Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,979,535	+G	coding (1036/1386 nt)	yifK →	putative amino acid/amine transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,979,534	1	.	G	100.0%	832.9 / NA	227	I345M (ATT→ATG)	yifK	putative amino acid/amine transport protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (116/111); total (116/111)

Only 100 of 247 total aligned reads displayed.

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT  >  NC_000913/3979442‑3979622

 aaaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑g                                                                                         <  2:730306/93‑1 (MQ=255)

  aaaCGGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑gg                                                                                        >  1:4036343/1‑92 (MQ=255)

  aaaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑gg                                                                                        >  2:297336/1‑92 (MQ=255)

   aaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑ggc                                                                                       >  2:5852802/1‑91 (MQ=255)

   aaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑ggc                                                                                       <  1:733692/93‑3 (MQ=255)

   aaCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑ggc                                                                                       >  2:3423324/1‑91 (MQ=255)

    aCCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑ggct                                                                                      >  2:4104223/1‑90 (MQ=255)

       gTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCAt                                                                                    <  2:2078038/93‑1 (MQ=255)

        tCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATg                                                                                   >  2:1942382/1‑93 (MQ=255)

           gTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCt                                                                                >  1:1253825/1‑93 (MQ=255)

              aCCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTgaa                                                                             <  2:5797346/93‑3 (MQ=255)

              aCCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTgaa                                                                             <  1:6143744/93‑3 (MQ=255)

               ccGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTAATGCTATTCTGCTAATTGGCTCATGCCTgaac                                                                            <  1:3417084/93‑4 (MQ=255)

                cggcggCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTgaact                                                                           <  2:580992/93‑5 (MQ=255)

                 ggcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTa                                                                         <  2:1641854/93‑1 (MQ=255)

                 ggcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTa                                                                         <  1:945929/93‑1 (MQ=255)

                 ggcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTa                                                                         <  1:5538444/93‑1 (MQ=255)

                   cggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAca                                                                       <  2:829135/93‑1 (MQ=255)

                    ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                      <  1:5317622/93‑1 (MQ=255)

                    ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                      >  2:2748759/1‑93 (MQ=255)

                    ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                      <  1:4712717/93‑1 (MQ=255)

                    ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                      <  2:5206169/93‑1 (MQ=255)

                      cAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatca                                                                    <  1:2125922/93‑1 (MQ=255)

                         tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTc                                                                 >  1:295870/1‑93 (MQ=255)

                         tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGGGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTc                                                                 >  2:4571861/1‑93 (MQ=255)

                          ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑CAACTACATCAttac                                                                >  2:1567974/1‑91 (MQ=255)

                           gCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTccc                                                               >  2:1203899/1‑93 (MQ=255)

                           gCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTccc                                                               >  2:2501371/1‑93 (MQ=255)

                            cGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCa                                                              <  2:5176758/93‑1 (MQ=255)

                            cGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCa                                                              >  2:4769809/1‑93 (MQ=255)

                             gAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCaa                                                             >  2:1116704/1‑93 (MQ=255)

                             gAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCaa                                                             <  2:23583/93‑1 (MQ=255)

                              aaaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAAt                                                            >  1:1807341/1‑93 (MQ=255)

                               aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                                           <  1:5217507/93‑1 (MQ=255)

                               aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTCCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                                           <  2:47098/93‑1 (MQ=255)

                                   ttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                                       <  2:3939317/93‑1 (MQ=255)

                                    tCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAg                                                      >  1:300563/1‑93 (MQ=255)

                                      ccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCg                                                    >  1:3765977/1‑93 (MQ=255)

                                       cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                                                   <  2:266649/93‑1 (MQ=255)

                                       cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                                                   <  1:3469853/93‑1 (MQ=255)

                                       cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                                                   <  2:5278048/93‑1 (MQ=255)

                                       cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATACGCAGCgt                                                   >  2:3632497/1‑93 (MQ=255)

                                        gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                  >  2:3856852/1‑93 (MQ=255)

                                        gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                  >  1:3859507/1‑93 (MQ=255)

                                        gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                  >  1:519244/1‑93 (MQ=255)

                                         tCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgt                                                 <  2:2202253/93‑1 (MQ=255)

                                         tCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgt                                                 >  1:3103130/1‑93 (MQ=255)

                                         tCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgg                                                 >  1:1420073/1‑92 (MQ=255)

                                          cACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtg                                                <  2:2875737/93‑1 (MQ=255)

