Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,870,876 |
Δ1 bp |
coding (365/1764 nt) |
dgoA ← |
2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,870,875 | 0 | G | . | 99.2%
| 1206.9
/ ‑0.3
| 262 | coding (366/1764 nt) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base . (164/96); total (166/96) |
| Fisher's exact test for biased strand distribution p-value = 5.34e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 288 total aligned reads displayed.
CAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCA > NC_000913/3870783‑3870963
|
cAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg > 2:876818/1‑93 (MQ=255)
cAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg > 1:819642/1‑93 (MQ=255)
cAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg < 1:3927047/93‑1 (MQ=255)
aaaGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgc > 1:3690983/1‑92 (MQ=255)
aaGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcg > 2:1961090/1‑91 (MQ=255)
gACTGCGATGTCCGATGGCAATACCGCTTTTAGCGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcgcc < 2:500253/93‑5 (MQ=255)
gACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcgcc > 1:728384/1‑89 (MQ=255)
aCTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGccc > 1:4870284/1‑93 (MQ=255)
cTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCg > 1:5047129/1‑93 (MQ=255)
tGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGc < 2:137028/93‑1 (MQ=255)
tGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGc > 1:3376733/1‑93 (MQ=255)
gCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCt > 2:72143/1‑93 (MQ=255)
cGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt < 2:5629546/93‑1 (MQ=255)
gATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTc > 2:1652014/1‑93 (MQ=255)
aTGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCg < 2:4926823/93‑1 (MQ=255)
tGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGa < 2:1560651/93‑1 (MQ=255)
gTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAg < 2:1253635/93‑1 (MQ=255)
tCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgc > 2:5448514/1‑93 (MQ=255)
tCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgc > 2:478851/1‑93 (MQ=255)
aTGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCgg > 2:5534208/1‑93 (MQ=255)
tGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGt > 2:4731382/1‑93 (MQ=255)
cAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTaaa < 1:603585/93‑1 (MQ=255)
aaTACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGACCGGTAAAg > 2:1389753/1‑93 (MQ=255)
aTACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAgg > 2:4867805/1‑93 (MQ=255)
aTACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTG‑GGCGCCCGCTTCGAGCGCGGTAAAgg > 1:3830279/1‑93 (MQ=255)
aTACCGCTTTTAACGCTTTGATGCATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAgg > 1:1285089/1‑93 (MQ=255)
tACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGc < 2:2558173/93‑1 (MQ=255)
ccGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCtt > 1:5161038/1‑93 (MQ=255)
cGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTc < 2:1148893/93‑1 (MQ=255)
cGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTc > 1:2611581/1‑93 (MQ=255)
gCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCg > 1:193677/1‑93 (MQ=255)
cTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGGCCGCTTCGAGCGCGGTAAAGGCTTCgg > 1:3167868/1‑93 (MQ=255)
cTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCgg > 1:3771889/1‑93 (MQ=255)
cTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCgg > 1:3618350/1‑93 (MQ=255)
tttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 2:2707555/93‑1 (MQ=255)
tttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 2:3979055/93‑1 (MQ=255)
ttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCg < 1:2498520/93‑1 (MQ=255)
tAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGc < 2:3574762/93‑1 (MQ=255)
aaCGCTTTGATGTATTGCGGACCAAAAGCCGATGAGGGAAATATTTTCAGCTCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGcc > 1:4009211/1‑93 (MQ=255)
aCGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCg > 1:1780694/1‑93 (MQ=255)
cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGt < 2:2018017/93‑1 (MQ=255)
cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGt < 1:5681825/93‑1 (MQ=255)
gCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTc < 2:5191134/93‑1 (MQ=255)
tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgc > 1:879863/1‑93 (MQ=255)
tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgc > 1:2197627/1‑93 (MQ=255)
tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgc > 2:6125822/1‑93 (MQ=255)
tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgc > 2:785222/1‑93 (MQ=255)
ttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgcg > 2:3624368/1‑93 (MQ=255)
gATGTATTGCGGACAAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCa < 1:1220349/93‑1 (MQ=255)
tGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGc > 1:1714518/1‑93 (MQ=255)
tGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGc > 2:3470436/1‑93 (MQ=255)
gTATTGCTGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGcc < 1:5327298/93‑1 (MQ=255)
gTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGcc > 1:4708055/1‑93 (MQ=255)
tATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCg < 1:5404696/93‑1 (MQ=255)
aTTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCgg < 2:2332636/93‑1 (MQ=255)
gCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGc < 2:1444156/93‑1 (MQ=255)
ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAg > 1:2035776/1‑93 (MQ=255)
ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAg > 1:2745471/1‑93 (MQ=255)
gACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAgc > 2:4481174/1‑92 (MQ=255)
cAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACgg > 1:958440/1‑93 (MQ=255)
cAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACgg > 1:3157520/1‑93 (MQ=255)
cAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACgg > 2:4218765/1‑93 (MQ=255)
aaaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGAAGAgggc > 1:4991232/1‑92 (MQ=255)
aaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTc > 1:107289/1‑93 (MQ=255)
aaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTc < 1:4242520/93‑1 (MQ=255)
aaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTc > 2:4375452/1‑93 (MQ=255)
aGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCAt < 1:6074295/93‑1 (MQ=255)
aGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCAt > 1:2474024/1‑93 (MQ=255)
gCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATg > 1:1897367/1‑93 (MQ=255)
gcGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGc < 2:3111915/92‑1 (MQ=255)
ccGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGTGCAGCCGGGGCAGACGGTCATGc > 1:4272128/1‑93 (MQ=255)
ccGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGc < 2:2883480/93‑1 (MQ=255)
ccGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGc > 1:2063268/1‑93 (MQ=255)
cGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGcc < 2:3218041/93‑1 (MQ=255)
tGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa > 1:3087116/1‑93 (MQ=255)
tGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa < 2:3767567/93‑1 (MQ=255)
tGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa < 2:106937/93‑1 (MQ=255)
gACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTGCTGCCGTaa > 2:4538272/1‑92 (MQ=255)
aCGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGc > 1:372855/1‑93 (MQ=255)
ggAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGccc > 1:447856/1‑93 (MQ=255)
ggAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGccc > 2:2079151/1‑93 (MQ=255)
gAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCa > 1:3258317/1‑93 (MQ=255)
gAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCa < 2:370852/93‑1 (MQ=255)
gAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCa < 2:5750208/93‑1 (MQ=255)
gAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCa > 1:1432197/1‑93 (MQ=255)
tatTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGc > 2:6064154/1‑93 (MQ=255)
ttttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAc > 2:470165/1‑93 (MQ=255)
tttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcg > 1:5605269/1‑93 (MQ=255)
tttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcg < 2:4049879/93‑1 (MQ=255)
tttCAGCGCCTGC‑GCCCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcg < 2:2648803/93‑1 (MQ=255)
ttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcgg > 2:2470702/1‑93 (MQ=255)
ttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcgg < 1:3020979/93‑1 (MQ=255)
tCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcggc < 2:2139472/93‑1 (MQ=255)
aGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcggcgg < 2:1775259/93‑1 (MQ=255)
aGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAcggcgg < 1:4365320/93‑1 (MQ=255)
gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGa < 2:3352178/93‑1 (MQ=255)
cgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGAt < 2:4276125/93‑1 (MQ=255)
gcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGAtc > 2:2782945/1‑93 (MQ=255)
ccTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGAtca < 2:1490852/93‑1 (MQ=255)
ccTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGAtca < 2:1723640/93‑1 (MQ=255)
|
CAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCA > NC_000913/3870783‑3870963
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCACTTCAC > NC_000913/3870783‑3870969
|
CAAAGACTGCGATGTCCGATGGCAATTCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGC < SRR4302532.5164190/94‑1 (MQ=60)
CAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGC < SRR4302532.4059356/94‑1 (MQ=60)
CAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGC > SRR4302532.3814907/1‑94 (MQ=60)
AGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCC > SRR4302532.753201/1‑94 (MQ=60)
AGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCC < SRR4302532.3823013/94‑1 (MQ=60)
GACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCC < SRR4302532.877257/94‑1 (MQ=60)
GACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCC < SRR4302532.977240/94‑1 (MQ=60)
GACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCC > SRR4302532.5037726/1‑94 (MQ=60)
ACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCG > SRR4302532.5220291/1‑94 (MQ=60)
ACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCG > SRR4302532.1532576/1‑94 (MQ=60)
ACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCG > SRR4302532.5732352/1‑94 (MQ=60)
ACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCG > SRR4302532.5830131/1‑94 (MQ=60)
CTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGC > SRR4302532.3489660/1‑94 (MQ=60)
TGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCT < SRR4302532.706875/94‑1 (MQ=60)
GCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTT < SRR4302532.53633/94‑1 (MQ=60)
CGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTG > SRR4302532.2774756/1‑94 (MQ=60)
CGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTC > SRR4302532.336966/1‑94 (MQ=60)
GATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCG < SRR4302532.341605/94‑1 (MQ=60)
ATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCTCTTCGA > SRR4302532.5660301/1‑94 (MQ=60)
TGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAG < SRR4302532.1286205/94‑1 (MQ=60)
TCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCG < SRR4302532.4430254/94‑1 (MQ=60)
CCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCTCTTCGACCGC > SRR4302532.4052679/1‑94 (MQ=60)
CGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCG > SRR4302532.3913760/1‑94 (MQ=60)
GATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGG > SRR4302532.506029/1‑94 (MQ=60)
GATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGG > SRR4302532.2104424/1‑94 (MQ=60)
TGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTA < SRR4302532.1984406/94‑1 (MQ=60)
GCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAA < SRR4302532.4929875/94‑1 (MQ=60)
CAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAG < SRR4302532.183749/94‑1 (MQ=60)
CAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAG < SRR4302532.624675/94‑1 (MQ=60)
CAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAG < SRR4302532.3187172/94‑1 (MQ=60)
CAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAG > SRR4302532.2055485/1‑94 (MQ=60)
AATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGTTAAAGG < SRR4302532.137441/94‑1 (MQ=60)
AATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTG‑GGCGCCCGCTTCGAGCGCGGTAAAGG > SRR4302532.3959586/1‑94 (MQ=60)
AATACCGCTTTTAACGCTTTGATGCATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGG > SRR4302532.1328070/1‑94 (MQ=60)
ATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCTCGGTAAAGGT > SRR4302532.5357251/1‑94 (MQ=60)
ATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGC > SRR4302532.4073717/1‑94 (MQ=60)
TACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCT > SRR4302532.2665433/1‑94 (MQ=60)
ACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTT > SRR4302532.5338657/1‑94 (MQ=60)
CCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTC > SRR4302532.4185324/1‑94 (MQ=60)
CCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTC > SRR4302532.2698947/1‑94 (MQ=60)
CGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCG > SRR4302532.200214/1‑94 (MQ=60)
CGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCG < SRR4302532.2557333/94‑1 (MQ=60)
CGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCG < SRR4302532.5218301/94‑1 (MQ=60)
GCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGGCCGCTTCGAGCGCGGTAAAGGCTTCGG > SRR4302532.3273079/1‑94 (MQ=60)
GCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGG > SRR4302532.3898875/1‑94 (MQ=60)
GCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGG > SRR4302532.3898876/1‑94 (MQ=60)
GCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGG > SRR4302532.3739433/1‑94 (MQ=60)
CTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGT > SRR4302532.3919680/1‑94 (MQ=60)
CTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGT > SRR4302532.3664945/1‑94 (MQ=60)
TTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTC > SRR4302532.3495118/1‑94 (MQ=60)
TTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCG < SRR4302532.3772079/94‑1 (MQ=60)
TTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGC > SRR4302532.327417/1‑94 (MQ=60)
TTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGC > SRR4302532.327416/1‑94 (MQ=60)
TTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGC > SRR4302532.2981945/1‑94 (MQ=60)
TTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGC < SRR4302532.2581832/94‑1 (MQ=60)
TAACGCTTTGATGTATTGCGGACCAAAAGCCGATGAGGGAAATATTTTCAGCTCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCC > SRR4302532.4144292/1‑94 (MQ=60)
AACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCG > SRR4302532.1354340/1‑94 (MQ=60)
AACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCG > SRR4302532.1840265/1‑94 (MQ=60)
CGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTC < SRR4302532.5288391/94‑1 (MQ=60)
CGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTC > SRR4302532.1026754/1‑94 (MQ=60)
CGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTC < SRR4302532.5880185/94‑1 (MQ=60)
CGCTTTGATGTATTACGGAGCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCTCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTC < SRR4302532.2341961/94‑1 (MQ=60)
GCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCG < SRR4302532.4980003/94‑1 (MQ=60)
GCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCG > SRR4302532.3388204/1‑94 (MQ=60)
CTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGC > SRR4302532.2270805/1‑94 (MQ=60)
CTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGC > SRR4302532.909948/1‑94 (MQ=60)
CTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGC > SRR4302532.272543/1‑94 (MQ=60)
CTTTGATGTATTGCGGACCAAAAGCCGAGGACGGAAATATTTTCAGCGCCTGC‑GCGTCCGCTTCGAGCGCGGTAAAGGCTTAGTTCGCCGGCGC > SRR4302532.2045013/1‑94 (MQ=60)
TTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCG > SRR4302532.5233752/1‑94 (MQ=60)
TGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCA > SRR4302532.2604474/1‑94 (MQ=60)
TGAGGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCC > SRR4302532.4484079/1‑94 (MQ=60)
GATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAG < SRR4302532.4132690/94‑1 (MQ=60)
GATGTATTGCGGACAAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAG < SRR4302532.1261185/94‑1 (MQ=60)
ATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGC > SRR4302532.793180/1‑94 (MQ=60)
ATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGC > SRR4302532.1772311/1‑94 (MQ=60)
ATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGC > SRR4302532.3159734/1‑94 (MQ=60)
TGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCC < SRR4302532.4407940/94‑1 (MQ=60)
TGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCC > SRR4302532.4534293/1‑94 (MQ=60)
TGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCC > SRR4302532.4868696/1‑94 (MQ=60)
GTATTGCTGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCG < SRR4302532.5511964/94‑1 (MQ=60)
GTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCG > SRR4302532.686300/1‑94 (MQ=60)
GTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCG < SRR4302532.969706/94‑1 (MQ=60)
TATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGG < SRR4302532.5591953/94‑1 (MQ=60)
TATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGG > SRR4302532.3070086/1‑94 (MQ=60)
TATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGG > SRR4302532.3782418/1‑94 (MQ=60)
ATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGG < SRR4302532.5575295/94‑1 (MQ=60)
TGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGC > SRR4302532.5872991/1‑94 (MQ=60)
GCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCA < SRR4302532.4400602/94‑1 (MQ=60)
CGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAG > SRR4302532.2103589/1‑94 (MQ=60)
CGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAG > SRR4302532.2837687/1‑94 (MQ=60)
GACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGAC < SRR4302532.2309031/94‑1 (MQ=60)
GACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGAC < SRR4302532.4723659/94‑1 (MQ=60)
CCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGG > SRR4302532.991159/1‑94 (MQ=60)
CCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGG > SRR4302532.1892904/1‑94 (MQ=60)
CCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGG > SRR4302532.3262333/1‑94 (MQ=60)
CAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGaagagggc > SRR4302532.5162312/1‑86 (MQ=60)
AAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTC > SRR4302532.764381/1‑94 (MQ=60)
AAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTC > SRR4302532.110988/1‑94 (MQ=60)
AAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTC > SRR4302532.1729776/1‑94 (MQ=60)
AAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTC < SRR4302532.3306402/94‑1 (MQ=60)
AAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCA < SRR4302532.4385054/94‑1 (MQ=60)
AAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCAT > SRR4302532.2556414/1‑94 (MQ=60)
AGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATG > SRR4302532.1960274/1‑94 (MQ=60)
AGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATG < SRR4302532.6284068/94‑1 (MQ=60)
GCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGTGCAGCCGGGGCAGACGGTCATGC > SRR4302532.4415974/1‑94 (MQ=60)
GCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGC > SRR4302532.2132007/1‑94 (MQ=60)
GCCGATGACGGAAATATTTTAAGCGCCTGC‑GCGCCCGCCTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCACGCATCCGCGACAGACGGTCATGC > SRR4302532.2159139/1‑94 (MQ=60)
CCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCC > SRR4302532.994650/1‑94 (MQ=60)
CCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCC < SRR4302532.4731694/94‑1 (MQ=60)
CGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCG > SRR4302532.6177324/1‑94 (MQ=60)
ATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTA > SRR4302532.3189314/1‑94 (MQ=60)
TGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAG > SRR4302532.1827988/1‑94 (MQ=60)
GACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGC > SRR4302532.385802/1‑94 (MQ=60)
CGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCC > SRR4302532.463406/1‑94 (MQ=60)
GGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCC > SRR4302532.4566372/1‑94 (MQ=60)
GGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCA > SRR4302532.1480408/1‑94 (MQ=60)
GGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCA > SRR4302532.3366603/1‑94 (MQ=60)
GGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCA < SRR4302532.2209678/94‑1 (MQ=60)
GAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCAC > SRR4302532.1884886/1‑94 (MQ=60)
AATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCG > SRR4302532.209321/1‑94 (MQ=60)
TATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCC > SRR4302532.3844778/1‑94 (MQ=60)
agtctctGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCAGGGCAGACGCTCATGCCGTAGCCCACCGCAC < SRR4302532.861744/87‑1 (MQ=60)
ATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCAC > SRR4302532.3880402/1‑94 (MQ=60)
TTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACG > SRR4302532.5799827/1‑94 (MQ=60)
TTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGC < SRR4302532.3120638/94‑1 (MQ=60)
TCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCG > SRR4302532.1205794/1‑94 (MQ=60)
TCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCG < SRR4302532.5942222/94‑1 (MQ=60)
CAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGG < SRR4302532.3219955/94‑1 (MQ=60)
CAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGG > SRR4302532.5557916/1‑94 (MQ=60)
AGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGA < SRR4302532.1961704/94‑1 (MQ=60)
AGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGA < SRR4302532.4513377/94‑1 (MQ=60)
GCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGAT > SRR4302532.1272608/1‑94 (MQ=60)
CGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATC > SRR4302532.855364/1‑94 (MQ=60)
cgccggcGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATC < SRR4302532.5770309/87‑1 (MQ=60)
gcctacGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCA > SRR4302532.1188156/7‑94 (MQ=60)
CCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCAC > SRR4302532.3247765/1‑94 (MQ=60)
CTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCACT > SRR4302532.4686753/1‑94 (MQ=60)
CGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCACTTCA < SRR4302532.1091769/94‑1 (MQ=60)
GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCACTTCAC > SRR4302532.376452/1‑94 (MQ=60)
|
CAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACCGCACGGCGGATCACTTCAC > NC_000913/3870783‑3870969
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
