCCCGGGTTCGAA‑GCGTCTGCAA‑‑‑‑TAACGCCTCTATTCGATGCAATTTCCATAATTTCTCACT < SRR4302532.3100289/94‑1 (MQ=58)
CGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCT < SRR4302532.5995957/94‑1 (MQ=60)
ACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAAT < SRR4302532.1168952/94‑1 (MQ=60)
CTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATA < SRR4302532.1007149/94‑1 (MQ=60)
CTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATA < SRR4302532.2849278/94‑1 (MQ=60)
CTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATA < SRR4302532.3434870/94‑1 (MQ=60)
TCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAT < SRR4302532.3125345/94‑1 (MQ=60)
TCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCGCGCTCAATAG > SRR4302532.5643001/1‑94 (MQ=60)
CGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATT > SRR4302532.3930083/1‑94 (MQ=60)
GCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTT > SRR4302532.1357825/1‑94 (MQ=60)
CTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTT < SRR4302532.4975681/94‑1 (MQ=60)
CTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTT < SRR4302532.5972340/94‑1 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.1077303/94‑1 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG > SRR4302532.4702934/1‑94 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.1227999/94‑1 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.3667103/94‑1 (MQ=60)
CCTCACTCATTCCA‑GCACGACCCGCCGGGTTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.1452880/94‑1 (MQ=60)
CTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGT > SRR4302532.550186/1‑94 (MQ=60)
TCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTA < SRR4302532.4216824/94‑1 (MQ=60)
CACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAG < SRR4302532.901109/94‑1 (MQ=60)
CACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAG > SRR4302532.4822903/1‑94 (MQ=60)
TCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGC > SRR4302532.4506929/1‑94 (MQ=60)
TCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGC > SRR4302532.5759091/1‑94 (MQ=60)
ATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTT > SRR4302532.2178403/1‑94 (MQ=60)
TTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTA < SRR4302532.1767858/94‑1 (MQ=60)
CCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATT < SRR4302532.3910091/94‑1 (MQ=60)
CCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATT > SRR4302532.5767659/1‑94 (MQ=60)
caGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTA < SRR4302532.498469/92‑1 (MQ=60)
AGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT < SRR4302532.275208/94‑1 (MQ=60)
AGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT < SRR4302532.3019487/94‑1 (MQ=60)
AGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT > SRR4302532.4002486/1‑94 (MQ=60)
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CGCCAATCGCCATCCCGATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT > NC_000913/3255501‑3255687
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