                                             ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGttt                                             >  2:1452120/1‑93 (MQ=255)

                                              gCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTg                                            >  2:3486929/1‑93 (MQ=255)

                                              gCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTg                                            <  2:2317074/93‑1 (MQ=255)

                                                gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                          >  1:5408170/1‑93 (MQ=255)

                                                gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                          <  1:6087631/93‑1 (MQ=255)

                                                  aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                                        >  2:5727661/1‑93 (MQ=255)

                                                   ccGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCCGCGAGTGTTTgtctac                                       >  1:2293256/1‑93 (MQ=255)

                                                    cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacg                                      <  1:3968227/93‑1 (MQ=255)

                                                      gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                    <  2:6019526/93‑1 (MQ=255)

                                                      gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                    >  2:2535390/1‑93 (MQ=255)

                                                      gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                    >  1:1920730/1‑93 (MQ=255)

                                                      gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                    <  2:5361724/93‑1 (MQ=255)

                                                          cGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACa                                <  2:4467621/93‑1 (MQ=255)

                                                           gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                               >  1:4121437/1‑93 (MQ=255)

                                                             gtgtGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg                             >  2:511782/1‑93 (MQ=255)

                                                              tttgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGc                            >  2:5457571/3‑93 (MQ=255)

                                                               gtgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGcc                           >  1:1299658/1‑93 (MQ=255)

                                                                tgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa                          <  1:286199/93‑1 (MQ=255)

                                                                tgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa                          >  2:3677184/1‑93 (MQ=255)

                                                                tgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa                          <  1:1584754/93‑1 (MQ=255)

                                                                  gCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGc                        <  1:597366/93‑1 (MQ=255)

                                                                   cAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCg                       <  1:4444935/93‑1 (MQ=255)

                                                                    aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGCGCCAGCGt                      <  1:4197954/93‑1 (MQ=255)

                                                                     gTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTg                     >  2:78118/1‑93 (MQ=255)

                                                                      tATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                    >  2:3311602/1‑93 (MQ=255)

                                                                      tATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                    <  2:4317312/93‑1 (MQ=255)

                                                                       aTCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCt                   <  1:2812112/93‑1 (MQ=255)

                                                                        tCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCtt                  <  2:6144425/93‑1 (MQ=255)

                                                                         cTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTc                 <  1:32843/93‑1 (MQ=255)

                                                                         cTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTc                 <  2:3912414/93‑1 (MQ=255)

                                                                         cTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTc                 <  2:1682310/93‑1 (MQ=255)

                                                                         cTATTGCTATGCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCATCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTc                 <  1:32839/93‑1 (MQ=255)

                                                                          tATTTCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc                <  1:1745024/93‑1 (MQ=255)

                                                                          tATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc                <  2:3032808/93‑1 (MQ=255)

                                                                           aTTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGGGCTTCCg               >  1:4017750/1‑93 (MQ=255)

                                                                            ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg              >  1:3714262/1‑93 (MQ=255)

                                                                            ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg              <  1:6024236/93‑1 (MQ=255)

                                                                            ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg              <  1:3919189/93‑1 (MQ=255)

                                                                             tGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg             <  1:1104394/93‑1 (MQ=255)

                                                                             tGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg             >  1:4982895/1‑93 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTCCGTCTACAGTGCCAGCGTGCTTCCGGGGAt          <  1:2433417/93‑1 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt          >  1:4974209/1‑93 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt          >  2:4381088/1‑93 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt          <  1:5703674/93‑1 (MQ=255)

                                                                                tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt          >  2:3191623/1‑93 (MQ=255)

                                                                                   tCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGt       >  2:5502994/1‑93 (MQ=255)

                                                                                     tGCTAATTGGCTCATGCCT‑GAACTCCATCATCGCAAATCCGCAGCGTGTGTTTGTCTGCGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGc     <  1:3559782/93‑1 (MQ=255)

                                                                                     tGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGc     <  2:4910483/93‑1 (MQ=255)

                                                                                      gCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGcc    >  1:352889/1‑93 (MQ=255)

                                                                                        tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt  >  2:5611845/1‑93 (MQ=255)

                                                                                        tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt  <  2:3844860/93‑1 (MQ=255)

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT  >  NC_000913/3979442‑3979622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGT  >  NC_000913/3979442‑3979629

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G                                                                                                 <  SRR4302532.6311711/94‑1 (MQ=60)

 AAAACGGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑G                                                                                               >  SRR4302532.4172312/1‑94 (MQ=60)

  AAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑Ggc                                                                                               <  SRR4302532.3819214/94‑3 (MQ=60)

   AACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑Ggct                                                                                              <  SRR4302532.758685/94‑4 (MQ=60)

      CGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCAT                                                                                           <  SRR4302532.2499087/94‑1 (MQ=60)

      CGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCAT                                                                                           <  SRR4302532.3418392/94‑1 (MQ=60)

      CGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCAT                                                                                           <  SRR4302532.5451307/94‑1 (MQ=60)

       GTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATG                                                                                          >  SRR4302532.75741/1‑94 (MQ=60)

       GTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATG                                                                                          >  SRR4302532.4941525/1‑94 (MQ=60)

          AGTTACCGGCGGCAATGGCGAAAGTTTCCCGTTACGGCTTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT                                                                                       <  SRR4302532.139461/94‑1 (MQ=60)

          AGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT                                                                                       >  SRR4302532.1295792/1‑94 (MQ=60)

            TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCTGA                                                                                     >  SRR4302532.1479217/1‑94 (MQ=60)

             TACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCTGAA                                                                                    >  SRR4302532.1249449/1‑94 (MQ=60)

              ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAAC                                                                                  <  SRR4302532.6268042/94‑1 (MQ=60)

              ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAAC                                                                                  <  SRR4302532.6355660/94‑1 (MQ=60)

               CCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTAATGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACT                                                                                 <  SRR4302532.3531545/94‑1 (MQ=60)

                 GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAC                                                                               <  SRR4302532.978308/94‑1 (MQ=60)

                 GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAC                                                                               <  SRR4302532.4181967/94‑1 (MQ=60)

                 GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAC                                                                               <  SRR4302532.5730664/94‑1 (MQ=60)

                   CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACAT                                                                             >  SRR4302532.1937186/1‑94 (MQ=60)

                    GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAGTTGG‑CTCATGCCT‑GAACTACATC                                                                            >  SRR4302532.3603737/1‑94 (MQ=60)

                    GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATC                                                                            <  SRR4302532.4873517/94‑1 (MQ=60)

                    GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATC                                                                            <  SRR4302532.5501633/94‑1 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAT                                                                          >  SRR4302532.4105453/1‑94 (MQ=60)

                      CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAT                                                                          <  SRR4302532.2196956/94‑1 (MQ=60)

                       AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                         >  SRR4302532.4319700/1‑94 (MQ=60)

                       AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                         <  SRR4302532.4163256/94‑1 (MQ=60)

                       AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                         >  SRR4302532.2654066/1‑94 (MQ=60)

                        ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTC                                                                        >  SRR4302532.306075/1‑94 (MQ=60)

                             GAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAAT                                                                   >  SRR4302532.1867644/1‑94 (MQ=60)

                             GAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAAT                                                                   <  SRR4302532.4274597/94‑1 (MQ=60)

                              AAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATC                                                                  <  SRR4302532.103260/94‑1 (MQ=60)

                               AAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCC                                                                 <  SRR4302532.132820/94‑1 (MQ=60)

                               AAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCC                                                                 <  SRR4302532.5397445/94‑1 (MQ=60)

                                 GTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGC                                                               >  SRR4302532.4095388/1‑94 (MQ=60)

                                   TTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                             >  SRR4302532.310962/1‑94 (MQ=60)

                                   TTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                             <  SRR4302532.6162010/94‑1 (MQ=60)

                                    TCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGC                                                            <  SRR4302532.5404704/94‑1 (MQ=60)

                                    TCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGC                                                            >  SRR4302532.5437322/1‑94 (MQ=60)

                                    TCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGC                                                            <  SRR4302532.3748311/94‑1 (MQ=60)

                                     CCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                           >  SRR4302532.3892704/1‑94 (MQ=60)

                                     CCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                           >  SRR4302532.5557117/1‑94 (MQ=60)

                                      CCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACCACATCATTCCCAATCCGCAGCGT                                                          >  SRR4302532.3613464/1‑94 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                         >  SRR4302532.3989807/1‑94 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                         <  SRR4302532.3586059/94‑1 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                         >  SRR4302532.537375/1‑94 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                         >  SRR4302532.4778565/1‑94 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                         <  SRR4302532.1957474/94‑1 (MQ=60)

                                       CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                         <  SRR4302532.752933/94‑1 (MQ=60)

