Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,548	1 bp→GG	intergenic (‑117/‑744)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,547	1	.	G	93.5%	466.7 / 23.1	138	intergenic (‑116/‑745)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (8/1); new base G (55/74); total (63/75)
Fisher's exact test for biased strand distribution p-value = 1.15e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.46e-02
*	NC_000913	3,957,548	0	T	G	100.0%	495.5 / NA	138	intergenic (‑117/‑744)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (63/75); total (63/75)

Only 100 of 139 total aligned reads displayed.

TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957470‑3957627

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tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑c‑c                                                                     <  1:4646966/93‑1 (MQ=255)

   cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑c‑cctc                                                                  >  2:4558835/1‑90 (MQ=255)

    aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑c‑cctca                                                                 <  1:3594481/93‑5 (MQ=255)

       aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAgg                                                               <  1:826261/93‑1 (MQ=255)

       aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAgg                                                               <  1:151896/93‑1 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAggg                                                              >  2:4325677/1‑93 (MQ=255)

        tCCGCAGATGCTAACATAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAggg                                                              >  2:2895915/1‑93 (MQ=255)

         ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAgggg                                                             <  2:5923120/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGga                                                            <  2:3388717/93‑1 (MQ=255)

               aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGaaaa                                                       >  1:308986/1‑93 (MQ=255)

                tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAAc                                                      >  2:4544786/1‑93 (MQ=255)

                tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAAc                                                      >  1:2605310/1‑93 (MQ=255)

                 gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACt                                                     >  1:2938992/1‑93 (MQ=255)

                 gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CGTCGCAGGTCC‑CTCAAGGGGAGAAAACt                                                     >  2:1293094/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg                                                  <  1:1018440/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg                                                  >  1:1900277/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg                                                  <  2:1925912/93‑1 (MQ=255)

                     aCGTAATTGTCAGTCAGGGAGTCGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAgg                                                 <  1:3201179/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                               >  1:3249213/1‑93 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                               <  2:1798259/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGT‑CTCTCAAGGGGAGAAAACTTAGGGc                                               >  1:3443540/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                              <  2:5958304/93‑1 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                              >  2:1670348/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                              <  1:1056185/93‑1 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCct                                             <  2:6071234/93‑1 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc                                            <  2:4959993/93‑1 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc                                            <  2:1815027/93‑1 (MQ=255)

                            tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa                                          <  2:3506523/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  1:1129571/93‑1 (MQ=255)

                                agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      >  2:828683/1‑93 (MQ=255)

                                agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      >  2:1298989/1‑93 (MQ=255)

                                agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      >  2:1197914/1‑93 (MQ=255)

                                agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      <  1:521336/93‑1 (MQ=255)

                                agtcagGGAGTGGCTGACACATATATGGCAAAACCCCTGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      <  2:2739448/93‑1 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                    >  2:1566262/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                    >  1:4757245/1‑93 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGGGAAAACTTAGGGCCCCCATggggtcc                                  >  2:1508563/1‑89 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  >  1:4052741/1‑93 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  <  2:2358848/93‑1 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  <  1:619340/93‑1 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  >  2:1508564/1‑93 (MQ=255)

                                     gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                 >  2:1727812/1‑93 (MQ=255)

                                     gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                 >  2:4555456/1‑93 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                <  2:3183266/93‑1 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑G‑GGCC‑TCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                >  2:5165397/1‑93 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               <  2:585246/93‑1 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               <  1:5480111/93‑1 (MQ=255)

                                        aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                              <  1:4886800/93‑1 (MQ=255)

                                        aGTGGCTGGTACATATAAGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                              <  1:1996586/93‑1 (MQ=255)

                                         gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                             <  1:3299215/93‑1 (MQ=255)

                                          tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                            >  1:4814745/1‑93 (MQ=255)

                                            gCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                          <  1:2671362/93‑1 (MQ=255)

                                             cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                         <  1:907817/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        >  1:1533937/1‑93 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        >  1:4211893/1‑93 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        <  1:5584220/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTTTATGGGCTACAAAGTCATTAt                       <  1:4971884/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  1:5958066/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  2:2162068/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGAAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  1:2561476/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      >  1:255486/1‑93 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      >  2:1131429/1‑93 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      <  2:3238432/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      >  1:3562583/1‑93 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGAGCCTCTATGGGCTACAAAGTCATTATc                      >  2:235248/1‑93 (MQ=255)

                                                 tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                     <  1:4456508/93‑1 (MQ=255)

                                                 tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                     >  2:4773745/1‑93 (MQ=255)

                                                 tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                     <  2:4320497/93‑1 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   >  2:2286091/1‑93 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   >  1:5961297/1‑93 (MQ=255)

                                                    atatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                  >  1:5810927/1‑93 (MQ=255)

                                                    atatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                  >  1:3787/1‑93 (MQ=255)

                                                    atatatGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                  >  2:802404/1‑93 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 <  1:686916/93‑1 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 <  1:5811190/93‑1 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 <  1:3881312/93‑1 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 >  2:260567/1‑93 (MQ=255)

                                                      atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                <  2:3942384/93‑1 (MQ=255)

                                                      atagGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                <  2:158199/93‑1 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAACGTCATTATCGGGGATg               >  2:307469/1‑93 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg               <  2:5639335/93‑1 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             <  1:5699089/93‑1 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             <  2:651666/93‑1 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             <  1:6090494/93‑1 (MQ=255)

                                                           gCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta           <  1:870907/93‑1 (MQ=255)

                                                           gCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta           <  1:3366842/93‑1 (MQ=255)

                                                             aaaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt         >  1:2762356/1‑93 (MQ=255)

                                                              aaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt        <  2:417131/93‑1 (MQ=255)

                                                               aaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt       <  2:3318719/93‑1 (MQ=255)

                                                               aaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt       >  1:3605180/1‑93 (MQ=255)

                                                                aGCCCGGAAAATCC‑GGG‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta      >  2:5262722/1‑93 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     >  2:3086145/1‑93 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     >  2:2094205/1‑93 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     <  2:1168370/93‑1 (MQ=255)

                                                                  cccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt    >  1:469397/1‑93 (MQ=255)

                                                                  cccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt    <  1:1553052/93‑1 (MQ=255)

                                                                   ccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   >  1:560076/1‑93 (MQ=255)

                                                                   ccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   <  2:1736995/93‑1 (MQ=255)

                                                                   ccGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   <  2:3791210/93‑1 (MQ=255)

                                                                    cGGAAAATCCGG‑G‑‑CTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt  <  1:2959575/93‑1 (MQ=255)

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TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957470‑3957627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A