Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,554,118 |
+C |
coding (367/396 nt) |
yhgKJ ← |
RNA phosphage cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,554,117 | 1 | . | C | 99.1%
| 776.8
/ ‑1.2
| 220 | coding (368/396 nt) | yhgKJ | RNA phosphage cyclase |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (104/114); total (105/115) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
Only 100 of 237 total aligned reads displayed.
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c < 2:5106125/93‑1 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAACTCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc < 1:6116065/93‑2 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc > 1:5745745/1‑92 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc < 1:3271546/93‑2 (MQ=255)
gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccg > 2:5960364/1‑91 (MQ=255)
gCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCa < 2:368950/93‑1 (MQ=255)
gCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCa > 1:3595083/1‑93 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc < 2:552618/93‑1 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc < 2:140838/93‑1 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt < 1:3614906/93‑1 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt < 2:2803082/93‑1 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCAGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt > 1:4649155/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGGGCCGACGGGTTATCGGT‑GCCGCCGCTCACtt > 2:2456030/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCTGCCGCTCACtt > 1:2262459/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACtt < 2:1704437/93‑1 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGACGACGGGTTGTCGGT‑GCCGCCGCTCACtt > 1:2146772/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGTGGCGC‑CGCTCACTTCa > 2:72051/1‑93 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCaa > 1:4330893/1‑93 (MQ=255)
aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAac < 2:2518328/93‑1 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 1:4044213/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 1:5152306/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca < 1:5792925/93‑1 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 1:1093900/1‑93 (MQ=255)
tCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcg > 1:2621689/1‑93 (MQ=255)
ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc > 1:1369888/1‑93 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa > 2:2341466/1‑93 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa < 2:2846502/93‑1 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa < 2:908857/93‑1 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa > 1:3229691/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg < 1:2528060/93‑1 (MQ=255)
tttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAgg < 1:3819659/93‑1 (MQ=255)
tttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCCAAgg > 2:4206211/1‑93 (MQ=255)
ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGt < 1:203210/93‑1 (MQ=255)
ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGt < 2:3843900/93‑1 (MQ=255)
tCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTc > 1:2823921/1‑93 (MQ=255)
tCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGAGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAAAACGCGAAGGTc > 2:1128360/1‑93 (MQ=255)
gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa > 1:4117577/1‑93 (MQ=255)
gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa > 1:5446225/1‑93 (MQ=255)
gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa < 1:4616587/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt < 1:5036629/93‑1 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg > 2:1935657/1‑93 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg < 2:398096/93‑1 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg > 1:975540/1‑93 (MQ=255)
gcagcGGCTCCAGCACCCGGCGGATAAAACCC‑GCAGGCGGCGGCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg < 2:4904803/93‑1 (MQ=255)
cagcGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGc > 2:2525851/1‑93 (MQ=255)
cagcGGCCCCAGCCCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGc < 1:1214809/93‑1 (MQ=255)
ggcgCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACGTCAACACGCGAAGGTCCATCGGCaa < 2:4243033/90‑1 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGCAGGTCCATCGGCAAAcc > 1:3325581/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCCAAcc > 2:2364643/1‑93 (MQ=255)
cTCCAGCACCCGGCGGATAAAATCT‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACca > 1:3767623/1‑93 (MQ=255)
cTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACca < 1:4729534/93‑1 (MQ=255)
tCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac < 1:5925167/93‑1 (MQ=255)
ccAGCCCCCGGCGGAGAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca < 2:619616/93‑1 (MQ=255)
ccAGCACCCGGCGGATAAAATCCTC‑AGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca < 1:1774345/93‑1 (MQ=255)
ccAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca < 2:3942790/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGCCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 1:5668838/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 2:5788909/93‑1 (MQ=255)
agaccccGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc < 1:367236/89‑1 (MQ=255)
aGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc > 2:5374872/1‑93 (MQ=255)
cACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcgc < 2:1081765/93‑1 (MQ=255)
ccccGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg < 2:3572140/92‑1 (MQ=255)
aCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg < 1:6129880/93‑1 (MQ=255)
ccGGCGGATAAAATCC‑GCAGTCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg < 1:2060123/93‑1 (MQ=255)
ccGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg > 2:1023053/1‑93 (MQ=255)
cggcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc < 2:5291463/93‑1 (MQ=255)
cggcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc < 2:4634965/93‑1 (MQ=255)
ggcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca < 1:5822580/93‑1 (MQ=255)
gcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag > 1:5541446/1‑93 (MQ=255)
cggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagc > 1:5646944/1‑93 (MQ=255)
caaTAAAATCC‑GCAGGCGGCGCCGAAGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca < 1:5201813/91‑1 (MQ=255)
gATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 2:2149066/1‑93 (MQ=255)
gATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc < 2:839045/93‑1 (MQ=255)
gATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 1:180724/1‑93 (MQ=255)
gATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 1:5382920/1‑93 (MQ=255)
aaaTCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt > 1:2376141/1‑93 (MQ=255)
aaaTCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 2:3132004/93‑1 (MQ=255)
ccgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgca < 2:5683959/89‑1 (MQ=255)
gcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagc > 1:4540780/3‑93 (MQ=255)
gcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagc < 1:3128080/91‑1 (MQ=255)
aGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc < 2:422001/93‑1 (MQ=255)
aGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc > 1:4209814/1‑93 (MQ=255)
aGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc > 1:2737028/1‑93 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc < 1:289894/93‑1 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc < 1:796386/93‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 1:2462803/93‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 2:461439/93‑1 (MQ=255)
cgcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGt < 1:1934202/93‑1 (MQ=255)
ccGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGGCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc > 2:3672220/1‑93 (MQ=255)
cGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa < 2:4322286/93‑1 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:4789332/1‑93 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa < 1:2694482/93‑1 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:1310621/1‑93 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc < 2:3912960/93‑1 (MQ=255)
cGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACt > 2:4467410/1‑93 (MQ=255)
gggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACtt > 1:4944580/1‑93 (MQ=255)
gggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACtt > 1:2721045/1‑93 (MQ=255)
gTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 1:722257/93‑1 (MQ=255)
tATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg < 2:3010776/93‑1 (MQ=255)
tATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATAGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg < 1:519353/93‑1 (MQ=255)
aTCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGgc < 2:4191921/93‑1 (MQ=255)
|
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG > NC_000913/3554025‑3554210
|
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCG‑C > SRR4302532.1167454/1‑94 (MQ=60)
TGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCA > SRR4302532.3715307/1‑94 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAC > SRR4302532.283092/1‑94 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAC < SRR4302532.4186234/94‑1 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACT < SRR4302532.3724081/94‑1 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCAGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACT > SRR4302532.4807665/1‑94 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTT > SRR4302532.6000525/1‑94 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTT < SRR4302532.3735806/94‑1 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGACGACGGGTTGTCGGT‑GCCGCCGCTCACTT > SRR4302532.2218508/1‑94 (MQ=60)
GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTC < SRR4302532.286394/94‑1 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCA > SRR4302532.2536094/1‑94 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATAC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCA > SRR4302532.6348394/1‑94 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAA > SRR4302532.4477207/1‑94 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAA > SRR4302532.5491375/1‑94 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAAC > SRR4302532.3786782/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACA > SRR4302532.1130481/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACA > SRR4302532.5329556/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACA > SRR4302532.4180387/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAC > SRR4302532.380866/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAC < SRR4302532.5994311/94‑1 (MQ=60)
TTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACG > SRR4302532.2709467/1‑94 (MQ=60)
TTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACG > SRR4302532.4081427/1‑94 (MQ=60)
TCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGC > SRR4302532.1415778/1‑94 (MQ=60)
CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGA > SRR4302532.5236094/1‑94 (MQ=60)
CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGA > SRR4302532.1747960/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAA > SRR4302532.3381084/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAA > SRR4302532.3336897/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAA > SRR4302532.4764109/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAG > SRR4302532.5601616/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAG < SRR4302532.1306136/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAG < SRR4302532.1612057/94‑1 (MQ=60)
TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGG < SRR4302532.2612416/94‑1 (MQ=60)
TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGG < SRR4302532.3240674/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302532.3948611/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302532.2483741/94‑1 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTC > SRR4302532.2918402/1‑94 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTC < SRR4302532.577012/94‑1 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTC < SRR4302532.210134/94‑1 (MQ=60)
CGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCA > SRR4302532.4255777/1‑94 (MQ=60)
CGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCA > SRR4302532.5634994/1‑94 (MQ=60)
CGCCACCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCA < SRR4302532.2597435/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT < SRR4302532.4774000/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT < SRR4302532.225898/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302532.5808196/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302532.5209373/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACCCGAAGGTCCATC > SRR4302532.3919333/1‑94 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302532.4909568/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG > SRR4302532.1008842/1‑94 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302532.6303167/94‑1 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGG > SRR4302532.3212424/1‑94 (MQ=60)
CAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCA < SRR4302532.2126483/94‑1 (MQ=60)
CAGCGGCCCCAGCCCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCA < SRR4302532.1255469/94‑1 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAA > SRR4302532.5310616/1‑94 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGGCCATCGGCAA > SRR4302532.5981412/1‑94 (MQ=60)
GCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAA > SRR4302532.6327782/1‑94 (MQ=60)
GGCTCCAGCCCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC < SRR4302532.2718328/94‑1 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGCAGGTCCATCGGCAAACC > SRR4302532.3436480/1‑94 (MQ=60)
GCTCCAGCACCCGGCGGATAAAATCT‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCA > SRR4302532.3894418/1‑94 (MQ=60)
CTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC < SRR4302532.4890966/94‑1 (MQ=60)
CTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC < SRR4302532.5894063/94‑1 (MQ=60)
cccacCACCCGGCGGATAAAATCC‑GCAGGCGGGGCCGACGGGTTAGCGGT‑GCCGCCGCTAACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302532.329794/89‑1 (MQ=60)
TCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA > SRR4302532.2770200/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA > SRR4302532.4761851/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA > SRR4302532.2667519/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302532.3664470/94‑1 (MQ=60)
TCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302532.6130334/94‑1 (MQ=60)
TCCAGCACCCGGCGGATAAAAGCC‑GCAGGCGGCGCCGACGGATTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302532.679527/94‑1 (MQ=60)
CCAGCACCCGGCGGATAAAATCCTC‑AGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG < SRR4302532.1833771/94‑1 (MQ=60)
CCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG > SRR4302532.1866899/1‑94 (MQ=60)
CCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG > SRR4302532.5919235/1‑94 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGCCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302532.5866500/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302532.784513/94‑1 (MQ=60)
CAGCACCCGGCGAATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302532.3753405/94‑1 (MQ=60)
aggcCCCGGCGGATAAAATCG‑GCAGCCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302532.2059126/90‑1 (MQ=60)
agacCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302532.379997/90‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302532.5350210/94‑1 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG > SRR4302532.5491309/1‑94 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG > SRR4302532.6063291/1‑94 (MQ=60)
CCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG < SRR4302532.5853777/94‑1 (MQ=60)
ACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG < SRR4302532.6341392/94‑1 (MQ=60)
CCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302532.909408/1‑94 (MQ=60)