                                       CGTCACGGCGGCCCGGTTGCGGGTGTGGCAGTATCGATTGCTATTCTGCTAATTGG‑CTCATGCC‑GGAACTACATGATTCCCAATCCGCAGaggg                                                         <  SRR4302532.1313645/94‑5 (MQ=60)

                                        GTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGT                                                        >  SRR4302532.3206037/1‑94 (MQ=60)

                                        GTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGT                                                        <  SRR4302532.4164866/94‑1 (MQ=60)

                                        GTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGG                                                        >  SRR4302532.1467735/1‑94 (MQ=60)

                                         TCACTGCGTAGCGGTTGTGGGTGTGGCAGTATCTATTGCTATTCTGGTAATTGG‑GGCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTG                                                       <  SRR4302532.6233616/94‑1 (MQ=53)

                                            CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                    <  SRR4302532.2418875/94‑1 (MQ=60)

                                            CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                    >  SRR4302532.3325893/1‑94 (MQ=60)

                                               CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTC                                                 >  SRR4302532.5595545/1‑94 (MQ=60)

                                               CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTC                                                 >  SRR4302532.231169/1‑94 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                <  SRR4302532.1437287/94‑1 (MQ=60)

                                                GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                <  SRR4302532.6297813/94‑1 (MQ=60)

                                                 TACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTA                                               >  SRR4302532.3489362/1‑94 (MQ=60)

                                                 TACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTA                                               >  SRR4302532.3001870/1‑94 (MQ=60)

                                                 TACCGGTTGCGGGGGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTTCCAATCCGCAGCGTGTGTTTGTCTA                                               >  SRR4302532.3489361/1‑94 (MQ=60)

                                                  ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCCGCGAGTGTTTGTCTAC                                              >  SRR4302532.2369375/1‑94 (MQ=60)

                                                  ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                              <  SRR4302532.309525/94‑1 (MQ=60)

                                                  ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                              <  SRR4302532.2934925/94‑1 (MQ=60)

                                                    CGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGT                                            <  SRR4302532.4101908/94‑1 (MQ=60)

                                                     GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                           >  SRR4302532.1778304/1‑94 (MQ=60)

                                                     GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                           >  SRR4302532.1984609/1‑94 (MQ=60)

                                                     GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                           >  SRR4302532.3974679/1‑94 (MQ=60)

                                                        TGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTAC                                        <  SRR4302532.5603593/94‑1 (MQ=60)

                                                          CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                      <  SRR4302532.5372188/94‑1 (MQ=60)

                                                          CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                      >  SRR4302532.1847397/1‑94 (MQ=60)

                                                          CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                      >  SRR4302532.4259745/1‑94 (MQ=60)

                                                          CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTAATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                      >  SRR4302532.5890399/1‑94 (MQ=60)

                                                           GGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                     <  SRR4302532.816831/94‑1 (MQ=60)

                                                            GGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCTGCAGCGTGTGTTTGTCTACGTCTACAGTG                                    <  SRR4302532.5205718/94‑1 (MQ=60)

                                                            GGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTG                                    >  SRR4302532.3844116/1‑94 (MQ=60)

                                                              TGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCC                                  >  SRR4302532.1343168/1‑94 (MQ=60)

                                                               GTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCA                                 >  SRR4302532.514836/1‑94 (MQ=60)

                                                               GTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCA                                 >  SRR4302532.392628/1‑94 (MQ=60)

                                                                TGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAG                                <  SRR4302532.1638392/94‑1 (MQ=60)

                                                                TGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAG                                <  SRR4302532.296080/94‑1 (MQ=60)

                                                                GGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAG                                <  SRR4302532.296081/94‑1 (MQ=60)

                                                                 GGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGC                               >  SRR4302532.3568555/1‑94 (MQ=60)

                                                                  GCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCG                              <  SRR4302532.618213/94‑1 (MQ=60)

                                                                  GCAGTATCTATTGCTATTCTGCTAATT‑GTCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCG                              <  SRR4302532.1998902/94‑1 (MQ=60)

                                                                   CAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                             >  SRR4302532.5272415/1‑94 (MQ=60)

                                                                   CAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                             <  SRR4302532.4596421/94‑1 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                            >  SRR4302532.1010004/1‑94 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGCGCCAGCGTG                            <  SRR4302532.4338840/94‑1 (MQ=60)

                                                                    AGTATCTATTGCTATTCTGCTAATTGG‑CTCATGACT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCGGCGTG                            >  SRR4302532.3994629/1‑94 (MQ=60)

