Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,603,664 |
A→G |
noncoding (71/88 nt) |
leuV ← |
tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,603,664 | 0 | A | G | 87.4%
| 388.5
/ 57.0
| 145 | noncoding (71/88 nt) | leuV | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base A (0/2); major base G (89/36); minor base . (15/3); total (104/41) |
| Fisher's exact test for biased strand distribution p-value = 3.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.62e-01 |
Only 100 of 154 total aligned reads displayed.
ATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTT > NC_000913/4603574‑4603753
|
atcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCt > 1:1517181/1‑93 (MQ=255)
atcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCt > 2:5066902/1‑93 (MQ=255)
tcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCCAGG‑AAGAAAAAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGAGGGGGCtt > 1:5163893/1‑93 (MQ=255)
tcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCtt > 2:6099224/1‑93 (MQ=255)
tcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCtt > 1:5739766/1‑93 (MQ=255)
tcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCtg > 1:5271760/1‑92 (MQ=255)
tcatGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCtg > 1:5163892/1‑92 (MQ=255)
gCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCttcagc > 1:3395753/1‑89 (MQ=255)
tgatgaTAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAAccc > 2:5307323/1‑93 (MQ=255)
gatAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCAc > 2:2407461/1‑93 (MQ=255)
gatAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCAc > 2:4482136/1‑93 (MQ=255)
atAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACg > 1:4689014/1‑93 (MQ=255)
atAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACg > 1:3807869/1‑93 (MQ=255)
tAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGt > 1:5858955/1‑93 (MQ=255)
tAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGt > 2:2807243/1‑93 (MQ=255)
aaTGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTc < 1:3948664/93‑1 (MQ=255)
aTGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCg > 1:5565503/1‑93 (MQ=255)
aTTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTaa > 1:2541247/1‑93 (MQ=255)
tttGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAg < 1:6126873/93‑1 (MQ=255)
tttGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAg < 1:6126872/93‑1 (MQ=255)
tttGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAg > 2:1057601/1‑93 (MQ=255)
tttGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAgg > 1:5836006/1‑93 (MQ=255)
gAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGac > 2:3061501/1‑93 (MQ=255)
gAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGac < 2:2348963/93‑1 (MQ=255)
gAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGac > 2:4649449/1‑93 (MQ=255)
aaTCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGaca > 1:5002301/1‑93 (MQ=255)
aTCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGacac > 1:3789313/1‑93 (MQ=255)
aTCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGacac > 1:880827/1‑93 (MQ=255)
tCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACt < 2:2280188/93‑1 (MQ=255)
aaaggAAGAAAAAAAAAGGAAAAAAACAAGAAAGGAAGAAAAGATATTGGGGGGGA‑GGGGGGGGGTTTGACCCCCCACGTCCGTAAGGACACt < 2:1515655/90‑1 (MQ=12)
aGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTaa > 1:1167961/1‑93 (MQ=255)
gggATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAac > 1:5688961/1‑93 (MQ=255)
ggATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAaca > 1:2197044/1‑93 (MQ=255)
gATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACAcc > 2:2152070/1‑93 (MQ=255)
tGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCt > 2:2568550/1‑93 (MQ=255)
tGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCt < 2:3304055/93‑1 (MQ=255)
tGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGAGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACCAACACCt > 1:4971260/1‑93 (MQ=255)
aaaaaaaTAAAGA‑AAGAAAAAAAAAAGGAAGTAAAGATAATTGGGGCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCt < 2:2670994/91‑1 (MQ=18)
gAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTg > 1:6119353/1‑93 (MQ=255)
gAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTg > 2:4175276/1‑93 (MQ=255)
aaaTGAAAG‑AAAAAAAAAGAAAAAAAGTAAAAATAATTGGTGCGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAg < 2:2886780/93‑1 (MQ=17)
aaaTCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAg > 1:5314007/1‑93 (MQ=255)
aaTCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATATTTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGc < 2:4300933/93‑1 (MQ=255)
tCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAg > 2:1866375/1‑93 (MQ=255)
aaaaGA‑AAAAAAAAAGAAAGGAAGTAAAGATAATTGGGGGGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTa < 2:1488424/91‑1 (MQ=18)
aaGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAgc > 2:4955499/1‑93 (MQ=255)
aGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGGGCTTGAACCCCCACGTCCGTAAGGAAACTAACACCTGAAGCTAgc > 2:1688688/1‑93 (MQ=21)
aGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAgcg < 1:5231019/93‑1 (MQ=255)
aGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAgcg > 1:3977522/1‑93 (MQ=255)
aGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAgcgc > 2:1031579/1‑93 (MQ=255)
gg‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAgcgc > 1:6108195/1‑93 (MQ=255)
g‑aagaaACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGcgcg > 2:4404618/1‑93 (MQ=255)
aagaaACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGt > 2:4352800/1‑93 (MQ=255)
aagaaACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGt > 1:4238712/1‑93 (MQ=255)
agaaACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTc > 1:1371404/1‑93 (MQ=255)
agaaACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTc < 1:4373801/93‑1 (MQ=255)
gaaACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGAGCGTCTa > 2:3728429/1‑93 (MQ=255)
aaaCAAGAAAGGAAGTAAATATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTAc < 1:2025260/93‑1 (MQ=255)
aaCAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTAc < 2:5322466/93‑1 (MQ=255)
aCAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTAcc > 2:3560368/1‑93 (MQ=255)
cAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTGTACCa > 1:2746542/1‑93 (MQ=255)
aaGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCaa < 2:3012165/93‑1 (MQ=255)
aaGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAt > 1:927283/1‑93 (MQ=255)
aGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAt < 1:3248956/93‑1 (MQ=255)
aGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAtt > 1:2824960/1‑93 (MQ=255)
aGAAAGGAAGCAAAGATAAGTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGCCCGTAAGGACACGAACACCTGAAGCGAGCGCGTCTACCAAt > 2:5493889/1‑93 (MQ=14)
gAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAtt < 1:3335567/93‑1 (MQ=255)
gAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTc > 2:5919170/1‑93 (MQ=255)
aaaagaaagtaaaga‑aagtGGGGGGG‑GGGGGGGGGCTGGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTc < 2:1673062/92‑1 (MQ=11)
aaaaGGAAGAAAAGAAATTTGGTGCG‑‑GGGGGGGGGTTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTc < 1:5090911/92‑1 (MQ=14)
aaaGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTc > 1:1513428/1‑93 (MQ=255)
aaGGAAGTAGAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc > 1:4186060/1‑93 (MQ=255)
aaGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc > 2:5361671/1‑93 (MQ=255)
ggAAGTAAAGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 1:5381203/93‑1 (MQ=255)
ggAAGAAAAGATAATTGGGGCGA‑GGGGGGGGGTTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 1:3046070/93‑1 (MQ=14)
gAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGcc > 2:2524970/1‑93 (MQ=255)
gAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGcc > 2:4081493/1‑93 (MQ=255)
aGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAc > 1:887682/1‑93 (MQ=255)
tAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGTCACCt > 1:3064194/1‑93 (MQ=255)
aaaGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCtt < 2:2214168/93‑1 (MQ=39)
aaGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCCCCACCTTc > 1:82340/1‑93 (MQ=255)
aGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg > 1:3173211/1‑93 (MQ=37)
aGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg > 2:5763455/1‑93 (MQ=37)
aGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc > 2:5897073/1‑93 (MQ=255)
gATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc > 1:2545111/1‑93 (MQ=25)
gATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc > 1:8116/1‑93 (MQ=25)
gATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc > 2:3920808/1‑93 (MQ=25)
tAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcat > 1:2811177/1‑92 (MQ=17)
tAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcac > 2:2856608/1‑93 (MQ=21)
tAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcac > 2:2045050/1‑93 (MQ=21)
tAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcaca > 2:4246861/1‑93 (MQ=255)
aaTTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATCCCGCCACCTTCGcacg > 1:2170971/1‑92 (MQ=255)
aaTGGGTGCGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcaca < 1:5024280/93‑1 (MQ=11)
aTTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAg > 1:5578362/1‑93 (MQ=21)
gCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCtt > 2:3750538/1‑93 (MQ=255)
ggA‑GGGGGAGGACTCCCCCCCCCACGACCGTAAGGACACTAACCCCTGAAGCTAGCGCGTCTACCATATCCGCCACCTTCGCACAGTCATCtt < 1:5488191/92‑1 (MQ=14)
gA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTa < 2:1832637/93‑1 (MQ=255)
a‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATcattc > 1:1913433/1‑89 (MQ=255)
gggggggggGCTTGCCCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTAc < 2:5639331/92‑1 (MQ=14)
ggggGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACttttt > 1:4776385/1‑93 (MQ=255)
|
ATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGG‑AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTT > NC_000913/4603574‑4603753
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTT > NC_000913/4603571‑4603754
|
GGCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGG < SRR4302532.6021842/94‑1 (MQ=60)
