Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,930,568 |
+G |
intergenic (+66/‑373) |
kup → / → rbsD |
low affinity potassium transport system/RbsD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,930,567 | 1 | . | G | 100.0%
| 781.3
/ NA
| 218 | intergenic (+65/‑374) | kup/rbsD | low affinity potassium transport system/RbsD |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (103/115); total (103/115) |
Only 100 of 236 total aligned reads displayed.
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT > NC_000913/3930475‑3930654
|
gcACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑tt > 1:1921353/1‑93 (MQ=255)
cACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑g < 1:2391074/93‑1 (MQ=255)
cACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑g < 1:5010045/93‑1 (MQ=255)
aCCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑gg < 1:5221255/93‑2 (MQ=255)
ccGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggc > 2:5267887/1‑91 (MQ=255)
cGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcg > 1:146241/1‑90 (MQ=255)
gACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaa > 2:4633623/1‑93 (MQ=255)
gACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaa > 1:4410046/1‑93 (MQ=255)
cGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAAc < 2:5285830/93‑1 (MQ=255)
gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACg > 2:1589852/1‑93 (MQ=255)
gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACg < 2:4173786/93‑1 (MQ=255)
cTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGc > 1:4693487/1‑93 (MQ=255)
tCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCCCTTTCTGGGGCGTGGTGGCAAGTTATGGCTG‑GCGAGAAAGGcc > 1:1432881/1‑93 (MQ=255)
ccATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCa > 1:1832530/1‑93 (MQ=255)
ccATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCa > 1:2664892/1‑93 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa > 1:5306403/1‑93 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa > 2:1168793/1‑93 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa < 2:5507253/93‑1 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa < 2:4083002/93‑1 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa > 1:2154038/1‑93 (MQ=255)
atatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaaa < 2:1891099/93‑1 (MQ=255)
atatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaaa < 2:2413177/93‑1 (MQ=255)
atatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaaa < 1:4541310/93‑1 (MQ=255)
tatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGCGAAACGCCAAAc > 1:828192/1‑93 (MQ=255)
tatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAAc < 2:4796187/93‑1 (MQ=255)
tatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAAc < 1:5073340/93‑1 (MQ=255)
tatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAAc < 2:5542091/93‑1 (MQ=255)
aatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAAc < 1:2853595/92‑1 (MQ=255)
tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGt > 1:5398602/1‑93 (MQ=255)
tGTCCAGAGCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGt < 2:1377534/93‑1 (MQ=255)
tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTag < 1:6005462/93‑1 (MQ=255)
tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTag > 2:308994/1‑93 (MQ=255)
tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTag < 1:6110383/93‑1 (MQ=255)
tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTag > 2:5239894/1‑93 (MQ=255)
cATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTagaa > 1:5140002/1‑93 (MQ=255)
tAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTagaaga < 1:1317254/93‑1 (MQ=255)
cgtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGt < 2:166298/93‑1 (MQ=255)
tccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGCAGAAGAAGttt > 1:480405/1‑93 (MQ=255)
tccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACCCCAAACGCAGAATAAGatt > 2:1974524/1‑93 (MQ=255)
ccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGtttt < 2:3026733/93‑1 (MQ=255)
gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc > 1:344794/1‑93 (MQ=255)
gtcGGGCACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCACGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc > 1:909347/1‑93 (MQ=255)
ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCg < 2:3351804/93‑1 (MQ=255)
gTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGc < 2:4690767/93‑1 (MQ=255)
gTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGc > 1:5806338/1‑93 (MQ=255)
tcAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTg < 2:1711256/92‑1 (MQ=255)
gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCgg > 2:3513200/1‑93 (MQ=255)
gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCgg > 2:1091561/1‑93 (MQ=255)
aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGt > 2:2909505/1‑93 (MQ=255)
tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCt < 1:574953/93‑1 (MQ=255)
tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCt < 1:1668859/93‑1 (MQ=255)
gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg < 2:3210793/93‑1 (MQ=255)
gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg < 2:1937610/93‑1 (MQ=255)
gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg > 1:4379005/1‑93 (MQ=255)
aacaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg > 2:4253473/1‑93 (MQ=255)
aacaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg < 2:6100962/93‑1 (MQ=255)
acaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGa > 1:3669979/1‑93 (MQ=255)
caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa < 1:2340179/93‑1 (MQ=255)
caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa < 2:475670/93‑1 (MQ=255)
cTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa < 1:2101558/93‑1 (MQ=255)
tGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAt < 2:557035/93‑1 (MQ=255)
tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa < 1:4075423/93‑1 (MQ=255)
tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa < 2:4303450/93‑1 (MQ=255)
gCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAg > 2:4860535/1‑93 (MQ=255)
gCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAAAGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAg > 1:2868067/1‑93 (MQ=255)
cccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt < 1:3134426/93‑1 (MQ=255)
cccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt < 1:5351662/93‑1 (MQ=255)
ccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGtt < 2:2643009/93‑1 (MQ=255)
cACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTg > 2:5032974/1‑93 (MQ=255)
cACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTg > 2:3001967/1‑93 (MQ=255)
cTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGcg > 1:4028636/1‑92 (MQ=255)
tttCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg < 1:698985/93‑1 (MQ=255)
tCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGga < 2:5730882/93‑1 (MQ=255)
tCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGga < 1:1997033/93‑1 (MQ=255)
cTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgat > 2:4514766/1‑93 (MQ=255)
cTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgat < 1:4346267/93‑1 (MQ=255)
tGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGggtg > 1:1513413/1‑93 (MQ=255)
tGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatg > 2:5095721/1‑93 (MQ=255)
ggCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatga < 1:3192020/93‑1 (MQ=255)
ggCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatga < 1:5626087/93‑1 (MQ=255)
gcgcGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatgat > 2:4927416/1‑93 (MQ=255)
cgcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg < 1:2723192/93‑1 (MQ=255)
gcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATgg < 1:3504988/93‑1 (MQ=255)
gcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATgg < 2:4534521/93‑1 (MQ=255)
tggtggCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGaaa > 2:3400263/1‑93 (MQ=255)
gtggTAAGTTATGGCTG‑GCGAGACACGCCAAGCGTAGAAGAAGTTTTCCGCCGCTGCGGTCTGGAAGCATTAAGTTGCCGGATGATGGAAAcc < 1:1206807/93‑1 (MQ=255)
tggCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcct > 2:732927/1‑93 (MQ=255)
tggCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcct > 2:3814578/1‑93 (MQ=255)
gCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcctcc < 1:772950/93‑1 (MQ=255)
cAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcctcct < 2:5905471/93‑1 (MQ=255)
aGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttc > 2:4012594/1‑93 (MQ=255)
gTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttct > 2:495596/1‑93 (MQ=255)
ttATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttctt > 2:1561978/1‑93 (MQ=255)
tATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAAGCTTAAGTTGCTGCATGATGAAAACCTCCTTCttt > 2:2258367/1‑93 (MQ=255)
aTGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTa < 2:3790629/93‑1 (MQ=255)
aTGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTa > 2:2824317/1‑93 (MQ=255)
aTGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTa < 1:3003366/93‑1 (MQ=255)
tGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAt < 2:125583/93‑1 (MQ=255)
tGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAt < 2:5840282/93‑1 (MQ=255)
tGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAt > 1:4877058/1‑93 (MQ=255)
|
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT > NC_000913/3930475‑3930654
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCA > NC_000913/3930476‑3930660
|
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑G‑G < SRR4302532.2470732/94‑1 (MQ=60)
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑G‑G < SRR4302532.5181765/94‑1 (MQ=60)
ACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑Ggc < SRR4302532.5401313/94‑3 (MQ=60)
CCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑Ggcg > SRR4302532.151149/1‑91 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGA > SRR4302532.5347098/1‑94 (MQ=60)
AAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGA > SRR4302532.909343/1‑94 (MQ=60)
AGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAA > SRR4302532.4560279/1‑94 (MQ=60)
GACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAA > SRR4302532.649162/1‑94 (MQ=60)
ACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAAC < SRR4302532.189194/94‑1 (MQ=60)
cactccataggtcagtaccgtcggcCGGGTACAGATTGAACAACTGTCGCCCACTTTCGGGCGCGGTGTGGCAAGTTATGG‑TTGG‑CGAGAAACG < SRR4302532.3890841/69‑1 (MQ=60)
CGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGTCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACG > SRR4302532.2968804/1‑94 (MQ=60)
CGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACG < SRR4302532.4184415/94‑1 (MQ=60)
GCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGC > SRR4302532.4853566/1‑94 (MQ=60)
GCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGC > SRR4302532.4038490/1‑94 (MQ=60)
CTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCCCTTTCTGGGGCGTGGTGGCAAGTTATGGCTG‑G‑CGAGAAAGGCC > SRR4302532.1481114/1‑94 (MQ=60)
TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCA > SRR4302532.1505802/1‑94 (MQ=60)
TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCA > SRR4302532.2754331/1‑94 (MQ=60)
TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCA > SRR4302532.1893481/1‑94 (MQ=60)
CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAA > SRR4302532.2226043/1‑94 (MQ=60)
CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAA > SRR4302532.5489869/1‑94 (MQ=60)
CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAA > SRR4302532.5866984/1‑94 (MQ=60)
CATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAA > SRR4302532.3188588/1‑94 (MQ=60)
ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGCGAAACGCCAAAC > SRR4302532.856526/1‑94 (MQ=60)
ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAAC > SRR4302532.856525/1‑94 (MQ=60)
ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAAC < SRR4302532.4696329/94‑1 (MQ=60)
ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAAC > SRR4302532.125235/1‑94 (MQ=60)
TATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACG < SRR4302532.5247729/94‑1 (MQ=60)
AATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACG < SRR4302532.2949019/94‑1 (MQ=60)
ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGT > SRR4302532.5585663/1‑94 (MQ=60)
TCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGA < SRR4302532.2345415/94‑1 (MQ=60)
TCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGA < SRR4302532.6212843/94‑1 (MQ=60)
TCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGA < SRR4302532.6321290/94‑1 (MQ=60)
CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAA > SRR4302532.5316829/1‑94 (MQ=60)
CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAA < SRR4302532.6320101/94‑1 (MQ=60)
CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAA > SRR4302532.2124533/1‑94 (MQ=60)
CATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAG > SRR4302532.1971375/1‑94 (MQ=60)
CATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAG < SRR4302532.3585151/94‑1 (MQ=60)
ATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGACACGCCAAACGTAGAAGA > SRR4302532.2994546/1‑94 (MQ=60)
ATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGA > SRR4302532.549223/1‑94 (MQ=60)
TAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAA < SRR4302532.1361292/94‑1 (MQ=60)
TAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAA < SRR4302532.1539107/94‑1 (MQ=60)
CGTCCGTCTGGTACAGAGTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGTCAAGTTATGC‑TT‑GTCGACAAAAGCCAACCCTAGAAGAAGTT < SRR4302532.6273614/94‑1 (MQ=48)
CGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTT > SRR4302532.3500823/1‑94 (MQ=60)
CGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTT < SRR4302532.5581416/94‑1 (MQ=60)
GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGCAGAAGAAGTTT > SRR4302532.497160/1‑94 (MQ=60)
GTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑AGAGAAACGCCAAACGTCGAAGAAGTTT > SRR4302532.497161/1‑94 (MQ=60)
TCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTT > SRR4302532.3381526/1‑94 (MQ=60)
CCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTC < SRR4302532.5756080/94‑1 (MQ=60)
CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCC > SRR4302532.356744/1‑94 (MQ=60)
CGTCGGGCACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCACGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCC > SRR4302532.940404/1‑94 (MQ=60)
GTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCA > SRR4302532.2958790/1‑94 (MQ=60)
TCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCAC < SRR4302532.5283022/94‑1 (MQ=60)
CGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACC > SRR4302532.5967885/1‑94 (MQ=60)
CGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACC < SRR4302532.294690/94‑1 (MQ=60)
GGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGC > SRR4302532.6008084/1‑94 (MQ=60)
CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG < SRR4302532.6017389/94‑1 (MQ=60)
AGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGG < SRR4302532.2008878/94‑1 (MQ=60)
AGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGG > SRR4302532.2087231/1‑94 (MQ=60)
AGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGG < SRR4302532.5120298/94‑1 (MQ=60)
GATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGT < SRR4302532.1382/94‑1 (MQ=60)
TTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAGGAAGTTTTCCACCGCTGCGGTCT < SRR4302532.3834096/94‑1 (MQ=60)
TTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCT < SRR4302532.1485157/94‑1 (MQ=60)
TGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTG < SRR4302532.595011/94‑1 (MQ=60)
TGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTG < SRR4302532.1725334/94‑1 (MQ=60)
TGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTG > SRR4302532.4527719/1‑94 (MQ=60)
GAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGG > SRR4302532.4629166/1‑94 (MQ=60)
GAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGG > SRR4302532.1800386/1‑94 (MQ=60)
AACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGA > SRR4302532.1581332/1‑94 (MQ=60)
AACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGA > SRR4302532.3793257/1‑94 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG < SRR4302532.5218763/94‑1 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG < SRR4302532.4475738/94‑1 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG < SRR4302532.2647047/94‑1 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG > SRR4302532.611583/1‑94 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG > SRR4302532.744627/1‑94 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG < SRR4302532.2418175/94‑1 (MQ=60)
CAACTGTCGCACACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAACCGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAT < SRR4302532.2805274/94‑1 (MQ=60)
CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT < SRR4302532.5750379/94‑1 (MQ=60)
CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT < SRR4302532.2171684/94‑1 (MQ=60)
TGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATT < SRR4302532.2181385/94‑1 (MQ=60)
TCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAA < SRR4302532.4212278/94‑1 (MQ=60)
CGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAG < SRR4302532.4496180/94‑1 (MQ=60)
CGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAAAGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAG > SRR4302532.2964000/1‑94 (MQ=60)
GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT > SRR4302532.2755953/1‑94 (MQ=60)
GCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT > SRR4302532.430604/1‑94 (MQ=60)
CCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT < SRR4302532.3238466/94‑1 (MQ=60)
CCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT < SRR4302532.5537285/94‑1 (MQ=60)
CCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTG < SRR4302532.4539400/94‑1 (MQ=60)
CCACTTTCTGGCGCGGGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCCAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGGAGGATTAAGTgt > SRR4302532.1641132/1‑92 (MQ=60)
ACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCG > SRR4302532.4164387/1‑94 (MQ=60)
CTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG > SRR4302532.4610084/1‑94 (MQ=60)
TTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGG < SRR4302532.722906/94‑1 (MQ=60)
TCTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGAT < SRR4302532.2063551/94‑1 (MQ=60)
TCTGACGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGAT < SRR4302532.3292208/94‑1 (MQ=60)
CTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGGTG > SRR4302532.1564528/1‑94 (MQ=60)
CTGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATG < SRR4302532.4493142/94‑1 (MQ=60)
TGGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGA > SRR4302532.2467021/1‑94 (MQ=60)
GGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGAT < SRR4302532.5821329/94‑1 (MQ=60)
GGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGAT < SRR4302532.3298018/94‑1 (MQ=60)
GGCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGAT < SRR4302532.5446882/94‑1 (MQ=60)
GCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG < SRR4302532.5008372/94‑1 (MQ=60)
GCGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG < SRR4302532.4922831/94‑1 (MQ=60)
CGCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGG < SRR4302532.2814775/94‑1 (MQ=60)
GCGTGGTGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGA < SRR4302532.3622387/94‑1 (MQ=60)
GTGGTAAGTTATGGCTG‑G‑CGAGACACGCCAAGCGTAGAAGAAGTTTTCCGCCGCTGCGGTCTGGAAGCATTAAGTTGCCGGATGATGGAAACCT < SRR4302532.1247195/94‑1 (MQ=60)
TGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTC > SRR4302532.5514401/1‑94 (MQ=60)
TGGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTC > SRR4302532.2436711/1‑94 (MQ=60)
GGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC > SRR4302532.5283514/1‑94 (MQ=60)
GGCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC < SRR4302532.3686965/94‑1 (MQ=60)
GCAAGTTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCT < SRR4302532.799609/94‑1 (MQ=60)
TTATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTT > SRR4302532.798442/1‑94 (MQ=60)
ATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT > SRR4302532.5044740/1‑94 (MQ=60)
ATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT < SRR4302532.4798755/94‑1 (MQ=60)
ATGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT < SRR4302532.3102560/94‑1 (MQ=60)
TGG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATG > SRR4302532.5931460/1‑94 (MQ=60)
G‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTC < SRR4302532.6355919/94‑1 (MQ=60)
ttgG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCG < SRR4302532.1661807/91‑1 (MQ=60)
ttgG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCG < SRR4302532.3304661/91‑1 (MQ=60)
ttgG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCG < SRR4302532.4340369/91‑1 (MQ=60)
TG‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGC > SRR4302532.3106168/1‑94 (MQ=60)
G‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCA > SRR4302532.1046297/1‑94 (MQ=60)
|
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCA > NC_000913/3930476‑3930660
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