CCGGCGGATAAAATCC‑GCAGTCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGC < SRR4302532.2128745/94‑1 (MQ=60)
GGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG < SRR4302532.4598361/94‑1 (MQ=60)
GGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG > SRR4302532.5733771/1‑94 (MQ=60)
GGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG < SRR4302532.6024780/94‑1 (MQ=60)
GGAGGAGAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGTCCCGC‑CGCTCACGGCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG < SRR4302532.3966696/94‑1 (MQ=60)
GCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGC > SRR4302532.5843361/1‑94 (MQ=60)
CGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCC > SRR4302532.4825452/1‑94 (MQ=60)
caATAAAATCC‑GCAGGCGGCGCCGAAGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC < SRR4302532.5381178/92‑1 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302532.5569367/1‑94 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC < SRR4302532.5381177/94‑1 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302532.186805/1‑94 (MQ=60)
GATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC < SRR4302532.6088966/94‑1 (MQ=60)
GATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC < SRR4302532.520318/94‑1 (MQ=60)
ATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG < SRR4302532.3390266/94‑1 (MQ=60)
AAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTT > SRR4302532.2455340/1‑94 (MQ=60)
AAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTT > SRR4302532.2361573/1‑94 (MQ=60)
AAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT < SRR4302532.1980937/94‑1 (MQ=60)
agtccgcAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG < SRR4302532.2712122/87‑1 (MQ=60)
cgcAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGC > SRR4302532.2046186/4‑94 (MQ=60)
cgcAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGC > SRR4302532.4695782/4‑94 (MQ=60)
gcAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCA < SRR4302532.3231920/92‑1 (MQ=60)
C‑AGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAC > SRR4302532.4351133/1‑94 (MQ=60)
C‑AGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAC > SRR4302532.2829016/1‑94 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA < SRR4302532.3367374/94‑1 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA < SRR4302532.299884/94‑1 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA < SRR4302532.823620/94‑1 (MQ=60)
CGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC < SRR4302532.2544741/94‑1 (MQ=60)
CGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTA < SRR4302532.1998561/94‑1 (MQ=60)
GCCGACGGGTTATCGGTGCCTC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAC < SRR4302532.2256815/94‑1 (MQ=60)
GCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCCGGCAGCACCGTTTGCAGAACCAGCGTCC > SRR4302532.2885167/1‑94 (MQ=60)
CGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302532.4785175/1‑94 (MQ=60)
GGCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC < SRR4302532.2784986/94‑1 (MQ=60)
GACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC < SRR4302532.2784982/94‑1 (MQ=60)
ACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT < SRR4302532.4426581/94‑1 (MQ=60)
ACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT > SRR4302532.4313674/1‑94 (MQ=60)
CGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT > SRR4302532.2812558/1‑94 (MQ=60)
CGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT > SRR4302532.5114291/1‑94 (MQ=60)
GGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCC < SRR4302532.5661784/94‑1 (MQ=60)
GGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCC < SRR4302532.2133651/94‑1 (MQ=60)
GTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCG < SRR4302532.2963875/94‑1 (MQ=60)
GTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCG < SRR4302532.746897/94‑1 (MQ=60)
gttatcggngncgcCGCTCACNTCNACANNCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGNANCAGCGTACAACTTCCG < SRR4302532.1013681/80‑1 (MQ=60)
TATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > SRR4302532.3036012/1‑94 (MQ=60)
TATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATAGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC < SRR4302532.537487/94‑1 (MQ=60)
ATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCG > SRR4302532.3646904/1‑94 (MQ=60)
cggtgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCT > SRR4302532.6297458/10‑94 (MQ=60)
ggtgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTA < SRR4302532.2553576/86‑1 (MQ=60)
tgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACC < SRR4302532.2324906/88‑1 (MQ=60)
tgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACC < SRR4302532.4229578/88‑1 (MQ=60)
tgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCAGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCTGCGCTACC > SRR4302532.1048544/7‑94 (MQ=60)
GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCG < SRR4302532.3890513/94‑1 (MQ=60)
cgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGAT < SRR4302532.1593440/91‑1 (MQ=60)
CC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATA < SRR4302532.5183516/94‑1 (MQ=60)
C‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG < SRR4302532.4921560/94‑1 (MQ=60)
|
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAG > NC_000913/3554025‑3554210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
