Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,051,144 |
Δ1 bp |
intergenic (+146/+305) |
hemN → / ← glnG |
O2‑independent coproporphyrinogen III oxidase/GlnG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,051,143 | 0 | C | . | 99.5%
| 731.9
/ ‑3.5
| 217 | intergenic (+145/+306) | hemN/glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (106/110); minor base G (1/0); total (107/110) |
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
Only 100 of 239 total aligned reads displayed.
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > NC_000913/4051051‑4051230
|
gCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGc > 2:2676742/1‑93 (MQ=255)
gCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGc < 2:269573/93‑1 (MQ=255)
cTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGca > 1:1029349/1‑92 (MQ=255)
cTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGca < 1:5750598/93‑2 (MQ=255)
cTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGGca > 1:2534181/1‑92 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 1:4079956/93‑1 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 1:1383514/93‑1 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 2:4453611/93‑1 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg < 2:6109883/93‑1 (MQ=255)
gaACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTg > 1:2810498/1‑93 (MQ=255)
aaCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGa > 2:1713680/1‑93 (MQ=255)
aCAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAg > 2:4693577/1‑93 (MQ=255)
cAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGc < 1:5048327/93‑1 (MQ=255)
cAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGc < 2:5179165/93‑1 (MQ=255)
gATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatg < 1:2330625/93‑1 (MQ=255)
gATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatg > 1:3726594/1‑93 (MQ=255)
aTTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatga < 1:4910410/93‑1 (MQ=255)
aTTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatga < 1:1255930/93‑1 (MQ=255)
ttGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCatgat < 1:5997059/93‑1 (MQ=255)
gCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGc > 2:5991160/1‑93 (MQ=255)
gCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGc > 2:5381737/1‑93 (MQ=255)
ccTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGcc < 2:5079334/93‑1 (MQ=255)
ccTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGcc > 2:4929624/1‑93 (MQ=255)
ccTGAGGCGCCGGGCAACAAAACCTGTTGAAACTATTGCTTTTGTAGGCCGGAGAAGGCGTGTACGCCGCATCAGG‑CATCTGAGCAGGAGGcc > 2:5489982/1‑93 (MQ=21)
cTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCt > 1:1087628/1‑93 (MQ=255)
cTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGGTTACGCCGCATCAGG‑CATCTGATCATGATGCCt > 2:312928/1‑93 (MQ=37)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa > 2:4857391/1‑93 (MQ=255)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa > 1:2865409/1‑93 (MQ=255)
gATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa < 1:2611414/93‑1 (MQ=255)
gATGAGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGa > 1:4036467/1‑93 (MQ=255)
aTGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAt > 2:5343380/1‑93 (MQ=255)
aTGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAt < 2:2768395/93‑1 (MQ=255)
gcgcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgc < 2:1165776/93‑1 (MQ=255)
cgcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcg < 2:227182/93‑1 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg > 2:3540850/1‑93 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg > 2:1462215/1‑93 (MQ=255)
gcTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcgg < 2:3854159/93‑1 (MQ=255)
cTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggc < 2:860672/93‑1 (MQ=255)
tGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcg > 2:2006949/1‑93 (MQ=255)
ggCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATgcggcgct < 2:4348855/93‑3 (MQ=255)
acaaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTc > 1:95743/1‑93 (MQ=25)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcg < 1:3640011/93‑1 (MQ=25)
caaAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcg > 1:2072997/1‑93 (MQ=21)
aaaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcgc < 2:1066579/93‑1 (MQ=25)
aaaCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTcgcg > 1:1121799/1‑93 (MQ=25)
aCCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTc > 1:1660173/1‑93 (MQ=21)
ccTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCt > 1:5418846/1‑93 (MQ=21)
tGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGAATGATGCCTGATGCGGCGCTGGTCGCGTCTTa < 1:889368/93‑1 (MQ=21)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCa < 1:4271921/93‑1 (MQ=18)
tGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCa < 2:5939640/93‑1 (MQ=18)
aaaTTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAgg < 1:1850013/93‑1 (MQ=18)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGcc < 1:4930316/93‑1 (MQ=18)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGcc > 2:318192/1‑93 (MQ=18)
attattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGcc > 1:3094645/1‑93 (MQ=18)
tattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCtc > 1:3208752/1‑92 (MQ=18)
tattGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATAAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTa < 2:4755639/93‑1 (MQ=17)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACg < 1:758414/93‑1 (MQ=17)
ttGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACg < 1:454720/93‑1 (MQ=18)
tGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGa < 1:2509987/93‑1 (MQ=18)
gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGAc < 1:860012/93‑1 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:3852088/1‑93 (MQ=17)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 2:2938317/1‑93 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt < 2:5558758/93‑1 (MQ=18)
ttttGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACtt > 1:6096963/1‑93 (MQ=17)
tttGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACttt < 2:1075122/93‑1 (MQ=17)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtctc < 2:2463662/93‑1 (MQ=18)
gTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTtctc > 2:4546331/1‑93 (MQ=18)
tAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTcc < 2:4028703/93‑1 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 1:2304490/1‑93 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCa > 2:202775/1‑93 (MQ=18)
cGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATc > 1:59531/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc > 2:978032/1‑93 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc < 1:4358315/93‑1 (MQ=18)
ggATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATcc < 2:3703274/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:2547964/1‑93 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg < 2:1661634/93‑1 (MQ=18)
gATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCg > 2:1000482/1‑93 (MQ=18)
aTAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCgg > 2:1857551/1‑93 (MQ=18)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCTCATCCGGc > 1:5184064/1‑93 (MQ=18)
tAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGc > 2:5872823/1‑93 (MQ=21)
tAAGGCGTTTACGCCGCATCAGG‑CACCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGc > 1:5862026/1‑93 (MQ=21)
aGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAt < 2:1685549/93‑1 (MQ=21)
ggCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATa > 2:2814573/1‑93 (MQ=21)
gTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaac > 2:3486446/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 2:1277090/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:4723611/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:4671316/1‑93 (MQ=25)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:3383028/1‑93 (MQ=21)
tttACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaaca > 1:1966575/1‑93 (MQ=25)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 1:2080754/93‑1 (MQ=25)
tACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAaacaac < 1:1342687/93‑1 (MQ=25)
cgccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGa < 1:3485777/93‑1 (MQ=25)
gccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAg > 2:5975257/1‑93 (MQ=25)
ccgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGc > 1:3058832/1‑93 (MQ=37)
cgcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCt > 2:2573437/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 1:3933943/1‑93 (MQ=37)
gcATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCtt > 2:1940487/1‑93 (MQ=37)
cATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTc < 2:233120/93‑1 (MQ=37)
aTCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGCCTTTCTCCGCATCCGGCATAAACAACGAGCTTCa < 2:3361270/93‑1 (MQ=25)
tCAGG‑CATCTGAGCATGATGCCTGATGCGGCGCTGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAg < 2:236444/93‑1 (MQ=37)
|
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAG > NC_000913/4051051‑4051230
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > NC_000913/4051051‑4051236
|
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCA > SRR4302532.1064140/1‑94 (MQ=60)
GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGGCA > SRR4302532.2618725/1‑94 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG < SRR4302532.728226/94‑1 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG > SRR4302532.1272992/1‑94 (MQ=60)
AGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTG > SRR4302532.2904600/1‑94 (MQ=60)
GAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302532.4216954/94‑1 (MQ=60)
GAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302532.1429872/94‑1 (MQ=60)
GAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGA < SRR4302532.1429873/94‑1 (MQ=60)
AACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAG < SRR4302532.2618827/94‑1 (MQ=60)
AACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAG < SRR4302532.2023226/94‑1 (MQ=60)
CAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCA < SRR4302532.5221540/94‑1 (MQ=60)
AAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCAT > SRR4302532.1111399/1‑94 (MQ=60)
AGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATG > SRR4302532.3851765/1‑94 (MQ=60)
GATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGA < SRR4302532.2408254/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302532.1297938/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302532.318287/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302532.5079134/94‑1 (MQ=60)
ATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGAT < SRR4302532.6196946/94‑1 (MQ=60)
TTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATG < SRR4302532.144093/94‑1 (MQ=60)
TTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATG < SRR4302532.6204213/94‑1 (MQ=60)
TCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCC < SRR4302532.3978157/94‑1 (MQ=60)
GCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCC > SRR4302532.4495488/1‑94 (MQ=60)
CCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCT > SRR4302532.1124045/1‑94 (MQ=60)
CTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTG > SRR4302532.4073237/1‑94 (MQ=60)
TGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGA > SRR4302532.2961247/1‑94 (MQ=60)
TGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGA > SRR4302532.986849/1‑94 (MQ=60)
TGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGAAGGATAAGGCGTTTACGCCGCATCA‑GACATCTGAGAATGATGTCTGA > SRR4302532.6011105/1‑94 (MQ=60)
TGATGAGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGA > SRR4302532.4172440/1‑94 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302532.2698775/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302532.2363633/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAT < SRR4302532.963296/94‑1 (MQ=60)
GATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATC‑GGGCATCTGAGCATGATGCCTGAT > SRR4302532.3599643/1‑94 (MQ=60)
ATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATG < SRR4302532.5080592/94‑1 (MQ=60)
ATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATG < SRR4302532.1287875/94‑1 (MQ=60)
CGCTGGCCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCTTCAGG‑CATCTGAGCATGATGCCTGATGCGG < SRR4302532.2762515/94‑1 (MQ=60)
CTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCG < SRR4302532.4204825/94‑1 (MQ=60)
GGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCG‑‑CG > SRR4302532.912382/1‑94 (MQ=60)
GGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGctg < SRR4302532.6277471/94‑4 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGT > SRR4302532.3643740/1‑94 (MQ=60)
CAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGT < SRR4302532.4526925/94‑1 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTC > SRR4302532.99082/1‑94 (MQ=60)
AACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTC < SRR4302532.5438056/94‑1 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCG > SRR4302532.2142088/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCG > SRR4302532.2113127/1‑94 (MQ=60)
ACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCG > SRR4302532.5386803/1‑94 (MQ=60)
ACAAAACCGGTTGAAATTATTGCTTTTGTAGACCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGCGCATGATGCCTGATGCGGCGC‑TGGTCG > SRR4302532.2142089/1‑94 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGC > SRR4302532.2289966/1‑94 (MQ=60)
CAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGC < SRR4302532.3762150/94‑1 (MQ=60)
AAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCG > SRR4302532.1159257/1‑94 (MQ=60)
AAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGT > SRR4302532.2924219/1‑94 (MQ=60)
AACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTC > SRR4302532.1716432/1‑94 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCT > SRR4302532.5606660/1‑94 (MQ=60)
ACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCT < SRR4302532.6149424/94‑1 (MQ=60)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTATTCCGCATCAGG‑CATCTTAGCATGATTTCTGATGCGGCGCCT‑GTCGCGTCTT > SRR4302532.5641788/1‑94 (MQ=37)
CCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGGTTACGGCGGATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTT > SRR4302532.5360582/1‑94 (MQ=60)
CTGTTTAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACTCCGCATCAGG‑CATCTGAGCATGATGCCTGACGCGGCGC‑TGGTCGCGTCTTA < SRR4302532.4365667/94‑1 (MQ=60)
TGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGAATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTAT < SRR4302532.919752/94‑1 (MQ=60)
TTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCA > SRR4302532.4857582/1‑94 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAG < SRR4302532.5129028/94‑1 (MQ=60)
TGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAG < SRR4302532.4415761/94‑1 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGC > SRR4302532.3783412/1‑94 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGC < SRR4302532.1911414/94‑1 (MQ=60)
AAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGC > SRR4302532.4372839/1‑94 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCC < SRR4302532.258979/94‑1 (MQ=60)
AATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCC > SRR4302532.3197236/1‑94 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCT < SRR4302532.3779887/94‑1 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCT < SRR4302532.5099618/94‑1 (MQ=60)
ATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCT < SRR4302532.4767639/94‑1 (MQ=60)
TTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTC > SRR4302532.3315298/1‑94 (MQ=60)
cttcCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCAGG‑CATCTGAGCATGATGCCTGAGGCCGCGC‑TGGTCGCGTCTTATCAGGCCTACG < SRR4302532.4422190/90‑1 (MQ=49)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGA < SRR4302532.3235844/94‑1 (MQ=60)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGA < SRR4302532.470544/94‑1 (MQ=60)
TTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGA < SRR4302532.784452/94‑1 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTCCGAC < SRR4302532.6198479/94‑1 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGAC < SRR4302532.2593728/94‑1 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGAC < SRR4302532.6361436/94‑1 (MQ=60)
TGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGAC > SRR4302532.3621325/1‑94 (MQ=60)
GCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACT < SRR4302532.889552/94‑1 (MQ=60)
GTTTTATAGGCCGGATAAGGCGTTTCCGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTCCGACTT < SRR4302532.4053617/94‑1 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302532.3982144/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACAACTT > SRR4302532.5903372/1‑94 (MQ=60)
CTTTTGTAGGCCGGATAAGGCGTTTACGACGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTT > SRR4302532.6307408/1‑94 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTT < SRR4302532.3124108/94‑1 (MQ=60)
TTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTT > SRR4302532.299300/1‑94 (MQ=60)
TTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTC < SRR4302532.5004551/94‑1 (MQ=60)
TTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCGGGCCTACGACTTTCT < SRR4302532.2387949/94‑1 (MQ=60)
TTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCT > SRR4302532.4319498/1‑94 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGTCCTACGACTTTCTCC < SRR4302532.4472833/94‑1 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCC < SRR4302532.2427905/94‑1 (MQ=60)
GTAGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCC < SRR4302532.5050778/94‑1 (MQ=60)
AGGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGC > SRR4302532.1005392/1‑94 (MQ=60)
gcccggctaagcccTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATTAGACCTACGACTTTCTCCGCA < SRR4302532.2707737/80‑1 (MQ=60)
GGCCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCA > SRR4302532.2381111/1‑94 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC > SRR4302532.61678/1‑94 (MQ=60)
CCGGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATC < SRR4302532.2822785/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG > SRR4302532.2738924/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCG < SRR4302532.4505950/94‑1 (MQ=60)
AATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGG > SRR4302532.1793156/1‑94 (MQ=60)
ATAAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCTCATCCGGC > SRR4302532.5362657/1‑94 (MQ=60)
ATAAGGCGTTTACGCCGCATCAGG‑CACCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGC > SRR4302532.6065267/1‑94 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302532.3486182/94‑1 (MQ=60)
AAGGCGTTTACGCCGCATCAGG‑CATCTGAACATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCAT < SRR4302532.4972392/94‑1 (MQ=60)
AGGCGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATA > SRR4302532.805404/1‑94 (MQ=60)
CGTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAAC < SRR4302532.1142344/94‑1 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302532.3496170/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302532.2031896/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302532.4830585/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302532.4884781/1‑94 (MQ=60)
GTTTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACA > SRR4302532.5119317/1‑94 (MQ=60)
TTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC < SRR4302532.3421076/94‑1 (MQ=60)
TTACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAAC > SRR4302532.4000247/1‑94 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302532.2150119/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302532.1387577/94‑1 (MQ=60)
TACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACG < SRR4302532.5118013/94‑1 (MQ=60)
ACGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGA < SRR4302532.1615901/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG < SRR4302532.3602556/94‑1 (MQ=60)
CGCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAG > SRR4302532.2616211/1‑94 (MQ=60)
GCCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGC > SRR4302532.3159831/1‑94 (MQ=60)
CCGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCT > SRR4302532.1321485/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGGGGGGC‑TGGTGGCGTCTTATCAGGCCTGCGACTTTCTCCGCATCCGGCAGAAACAATGAGCTT > SRR4302532.1990651/1‑94 (MQ=49)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302532.1990653/1‑94 (MQ=60)
CGCATCAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTT > SRR4302532.4066497/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCCTAAACAACGAGCTTCAGCT > SRR4302532.1877879/1‑94 (MQ=60)
CAGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCT > SRR4302532.5143085/1‑94 (MQ=60)
AGG‑CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTA > SRR4302532.950545/1‑94 (MQ=60)
GATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC < SRR4302532.874590/94‑1 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > SRR4302532.3726774/1‑94 (MQ=60)
CATCTGAGCATGATGCCTGATGCGGCGC‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > SRR4302532.4146673/1‑94 (MQ=60)
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GCTGAGAACAAGATTGCCTGATGCGCTGGGCAACAAAACCTGTTGAAATTATTGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCATCTGAGCATGATGCCTGATGCGGCG‑‑TGGTCGCGTCTTATCAGGCCTACGACTTTCTCCGCATCCGGCATAAACAACGAGCTTCAGCTAAAC > NC_000913/4051051‑4051236
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