GGCATAATGCTGATGATAATAAATTTAAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGG < SRR4302532.3872320/94‑1 (MQ=60)
CATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCT > SRR4302532.1568422/1‑94 (MQ=60)
ATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCCAGGAAGAAAAAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGAGGGGGCTT > SRR4302532.5341646/1‑94 (MQ=60)
ATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTT > SRR4302532.5939594/1‑94 (MQ=60)
ATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTG > SRR4302532.5302842/1‑94 (MQ=60)
CTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCC < SRR4302532.5467877/94‑1 (MQ=60)
GATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACG > SRR4302532.3936427/1‑94 (MQ=60)
GATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACG > SRR4302532.4848939/1‑94 (MQ=60)
ATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGT > SRR4302532.603424/1‑94 (MQ=60)
ATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGT > SRR4302532.6062109/1‑94 (MQ=60)
ATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGT > SRR4302532.1494069/1‑94 (MQ=60)
ATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGC > SRR4302532.3733873/1‑94 (MQ=60)
AATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCC < SRR4302532.4081754/94‑1 (MQ=60)
AATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCG > SRR4302532.5758757/1‑94 (MQ=60)
AATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAA > SRR4302532.2625998/1‑94 (MQ=60)
ATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGG > SRR4302532.6038591/1‑94 (MQ=60)
TTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGG < SRR4302532.6338295/94‑1 (MQ=60)
TTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGG < SRR4302532.6338296/94‑1 (MQ=60)
TTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGA > SRR4302532.789517/1‑94 (MQ=60)
TGAATCAGGAATAAAAAATCAAGGAAGAAACAAGAAAGAAAGAAAAGATAATGGGTGCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGAC < SRR4302532.3126763/94‑1 (MQ=54)
GAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACA > SRR4302532.5173772/1‑94 (MQ=60)
AATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACAC > SRR4302532.910943/1‑94 (MQ=60)
AATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACAC > SRR4302532.3917149/1‑94 (MQ=60)
ATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTA > SRR4302532.5753952/1‑94 (MQ=60)
CAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAA > SRR4302532.1206978/1‑94 (MQ=60)
AGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAAC > SRR4302532.5274786/1‑94 (MQ=60)
AGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAAC > SRR4302532.5887504/1‑94 (MQ=60)
ggaataaaaaaaaaagaaaaAAACAAGAAAGGAAGTAAAGATAATTGGGGGGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACA < SRR4302532.1885127/74‑1 (MQ=40)
GGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAAC > SRR4302532.3268466/1‑94 (MQ=60)
GGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACA > SRR4302532.2270209/1‑94 (MQ=60)
gatcaaaactgaaggacgaaataagcaagtaaaaAAAGATAATTGGTGCGA‑TGGGGCGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACC < SRR4302532.1108527/60‑1 (MQ=20)
ATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGAGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACCAACACCT > SRR4302532.5141691/1‑94 (MQ=60)
TGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTG > SRR4302532.6330525/1‑94 (MQ=60)
TGAAAAAGAAAGGAAAAAACAAAAAAGGAAGTAAAGATAATTGGTGCGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTG < SRR4302532.2114235/94‑1 (MQ=41)
GAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGA > SRR4302532.2772924/1‑94 (MQ=60)
AAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACAATAACAACTGAA > SRR4302532.3972370/1‑94 (MQ=60)
AAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAG > SRR4302532.5497811/1‑94 (MQ=60)
ATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTA > SRR4302532.2413611/1‑94 (MQ=60)
aaaggaaaaaaaaaaaaagaaagaAAAGATAATTGGTGGGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGC < SRR4302532.5008401/70‑1 (MQ=12)
AAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCG > SRR4302532.4111512/1‑94 (MQ=60)
AGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGC > SRR4302532.6319005/1‑94 (MQ=60)
AGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGC < SRR4302532.5411409/94‑1 (MQ=60)
gaaaaaaaaaaaaaagaagtaaagaaaattggggggggGGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCG < SRR4302532.5185400/56‑1 (MQ=0)
GAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACccccctaaggccactaaaaacccaaaccaagccgc > SRR4302532.6105518/1‑59 (MQ=60)
GAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGT > SRR4302532.4381077/1‑94 (MQ=60)
AAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTC > SRR4302532.1417346/1‑94 (MQ=60)
AGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCT < SRR4302532.912711/94‑1 (MQ=60)
AGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCT < SRR4302532.4522230/94‑1 (MQ=60)
AAACAAGAAAGGAAGTAAATATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACC < SRR4302532.2092780/94‑1 (MQ=44)
ACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTGTACCA > SRR4302532.2838788/1‑94 (MQ=53)
CAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAA > SRR4302532.6157041/1‑94 (MQ=53)
CAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAT > SRR4302532.959043/1‑94 (MQ=51)
AAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGG‑CTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATT > SRR4302532.2919466/1‑94 (MQ=49)
AGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATT < SRR4302532.3356825/94‑1 (MQ=46)
GAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCCATTC > SRR4302532.1564543/1‑94 (MQ=43)
GAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTC < SRR4302532.3446844/94‑1 (MQ=45)
AAAAGGAAGAAAAGAAATTTGGTGCG‑‑GGGGGGGGGTTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCC < SRR4302532.5265973/94‑1 (MQ=0)
AAAGGAAGTAGAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCC > SRR4302532.4326492/1‑94 (MQ=29)
AAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCG > SRR4302532.2905429/1‑94 (MQ=40)
AGGAAGTAAAGATAATTGGAGCGA‑GGGGGGGGGCTTGAAACCCCACGTCCGTAAGGACACTAAGACCTGAAGCTAGCGagtacaccgaatactc > SRR4302532.2945607/1‑78 (MQ=35)
GGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCC < SRR4302532.5567593/94‑1 (MQ=37)
GGAAGAAAAGATAATTGGGGCGA‑GGGGGGGGGTTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCC < SRR4302532.3146597/94‑1 (MQ=19)
AAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAC > SRR4302532.918024/1‑94 (MQ=30)
AAGTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAC < SRR4302532.6335763/94‑1 (MQ=30)
GTAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGTCACCT > SRR4302532.3165414/1‑94 (MQ=24)
TAAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAATCCGCCACCTT > SRR4302532.5652624/1‑94 (MQ=22)
AAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTC < SRR4302532.3416898/94‑1 (MQ=20)
AAAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCCCCACCTTC > SRR4302532.85249/1‑94 (MQ=19)
AAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCG > SRR4302532.3278594/1‑94 (MQ=15)
AAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCG > SRR4302532.4280712/1‑94 (MQ=15)
AAGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCG > SRR4302532.4487045/1‑94 (MQ=15)
AGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGC > SRR4302532.2939144/1‑94 (MQ=10)
AGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGC > SRR4302532.8464/1‑94 (MQ=10)
AGATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGC > SRR4302532.2629992/1‑94 (MQ=10)
GATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAAATCCGCCCCCTTCGCC > SRR4302532.5854781/1‑94 (MQ=6)
ATAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCAC > SRR4302532.2905294/1‑94 (MQ=8)
TAATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATCCCGCCACCTTCGCACG > SRR4302532.2243550/1‑94 (MQ=5)
AATTGGTGCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG < SRR4302532.847859/94‑1 (MQ=7)
AATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG > SRR4302532.5772040/1‑94 (MQ=8)
AATGGGTGCGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAG < SRR4302532.5196598/94‑1 (MQ=2)
ATTGGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAcg > SRR4302532.712630/1‑92 (MQ=3)
GGTGGGA‑GGGGGGGTACTTGACCCCCCACGTCCGTAAGGACACTAACATCTGAAGCTAGCGCGTCTCCCAATTCCGCCTCCTTCGCACAGTCAT < SRR4302532.4525692/94‑1 (MQ=9)
GGTGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGGAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAccaat > SRR4302532.3108089/1‑89 (MQ=0)
GGGGCGG‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAT < SRR4302532.1760968/94‑1 (MQ=11)
TGCGA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACActcacat > SRR4302532.4270586/1‑87 (MQ=0)
gggggaGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCT < SRR4302532.5074915/88‑1 (MQ=22)
GCGA‑GGGGGGGGGCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTT < SRR4302532.5342490/94‑1 (MQ=24)
GA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAcccatcccaa > SRR4302532.322702/1‑84 (MQ=0)
GA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGcatcattat > SRR4302532.1834506/1‑85 (MQ=3)
GA‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCattc > SRR4302532.1977028/1‑90 (MQ=20)
A‑GGGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTactattcat > SRR4302532.2473551/1‑85 (MQ=5)
GGGGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTT > SRR4302532.4873741/1‑94 (MQ=38)
GGTGGTCTTGACCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTT < SRR4302532.5060334/94‑1 (MQ=41)
GGGGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTT > SRR4302532.4940859/1‑94 (MQ=43)
GGGTCTTGAACCCCCACGTCCATAAGGACACTAACGCCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTTCGCACAGTCATCTTACTTTTTTT < SRR4302532.992989/94‑1 (MQ=42)
GGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTT > SRR4302532.3532991/1‑94 (MQ=48)
GGGGCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTT > SRR4302532.3594852/1‑94 (MQ=48)
|
GGCATCATGCTGATGATAATGAATTTGAATCAGGGATGAAAAATCAAGGAAGAAACAAGAAAGGAAGTAAAGATAATTGGTGCGA‑GGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTT > NC_000913/4603571‑4603754
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
