Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,255,616 |
Δ1 bp |
intergenic (‑19/+312) |
yhaO ← / ← yhaP |
putative transport system permease protein/putative L‑serine dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,255,615 | 0 | G | . | 100.0%
| 1022.0
/ NA
| 217 | intergenic (‑18/+313) | yhaO/yhaP | putative transport system permease protein/putative L‑serine dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (90/127); total (90/127) |
Only 100 of 239 total aligned reads displayed.
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCA > NC_000913/3255522‑3255703
|
tCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg < 2:4693139/93‑1 (MQ=255)
tCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg < 1:2348453/93‑1 (MQ=255)
ccATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg < 1:1308637/92‑1 (MQ=255)
cATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgc < 1:282668/93‑2 (MQ=255)
aTAATCACCCAGCCGGTCTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGCCGAAgcg > 2:5030385/1‑91 (MQ=255)
tAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgt > 2:4091507/1‑90 (MQ=255)
tAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgt > 2:192281/1‑90 (MQ=255)
tAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgt > 1:5617105/1‑90 (MQ=255)
aaTCCCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgtc < 2:5354447/93‑5 (MQ=255)
aaTCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcgtc < 1:2642144/93‑5 (MQ=255)
aCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCa > 1:1791786/1‑93 (MQ=255)
cccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCaa < 1:3578287/93‑1 (MQ=255)
cccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCaa > 1:2651819/1‑93 (MQ=255)
cccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCaa < 2:77005/93‑1 (MQ=255)
ccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAAt > 2:3723832/1‑93 (MQ=255)
cAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATg > 2:1112595/1‑93 (MQ=255)
aGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGa < 2:588313/93‑1 (MQ=255)
ggTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc > 2:269980/1‑93 (MQ=255)
ggTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc > 1:2006932/1‑93 (MQ=255)
ggTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc < 1:5394941/93‑1 (MQ=255)
gtgtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCt > 1:784289/1‑93 (MQ=255)
tgtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCtt > 1:702148/1‑93 (MQ=255)
gtCAGTACTGTCGAATTTGATCGCTTCTCGGCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCttt < 2:1727388/93‑1 (MQ=255)
aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTAtt < 2:5553091/93‑1 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTc > 1:6020038/1‑93 (MQ=255)
tACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg > 2:5199503/1‑93 (MQ=255)
tACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg > 2:4060987/1‑93 (MQ=255)
tCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCa > 2:458002/1‑93 (MQ=255)
cGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCaa < 2:1838328/93‑1 (MQ=255)
gAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAt < 1:5580396/93‑1 (MQ=255)
aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAtt < 1:2187347/93‑1 (MQ=255)
aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAtt < 1:1480390/93‑1 (MQ=255)
aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt < 1:3014047/93‑1 (MQ=255)
tttGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc > 2:3461609/1‑93 (MQ=255)
tgtGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc < 2:125825/91‑1 (MQ=255)
ttGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTcc < 2:4226844/93‑1 (MQ=255)
tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCa > 1:3329061/1‑93 (MQ=255)
tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCa > 1:140553/1‑93 (MQ=255)
taTCGCTTCTCGCCCCTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCAt < 2:4330453/92‑1 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCAt < 1:4327925/93‑1 (MQ=255)
gtctcTTCTCGCCACTCGCACTCACACATTCCA‑GCACGTCCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATa < 1:1105350/89‑1 (MQ=255)
tCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa > 2:2146609/1‑93 (MQ=255)
tCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa > 2:1783240/1‑93 (MQ=255)
cGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt > 1:1716251/1‑93 (MQ=255)
gCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAtt > 2:68038/1‑93 (MQ=255)
ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc > 2:2782366/1‑93 (MQ=255)
ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc < 2:3277659/93‑1 (MQ=255)
ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc > 2:1954185/1‑93 (MQ=255)
tctcGCCAGCCGCTCGCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct < 1:4651680/93‑1 (MQ=255)
tctcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct < 2:5743469/93‑1 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 2:699200/93‑1 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 2:5141419/93‑1 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 1:5794533/93‑1 (MQ=255)
cACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCa > 2:6012599/1‑93 (MQ=255)
aCTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa > 2:631059/1‑93 (MQ=255)
cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAat < 1:2756705/93‑1 (MQ=255)
cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAat < 1:3324032/93‑1 (MQ=255)
cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAat < 1:973901/93‑1 (MQ=255)
gCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtt < 2:3873609/93‑1 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGTGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAttt < 2:36717/93‑1 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAttt < 1:5771511/93‑1 (MQ=255)
tctctctcATTCCAGGC‑CGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtttt < 2:4414361/93‑1 (MQ=255)
tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtttt < 1:1188273/93‑1 (MQ=255)
tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtttt < 1:3548373/93‑1 (MQ=255)
tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtttt < 1:1042160/93‑1 (MQ=255)
tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGt > 1:531628/1‑93 (MQ=255)
cactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa < 2:3220043/93‑1 (MQ=255)
cactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa < 2:323379/93‑1 (MQ=255)
cactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa > 2:3366874/1‑93 (MQ=255)
cctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAg < 2:244742/92‑1 (MQ=255)
actcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAg > 2:1277535/1‑93 (MQ=255)
tcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAggg > 2:2551090/1‑93 (MQ=255)
tcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAggg < 2:3297392/93‑1 (MQ=255)
caTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGc < 2:4847854/93‑1 (MQ=255)
caTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGc < 2:5795739/93‑1 (MQ=255)
caTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGc > 1:5565822/1‑93 (MQ=255)
aTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCt > 2:2333044/1‑93 (MQ=255)
ttCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCtt < 2:138643/93‑1 (MQ=255)
ccagCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCttat > 2:2941763/4‑93 (MQ=255)
cagCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCttatt < 2:3981779/91‑1 (MQ=255)
cagCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCttatt < 1:481668/91‑1 (MQ=255)
agCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCttatta < 1:2922191/92‑1 (MQ=255)
agCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCttatta < 2:284445/92‑1 (MQ=255)
gCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTtattat < 2:930338/93‑1 (MQ=255)
gCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTtattat < 2:4891112/93‑1 (MQ=255)
gCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTtattat > 1:3871831/1‑93 (MQ=255)
cACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTattatt < 2:2995689/93‑1 (MQ=255)
ccGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAttt < 1:4864134/92‑1 (MQ=255)
cGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAtttt < 1:314384/93‑1 (MQ=255)
cGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAtttt > 2:5662922/1‑93 (MQ=255)
gACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTAAATATTTTGTAGGGCTTATTAttttt > 2:2778869/1‑93 (MQ=255)
cccGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAttttttt > 2:4344717/1‑93 (MQ=255)
ccgccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTc < 1:4417758/93‑1 (MQ=255)
gccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCg > 2:2241319/1‑93 (MQ=255)
ccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGa < 1:5201817/93‑1 (MQ=255)
ccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGa < 1:4078478/93‑1 (MQ=255)
cgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAg > 1:3089399/1‑93 (MQ=255)
cgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAg > 1:3763181/1‑93 (MQ=255)
gTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGc < 1:4497597/93‑1 (MQ=255)
gTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGc < 1:4783045/93‑1 (MQ=255)
|
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCA > NC_000913/3255522‑3255703
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATCAAGG > NC_000913/3255522‑3255709
|
TCATAATCCCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC < SRR4302532.3015874/94‑1 (MQ=60)
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC > SRR4302532.3192584/1‑94 (MQ=60)
TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC < SRR4302532.2426793/94‑1 (MQ=60)
CCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAGC < SRR4302532.1352439/94‑1 (MQ=60)
ATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGT > SRR4302532.5812003/1‑94 (MQ=60)
ATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGT < SRR4302532.5448871/94‑1 (MQ=60)
AATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCT < SRR4302532.2730750/94‑1 (MQ=60)
CACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCA > SRR4302532.1851649/1‑94 (MQ=60)
CACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCA < SRR4302532.3439722/94‑1 (MQ=60)
CACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCA < SRR4302532.5909529/94‑1 (MQ=60)
ACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA > SRR4302532.2740802/1‑94 (MQ=60)
CCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑T < SRR4302532.3698005/94‑1 (MQ=60)
CCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑T < SRR4302532.1005396/94‑1 (MQ=60)
ACCAGCCGTTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGTTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑T < SRR4302532.6337088/94‑1 (MQ=60)
CCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TG < SRR4302532.5027256/94‑1 (MQ=60)
CGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGAC < SRR4302532.5263648/94‑1 (MQ=60)
GCGGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACG < SRR4302532.2907697/94‑1 (MQ=60)
GCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACC > SRR4302532.1848113/1‑94 (MQ=60)
CGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCC > SRR4302532.2073868/1‑94 (MQ=60)
GGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCT < SRR4302532.5581866/94‑1 (MQ=60)
GGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCT > SRR4302532.811230/1‑94 (MQ=60)
CGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCT < SRR4302532.2027343/94‑1 (MQ=60)
GTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTT > SRR4302532.726159/1‑94 (MQ=60)
GTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTT > SRR4302532.5675859/1‑94 (MQ=60)
GTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTA > SRR4302532.5823655/1‑94 (MQ=60)
AGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTC > SRR4302532.6227934/1‑94 (MQ=60)
AGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTC > SRR4302532.3564698/1‑94 (MQ=60)
GTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCG < SRR4302532.1932371/94‑1 (MQ=60)
TACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGA > SRR4302532.5540876/1‑94 (MQ=60)
TACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGA > SRR4302532.6159751/1‑94 (MQ=60)
CTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATG > SRR4302532.1100518/1‑94 (MQ=60)
TGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGC < SRR4302532.3389053/94‑1 (MQ=60)
TGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGC > SRR4302532.4965364/1‑94 (MQ=60)
GTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCA < SRR4302532.5982422/94‑1 (MQ=60)
TCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAA < SRR4302532.3107835/94‑1 (MQ=60)
CGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAAT < SRR4302532.6289274/94‑1 (MQ=60)
GAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATT < SRR4302532.5774137/94‑1 (MQ=60)
AATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTT < SRR4302532.2260307/94‑1 (MQ=60)
AATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTT < SRR4302532.1530282/94‑1 (MQ=60)
ATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTC > SRR4302532.4688383/1‑94 (MQ=60)
ATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTC < SRR4302532.3113523/94‑1 (MQ=60)
TTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCC < SRR4302532.3766763/94‑1 (MQ=60)
TTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCA > SRR4302532.145296/1‑94 (MQ=60)
TTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCA > SRR4302532.3440067/1‑94 (MQ=60)
TGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCAT > SRR4302532.5788120/1‑94 (MQ=60)
GATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATA < SRR4302532.4474155/94‑1 (MQ=60)
GATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATA < SRR4302532.1756356/94‑1 (MQ=60)
gtctCTTCTCGCCACTCGCACTCACACATTCCA‑GCACGTCCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAA < SRR4302532.1142302/90‑1 (MQ=60)
ATCGCTCCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAA < SRR4302532.2445498/94‑1 (MQ=60)
TCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT > SRR4302532.4278690/1‑94 (MQ=60)
TCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT > SRR4302532.1774100/1‑94 (MQ=60)
TCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT < SRR4302532.3045986/94‑1 (MQ=60)
TCGCTGCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAAT < SRR4302532.247945/94‑1 (MQ=60)
CGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATT > SRR4302532.3222488/1‑94 (MQ=60)
CGCTTCTCGCCACTCGCTCTCACTCAGTCCA‑GCACGACCCGCCGGGGTCGAAGGAG‑CTGCAAGTAGTG‑‑‑‑CTTTATTCGATGCAATTTACATAATT > SRR4302532.3690214/1‑94 (MQ=37)
CCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTT < SRR4302532.714559/94‑1 (MQ=60)
CTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCTAA‑GCGTCTGCAA‑‑‑‑TGACGTCTTTATTCGATGCAATTTCCATAATTTC > SRR4302532.1269173/1‑94 (MQ=60)
CTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTC < SRR4302532.3470789/94‑1 (MQ=60)
CTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTC > SRR4302532.1269172/1‑94 (MQ=60)
TTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCT < SRR4302532.2276247/94‑1 (MQ=60)
TCTCGCCAGCCGCTCGCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTC < SRR4302532.4810277/94‑1 (MQ=60)
CTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCG < SRR4302532.809449/94‑1 (MQ=60)
CGCCGCTCGCTCTCACTCATTCCA‑GCACGACCCCCCGGGTTCGAA‑GCGTCTGCAA‑‑‑‑TAACGCCTCTATTCGATGCAATTTCCATAATTTCTCACT < SRR4302532.3100289/94‑1 (MQ=58)
CGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCT < SRR4302532.5995957/94‑1 (MQ=60)
ACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAAT < SRR4302532.1168952/94‑1 (MQ=60)
CTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATA < SRR4302532.1007149/94‑1 (MQ=60)
CTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATA < SRR4302532.2849278/94‑1 (MQ=60)
CTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATA < SRR4302532.3434870/94‑1 (MQ=60)
TCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAT < SRR4302532.3125345/94‑1 (MQ=60)
TCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCGCGCTCAATAG > SRR4302532.5643001/1‑94 (MQ=60)
CGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATT > SRR4302532.3930083/1‑94 (MQ=60)
GCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTT > SRR4302532.1357825/1‑94 (MQ=60)
CTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTT < SRR4302532.5972340/94‑1 (MQ=60)
CTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTT < SRR4302532.4975681/94‑1 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.1077303/94‑1 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG > SRR4302532.4702934/1‑94 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.3667103/94‑1 (MQ=60)
TCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.1227999/94‑1 (MQ=60)
CCTCACTCATTCCA‑GCACGACCCGCCGGGTTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTG < SRR4302532.1452880/94‑1 (MQ=60)
CTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGT > SRR4302532.550186/1‑94 (MQ=60)
TCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTA < SRR4302532.4216824/94‑1 (MQ=60)
ctacacgacgctcttccgatcttcgggattcgaaGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGT < SRR4302532.4986641/60‑1 (MQ=60)
CACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAG > SRR4302532.4822903/1‑94 (MQ=60)
CACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAG < SRR4302532.901109/94‑1 (MQ=60)
TCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGC > SRR4302532.4506929/1‑94 (MQ=60)
TCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGC > SRR4302532.5759091/1‑94 (MQ=60)
ATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTT > SRR4302532.2178403/1‑94 (MQ=60)
TTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTA < SRR4302532.1767858/94‑1 (MQ=60)
CCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATT < SRR4302532.3910091/94‑1 (MQ=60)
CCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATT > SRR4302532.5767659/1‑94 (MQ=60)
caGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTA < SRR4302532.498469/92‑1 (MQ=60)
AGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT < SRR4302532.3019487/94‑1 (MQ=60)
AGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT < SRR4302532.275208/94‑1 (MQ=60)
AGCACGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTAT > SRR4302532.4002486/1‑94 (MQ=60)
CCGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTT < SRR4302532.5031443/94‑1 (MQ=60)
CGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTT < SRR4302532.325298/94‑1 (MQ=60)
CGACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTT < SRR4302532.2738577/94‑1 (MQ=60)
ACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTT < SRR4302532.4022310/94‑1 (MQ=60)
ACCCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTT < SRR4302532.4575803/94‑1 (MQ=60)
CCGCCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCC < SRR4302532.4568250/94‑1 (MQ=60)
CCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAG < SRR4302532.4215431/94‑1 (MQ=60)
CCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAG > SRR4302532.3889814/1‑94 (MQ=60)
CCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAG > SRR4302532.3191748/1‑94 (MQ=60)
CCGGGGTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAG < SRR4302532.5381182/94‑1 (MQ=60)
GTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCA < SRR4302532.4651136/94‑1 (MQ=60)
GTCGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCA < SRR4302532.4947764/94‑1 (MQ=60)
CGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATC < SRR4302532.1077150/94‑1 (MQ=60)
CGAA‑GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATC > SRR4302532.5269608/1‑94 (MQ=60)
AAGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATCAA > SRR4302532.321555/1‑94 (MQ=60)
AAGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATCAA > SRR4302532.4244477/1‑94 (MQ=60)
AGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATCAAG < SRR4302532.4353956/94‑1 (MQ=60)
GCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATCAAGG > SRR4302532.3831235/1‑94 (MQ=60)
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TCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAA‑‑‑‑TGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTATTATTTTTTTCCGAGCCGCATCAAGG > NC_000913/3255522‑3255709
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
