Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 521 | 238.2 | 12299412 | 96.0% | 11807435 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,927,062 | +G | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,927,062 | 1 | . | G | 99.1% | 787.6 / ‑1.3 | 222 | coding (2/1284 nt) coding (169/183 nt) | yieM b4564 | hypothetical protein hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (100/120); total (100/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 | |||||||||||
Only 100 of 252 total aligned reads displayed.
ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > NC_000913/3926970‑3927148 | aCTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑a > 1:3728565/1‑93 (MQ=255)aCTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑a > 1:414481/1‑93 (MQ=255)aCTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑a < 2:144042/93‑1 (MQ=255)aCTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑a < 2:3974229/93‑1 (MQ=255) tgtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agc > 2:739687/1‑91 (MQ=255) tgtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agc < 1:3247750/93‑3 (MQ=255) tgtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agc < 1:1454769/93‑3 (MQ=255) tgtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agc < 1:1403796/93‑3 (MQ=255) tgtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agc > 1:1391799/1‑91 (MQ=255) gtgGCGTGGAGAGGTGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agcg > 1:4027102/1‑90 (MQ=255) gtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑agcg > 1:399477/1‑90 (MQ=255) ggTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTc < 1:5284343/92‑1 (MQ=255) cGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTc > 2:1521527/1‑93 (MQ=255) gTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCa < 2:5318438/93‑1 (MQ=255) gTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCa > 2:5441249/1‑93 (MQ=255) gTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCa < 1:3378611/93‑1 (MQ=255) tGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAc > 2:3751788/1‑93 (MQ=255) tGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAc > 2:203768/1‑93 (MQ=255) tGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAc > 1:5164383/1‑93 (MQ=255) gagaGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGc > 1:2740446/1‑93 (MQ=255) gaggagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCa < 2:1324219/93‑1 (MQ=255) gagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCg < 1:5002912/93‑1 (MQ=255) agCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCgg < 2:4480676/93‑1 (MQ=255) agCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCgg < 1:3564492/93‑1 (MQ=255) gCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCggg < 1:2108027/93‑1 (MQ=255) cTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCGAGCgggg > 2:3115570/1‑93 (MQ=255) cTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCgggg < 2:3141987/93‑1 (MQ=255) tGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGa > 2:5554585/1‑93 (MQ=255) tGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGa > 2:3203769/1‑93 (MQ=255) gCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAc < 1:232479/93‑1 (MQ=255) gtttGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAca < 2:4275938/92‑1 (MQ=255) cTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAca > 2:2792158/1‑93 (MQ=255) cTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAca < 2:4868975/93‑1 (MQ=255) ttGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAcatc > 2:3784023/1‑93 (MQ=255) tGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAcatca < 2:182772/93‑1 (MQ=255) cTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACatcatc < 1:4183529/93‑1 (MQ=255) taaTAGCAACTCCCCTCTTCGGTGCGTTCCGGCGGGCCTCAGGCATCATAAAGCCGACTGCGC‑AGCGATTCACGCCAGCGGGGAACAtcatca < 1:5453631/91‑1 (MQ=255) tGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACAtcatca > 2:2852906/1‑93 (MQ=255) tGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACAtcatca < 1:4867566/93‑1 (MQ=255) tAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTg > 1:6120149/1‑93 (MQ=255) aGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGa < 2:599440/93‑1 (MQ=255) gCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGAt < 1:5219361/93‑1 (MQ=255) caTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgc > 2:1140869/1‑93 (MQ=255) caTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgc > 2:5921614/1‑93 (MQ=255) caTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACCGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgc > 2:650688/1‑93 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc < 2:5505301/93‑1 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc < 2:181253/93‑1 (MQ=255) tCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgccg > 2:5168975/1‑93 (MQ=255) ccTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCt > 2:5208015/1‑93 (MQ=255) ctctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCtt < 2:2426199/93‑1 (MQ=255) tctACGGTGAGTTCCGGCGTGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTc < 1:5960441/93‑1 (MQ=255) ctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCa > 1:1743877/1‑93 (MQ=255) ctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCa < 1:1689101/93‑1 (MQ=255) ctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCa < 1:1114653/93‑1 (MQ=255) ttCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAg < 2:5290602/93‑1 (MQ=255) ggTGAGTTCCGGCGGGTCTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCg < 1:920614/93‑1 (MQ=255) gTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCgg > 2:5339003/1‑92 (MQ=255) gTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGt < 2:167269/93‑1 (MQ=255) gAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTgg < 2:4353384/93‑1 (MQ=255) gTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGa > 1:5837835/1‑93 (MQ=255) ttCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGaa > 1:2213397/1‑93 (MQ=255) ttCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGaa < 1:14446/93‑1 (MQ=255) ttCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGaa > 1:5714959/1‑93 (MQ=255) gcggGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAttttt > 1:2382293/1‑93 (MQ=255) cggGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTc > 1:3178983/1‑93 (MQ=255) cggGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTc < 2:572161/93‑1 (MQ=255) gggACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCa > 1:3807726/1‑93 (MQ=255) ggACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCaa < 2:2168107/93‑1 (MQ=255) gACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCaaa > 2:4959879/1‑93 (MQ=255) tCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCGGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaa > 1:5526039/1‑93 (MQ=255) tCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaa < 2:5408193/93‑1 (MQ=255) cGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaag < 2:3924582/93‑1 (MQ=255) gggCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAagaaga < 2:3561102/93‑1 (MQ=255) gggCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAagaaga < 2:5665573/93‑1 (MQ=255) gggCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAagaaga < 2:264723/93‑1 (MQ=255) ggCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAc > 1:3445437/1‑93 (MQ=255) ggCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAc < 1:689877/93‑1 (MQ=255) gCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAcc < 1:2806956/93‑1 (MQ=255) gCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAcc < 2:4257858/93‑1 (MQ=255) cATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCg < 1:3275067/93‑1 (MQ=255) aTCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGc > 1:1064324/1‑93 (MQ=255) aTCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGc < 2:3337935/93‑1 (MQ=255) aTCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGc > 2:4797031/1‑93 (MQ=255) tCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGcc > 1:2715090/1‑93 (MQ=255) cTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCa < 2:204772/93‑1 (MQ=255) tttCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAg < 2:4011012/93‑1 (MQ=255) aGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGc > 2:3421260/1‑93 (MQ=255) gCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCg > 1:4768838/1‑93 (MQ=255) gCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCg > 1:5636426/1‑93 (MQ=255) cGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCggg > 1:4358156/1‑92 (MQ=255) cGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGt < 2:5603616/93‑1 (MQ=255) gACTGCGCGG‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTg < 1:5474097/93‑1 (MQ=255) aCTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGa < 2:2137323/93‑1 (MQ=255) aCTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGa < 1:2470524/93‑1 (MQ=255) aCTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGa > 1:1884926/1‑93 (MQ=255) cTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAg > 1:2422094/1‑93 (MQ=255) cTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAg < 1:199863/93‑1 (MQ=255) cTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAg < 1:4622141/93‑1 (MQ=255) tGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAgg > 2:4703661/1‑93 (MQ=255) tGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAgc > 2:679938/1‑92 (MQ=255) | ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > NC_000913/3926970‑3927148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG > NC_000913/3926969‑3927155 | AGCTGTGGCGTGTAGACGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A < SRR4302532.6314757/94‑1 (MQ=60)AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A > SRR4302532.428904/1‑94 (MQ=60)AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A > SRR4302532.3853816/1‑94 (MQ=60)AACTGTGGCGTGGAGAGGAGCTGGCTTTGATGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A < SRR4302532.3175013/94‑1 (MQ=60) ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTTAGCCGACTGCGC‑A‑G < SRR4302532.4874938/94‑1 (MQ=60) ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A‑G < SRR4302532.4241210/94‑1 (MQ=60) CTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agc > SRR4302532.2337991/1‑92 (MQ=60) CTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agc < SRR4302532.634637/94‑3 (MQ=60) CTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agc < SRR4302532.4919594/94‑3 (MQ=60) CTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agc > SRR4302532.1438461/1‑92 (MQ=60) CTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agc > SRR4302532.3357449/1‑92 (MQ=60) CTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑‑‑CGC > SRR4302532.2112922/1‑94 (MQ=60) TGTGGCGTGGAGAGGTGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agcg > SRR4302532.4162811/1‑91 (MQ=60) TGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agcg > SRR4302532.413439/1‑91 (MQ=60) TGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agcg < SRR4302532.3355576/94‑4 (MQ=60) TGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agcg < SRR4302532.1503820/94‑4 (MQ=60) TGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agcg < SRR4302532.1450810/94‑4 (MQ=60) TGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑Agcg < SRR4302532.1450809/94‑4 (MQ=60) TGGCGTGGAGAGGAGCTGTCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCT < SRR4302532.1865891/94‑1 (MQ=60) GGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTT > SRR4302532.3793741/1‑94 (MQ=60) GGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCA < SRR4302532.5466613/94‑1 (MQ=60) GTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAC > SRR4302532.5646255/1‑94 (MQ=60) GTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAC < SRR4302532.3491601/94‑1 (MQ=60) GTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAC > SRR4302532.5342161/1‑94 (MQ=60) GTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCAC > SRR4302532.2311887/1‑94 (MQ=60) TGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACG < SRR4302532.4430942/94‑1 (MQ=60) TGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACG < SRR4302532.3437632/94‑1 (MQ=60) GGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGC > SRR4302532.2832526/1‑94 (MQ=60) GAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAG > SRR4302532.2119426/1‑94 (MQ=60) AGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGC > SRR4302532.5110178/1‑94 (MQ=60) GAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGG < SRR4302532.5174397/94‑1 (MQ=60) GAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGG < SRR4302532.3686503/94‑1 (MQ=60) AGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGG < SRR4302532.3683752/94‑1 (MQ=60) GCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGG < SRR4302532.2178386/94‑1 (MQ=60) CTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGA < SRR4302532.1493075/94‑1 (MQ=60) TGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAA < SRR4302532.1657289/94‑1 (MQ=60) TGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAA < SRR4302532.3072663/94‑1 (MQ=60) GGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAC > SRR4302532.2836975/1‑94 (MQ=60) GGCTTTGCTGATAGCACATCACCACTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAAC > SRR4302532.4127742/1‑94 (MQ=60) GCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACA < SRR4302532.240421/94‑1 (MQ=60) CTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACAT > SRR4302532.3594859/1‑94 (MQ=60) TTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGCACATCA > SRR4302532.6172023/1‑94 (MQ=60) TTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCA < SRR4302532.3531512/94‑1 (MQ=60) TTGCTGATAGCACATCACCGCTTCGGTGAGTGCCGGCGGGACTCGGGCATCTTTCAGCCGCCTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCA < SRR4302532.4394679/94‑1 (MQ=60) GCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATC < SRR4302532.641054/94‑1 (MQ=60) GCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATC < SRR4302532.3394795/94‑1 (MQ=60) CTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCA < SRR4302532.4323863/94‑1 (MQ=60) CTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCA > SRR4302532.2030671/1‑94 (MQ=60) CTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCA < SRR4302532.3577528/94‑1 (MQ=60) taatagcaactccCCTCTTCGGTGCGTTCCGGCGGGCCTCAGGCATCATAAAGCCGACTGCGC‑AGCGATTCACGCCAGCGGGGAACATCATCAG < SRR4302532.5642668/81‑1 (MQ=34) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAG < SRR4302532.5525799/94‑1 (MQ=60) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAG < SRR4302532.5034940/94‑1 (MQ=60) ATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTG > SRR4302532.6331352/1‑94 (MQ=60) GCACATCACCTCTTCGGTGAGTTCGGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATT < SRR4302532.253022/94‑1 (MQ=60) GCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATT < SRR4302532.5399364/94‑1 (MQ=60) CACTTCACCTCTTCGGTTAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGTCTGCGC‑AGCGCTTCACGCCAGCGGGTAACATCATCAGTGACTG > SRR4302532.5684496/1‑94 (MQ=60) CACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTG < SRR4302532.5350535/94‑1 (MQ=60) CACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTG > SRR4302532.138894/1‑94 (MQ=60) ACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTAC < SRR4302532.2894910/94‑1 (MQ=60) ATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCG > SRR4302532.1827473/1‑94 (MQ=60) ATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCG > SRR4302532.2629482/1‑94 (MQ=60) CTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTC > SRR4302532.5966499/1‑94 (MQ=60) CTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTC > SRR4302532.4689666/1‑94 (MQ=60) TCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCA > SRR4302532.1802544/1‑94 (MQ=60) TCTACGGTGAGTTCCGGCGTGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCA < SRR4302532.6166571/94‑1 (MQ=60) CTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAG < SRR4302532.1746148/94‑1 (MQ=60) CTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAG < SRR4302532.1151900/94‑1 (MQ=60) TCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGC > SRR4302532.1148127/1‑94 (MQ=60) CGGTTAGTTCCGGCGGGTCTCGCGCATCTTTCAGCCGACTGCGC‑AGCTCTTCCCGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCG < SRR4302532.2948558/94‑1 (MQ=60) GGTGAGTTCCGGCGGGTCTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGT < SRR4302532.952133/94‑1 (MQ=60) GTGAGTTGCGGGGTGACTCGGGCTTCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTG < SRR4302532.2731868/94‑1 (MQ=60) GAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGG < SRR4302532.3875794/94‑1 (MQ=60) GAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACACCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGG < SRR4302532.5828095/94‑1 (MQ=60) AGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGA > SRR4302532.6040458/1‑94 (MQ=60) AGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGA > SRR4302532.1247825/1‑94 (MQ=60) GTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAA > SRR4302532.2286934/1‑94 (MQ=60) GTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAA > SRR4302532.5914086/1‑94 (MQ=60) TTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAT < SRR4302532.15039/94‑1 (MQ=60) TTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAT < SRR4302532.15035/94‑1 (MQ=60) CCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTT < SRR4302532.6056502/94‑1 (MQ=60) CCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTT > SRR4302532.2466783/1‑94 (MQ=60) GGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTT > SRR4302532.2461661/1‑94 (MQ=60) GCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTC > SRR4302532.3284547/1‑94 (MQ=60) GGGGACTCGGGCATCTTTCAGCCGACTGCGT‑AGCCCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCA < SRR4302532.1780070/94‑1 (MQ=60) CGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCA < SRR4302532.5107083/94‑1 (MQ=60) CGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCA > SRR4302532.3977506/1‑94 (MQ=60) CGGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCA > SRR4302532.3936277/1‑94 (MQ=60) GGGACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAA < SRR4302532.2272857/94‑1 (MQ=60) ACTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGA > SRR4302532.2797519/1‑94 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCGGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA > SRR4302532.5717797/1‑94 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA > SRR4302532.4308372/1‑94 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA < SRR4302532.904533/94‑1 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA < SRR4302532.2135837/94‑1 (MQ=60) CGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA < SRR4302532.2465591/94‑1 (MQ=60) CGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA > SRR4302532.437961/1‑94 (MQ=60) CGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA > SRR4302532.2830532/1‑94 (MQ=60) CGGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA < SRR4302532.981429/94‑1 (MQ=60) GGGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAC > SRR4302532.3560857/1‑94 (MQ=60) GGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACC < SRR4302532.4999061/94‑1 (MQ=60) GGCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACC < SRR4302532.713553/94‑1 (MQ=60) GCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCG < SRR4302532.2900968/94‑1 (MQ=60) GCATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCG > SRR4302532.3317892/1‑94 (MQ=60) CATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGC < SRR4302532.3383979/94‑1 (MQ=60) CATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGC > SRR4302532.1100136/1‑94 (MQ=60) CATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGC > SRR4302532.4148020/1‑94 (MQ=60) CATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGC > SRR4302532.5301766/1‑94 (MQ=60) ATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCC > SRR4302532.1451922/1‑94 (MQ=60) ATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCC > SRR4302532.2806407/1‑94 (MQ=60) ATCTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCACTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGATCGCC > SRR4302532.3847969/1‑94 (MQ=60) CTTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAG < SRR4302532.2438668/94‑1 (MQ=60) TTTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGC < SRR4302532.5386896/94‑1 (MQ=60) TTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCT < SRR4302532.3319761/94‑1 (MQ=60) TTCAGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCT < SRR4302532.5424895/94‑1 (MQ=60) AGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCG > SRR4302532.4932496/1‑94 (MQ=60) AGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCG > SRR4302532.1591942/1‑94 (MQ=60) AGCCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCG > SRR4302532.5832227/1‑94 (MQ=60) CCGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGG > SRR4302532.4505781/1‑94 (MQ=60) CGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTG > SRR4302532.6092478/1‑94 (MQ=60) CGACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTG > SRR4302532.5710255/1‑94 (MQ=60) GACTGCGCGG‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGA < SRR4302532.5663895/94‑1 (MQ=60) GACTGCGC‑AGCGCTTCACGCCAGCGGGGCACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGG > SRR4302532.4220557/1‑94 (MQ=60) GACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGA > SRR4302532.1947427/1‑94 (MQ=60) GACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGA > SRR4302532.5899923/1‑94 (MQ=60) ACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAG > SRR4302532.2502603/1‑94 (MQ=60) ACTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAG < SRR4302532.2552779/94‑1 (MQ=60) CTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG < SRR4302532.4779752/94‑1 (MQ=60) CTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG < SRR4302532.5541667/94‑1 (MQ=60) CTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG < SRR4302532.206688/94‑1 (MQ=60) CTGCGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG < SRR4302532.5858738/94‑1 (MQ=60) CGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCA < SRR4302532.4661125/94‑1 (MQ=60) CGC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCA < SRR4302532.1279995/94‑1 (MQ=60) GC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAG < SRR4302532.6120856/94‑1 (MQ=60) GC‑AGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAG < SRR4302532.888851/94‑1 (MQ=60) G‑CGCTTCACGCCAGGGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG < SRR4302532.1744813/94‑1 (MQ=60) G‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG > SRR4302532.2622290/1‑94 (MQ=60) G‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG < SRR4302532.4120680/94‑1 (MQ=60) G‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG < SRR4302532.4094624/94‑1 (MQ=60) | AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGC‑A‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG > NC_000913/3926969‑3927155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |