Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,944,244 |
C→A |
intergenic (+13/‑80) |
rrlC → / → rrfC |
23S ribosomal RNA/5S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,944,244 | 0 | C | A | 100.0%
| 148.6
/ NA
| 62 | intergenic (+13/‑80) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (36/26); total (36/26) |
GGCTTAACCTTACAACGCCGAA‑GCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGG > NC_000913/3944221‑3944333
|
ggCTTAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAATATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg < 1:172218/93‑1 (MQ=9)
ggCTTAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg < 1:4462472/93‑1 (MQ=14)
gCTTTACCTTTCAACGCCGAAGGATGTTTGGGCGG‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatga < 2:4243863/93‑1 (MQ=11)
gCTTAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatga < 2:3300087/93‑1 (MQ=17)
ttAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa < 1:1463650/93‑1 (MQ=18)
ttAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa > 2:2429689/1‑93 (MQ=18)
ttAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa > 1:5965024/1‑93 (MQ=18)
ttAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa > 1:5965023/1‑93 (MQ=18)
ttAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa > 2:4348490/1‑93 (MQ=18)
tAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc < 2:2824378/93‑1 (MQ=18)
tAACCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc > 1:1211629/1‑93 (MQ=18)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 1:5927185/93‑1 (MQ=18)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 1:2246309/93‑1 (MQ=18)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa > 1:5772861/1‑93 (MQ=18)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa > 2:165835/1‑93 (MQ=18)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 2:5400312/93‑1 (MQ=21)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 1:1735521/93‑1 (MQ=21)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 2:1021636/93‑1 (MQ=21)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 2:4877070/93‑1 (MQ=21)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa > 2:4734977/1‑93 (MQ=18)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 1:3741222/93‑1 (MQ=21)
aaCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa > 1:4043564/1‑93 (MQ=18)
aCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg > 1:2042753/1‑93 (MQ=18)
aCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg < 2:585616/93‑1 (MQ=18)
aCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg > 1:1922652/1‑93 (MQ=18)
aCCTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg > 1:2501084/1‑93 (MQ=18)
ccTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa < 1:3873713/93‑1 (MQ=18)
ccTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa > 1:6059474/1‑93 (MQ=18)
ccTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa > 2:2761364/1‑93 (MQ=18)
ccTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa < 1:1499375/93‑1 (MQ=18)
ccTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa < 1:1499374/93‑1 (MQ=21)
cTTACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGaa < 1:3876664/93‑1 (MQ=18)
ttACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt > 1:3171825/1‑93 (MQ=18)
ttACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt > 2:5314509/1‑93 (MQ=18)
ttACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt < 1:3052328/93‑1 (MQ=21)
ttACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt > 1:4707487/1‑93 (MQ=18)
ttACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt > 2:2872609/1‑93 (MQ=18)
tACAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAtt < 2:5690735/93‑1 (MQ=21)
aCAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt > 1:3441569/1‑93 (MQ=18)
aCAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt > 1:3263200/1‑93 (MQ=18)
aCAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt < 2:2175126/93‑1 (MQ=18)
cAACGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTg < 2:5629596/93‑1 (MQ=18)
aaCGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc < 1:2730641/93‑1 (MQ=18)
aCGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGcc > 2:937616/1‑93 (MQ=18)
aCGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGcc > 1:5334679/1‑93 (MQ=18)
cGCCGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt < 1:3277752/93‑1 (MQ=18)
gcGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg < 1:2632173/92‑1 (MQ=18)
ccGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg > 2:5783874/1‑93 (MQ=18)
ccGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg < 1:2989402/93‑1 (MQ=21)
cGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc < 2:2273358/93‑1 (MQ=18)
cGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc > 2:3182931/1‑93 (MQ=18)
cGAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc > 2:4161165/1‑93 (MQ=18)
gAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg > 1:1515221/1‑93 (MQ=18)
gAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg < 1:1689957/93‑1 (MQ=18)
gAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg > 1:4331973/1‑93 (MQ=18)
gAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg > 1:4543836/1‑93 (MQ=18)
gAA‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg > 2:1812512/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 1:3644907/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 2:5020065/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 1:3059473/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 1:4264788/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 1:2135480/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 1:4850134/1‑93 (MQ=18)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg < 2:5998650/93‑1 (MQ=21)
aa‑GATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg > 2:6019172/1‑93 (MQ=18)
|
GGCTTAACCTTACAACGCCGAA‑GCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGG > NC_000913/3944221‑3944333
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