                                                                     GTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGC                           >  SRR4302532.4683108/1‑94 (MQ=60)

                                                                       ATCTATTGCTGTTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTT                         <  SRR4302532.2344774/94‑1 (MQ=60)

                                                                       ATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTT                         <  SRR4302532.2906255/94‑1 (MQ=60)

                                                                         CTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                       <  SRR4302532.34080/94‑1 (MQ=60)

                                                                         CTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                       <  SRR4302532.34081/94‑1 (MQ=60)

                                                                         CTATTGCTATGCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCATCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                       <  SRR4302532.34077/94‑1 (MQ=60)

                                                                          TATTTCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                      <  SRR4302532.1803722/94‑1 (MQ=60)

                                                                          TATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                      <  SRR4302532.6085520/94‑1 (MQ=60)

                                                                          TATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGGGCTTCCG                      >  SRR4302532.4153138/1‑94 (MQ=60)

                                                                           ATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGG                     >  SRR4302532.3838933/1‑94 (MQ=60)

                                                                           ATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGG                     >  SRR4302532.3198305/1‑94 (MQ=60)

                                                                            ctgcttttctgcgaattgG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCATCGTGTGTGTGTCTACGTCTACAGTGCCAGTGCGCTTCCGGG                    >  SRR4302532.5654141/19‑94 (MQ=60)

                                                                            TTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGG                    <  SRR4302532.6232295/94‑1 (MQ=60)

                                                                            TTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGG                    >  SRR4302532.5153707/1‑94 (MQ=60)

                                                                            TTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGG                    >  SRR4302532.4535491/1‑94 (MQ=60)

                                                                            TTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGG                    <  SRR4302532.4051241/94‑1 (MQ=60)

                                                                             TGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGG                   <  SRR4302532.1141312/94‑1 (MQ=60)

                                                                               CTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                 >  SRR4302532.5144717/1‑94 (MQ=60)

                                                                                TATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTCCGTCTACAGTGCCAGCGTGCTTCCGGGGATG                <  SRR4302532.2514307/94‑1 (MQ=60)

                                                                                TATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG                <  SRR4302532.5902561/94‑1 (MQ=60)

                                                                                   TCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGcgcggggg             >  SRR4302532.549118/1‑86 (MQ=60)

                                                                                     TGCTAATTGG‑CTCATGCCT‑GAACTCCATCATCGCAAATCCGCAGCGTGTGTTTGTCTGCGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCC           <  SRR4302532.3678894/94‑1 (MQ=60)

                                                                                     TGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCC           >  SRR4302532.1685204/1‑94 (MQ=60)

                                                                                     TGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCC           >  SRR4302532.365103/1‑94 (MQ=60)

                                                                                     TGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCC           >  SRR4302532.3167238/1‑94 (MQ=60)

                                                                                     TGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCC           >  SRR4302532.4064741/1‑94 (MQ=60)

                                                                                     TGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGAC           >  SRR4302532.365104/1‑94 (MQ=60)

                                                                                       CTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT         >  SRR4302532.6232120/1‑94 (MQ=60)

                                                                                        TAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGCTGCCATG        >  SRR4302532.4433610/1‑94 (MQ=60)

                                                                                         AATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG       >  SRR4302532.2975658/1‑94 (MQ=60)

                                                                                          ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT      <  SRR4302532.2385749/94‑1 (MQ=60)

                                                                                          ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT      <  SRR4302532.1714531/94‑1 (MQ=60)

                                                                                          ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT      >  SRR4302532.2313919/1‑94 (MQ=60)

                                                                                           ttgG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTT     >  SRR4302532.4120441/4‑94 (MQ=60)

                                                                                           TG‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTT    <  SRR4302532.3831511/94‑1 (MQ=60)

                                                                                           TG‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTT    >  SRR4302532.5416877/1‑94 (MQ=60)

                                                                                            G‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG   >  SRR4302532.2000071/1‑94 (MQ=60)

                                                                                            G‑G‑CTCATGCCT‑GAAATACCTCATTCCCAATCAGGAGCGTGGGTTTGTGTACGTCTACAGTGACTGCAAGCTTCCGGGGATGGTGCCATGGTTTG   >  SRR4302532.3708577/1‑94 (MQ=26)

                                                                                              G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGT  >  SRR4302532.5973297/1‑94 (MQ=60)

AAAAACCGTCAGTTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGT  >  NC_000913/3979442‑3979629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`