Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCAGGAT  >  NC_000913/1605356‑1605542
                                                                                             |                                                                                             
ACGGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGT                                                                                               <  SRR4302532.13580/94‑1 (MQ=60)
ACGGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGC                                                                                               >  SRR4302532.6334225/1‑94 (MQ=60)
 CGGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTG                                                                                              <  SRR4302532.824070/94‑1 (MQ=60)
 CGGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTG                                                                                              <  SRR4302532.3583710/94‑1 (MQ=60)
  GGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGC                                                                                             >  SRR4302532.4958480/1‑94 (MQ=60)
   GGAGTAAAAAAATGTCTGACTGGTACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCC                                                                                            <  SRR4302532.3619675/94‑1 (MQ=60)
    GAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCG                                                                                           <  SRR4302532.2718673/94‑1 (MQ=60)
      GTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCT                                                                                         >  SRR4302532.431906/1‑94 (MQ=60)
        AAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGG                                                                                       >  SRR4302532.6099267/1‑94 (MQ=60)
        AAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGG                                                                                       <  SRR4302532.483681/94‑1 (MQ=60)
         AAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGA                                                                                      >  SRR4302532.5152904/1‑94 (MQ=60)
           AAAATGTCTGACTGGAACCCCTCTTTATATCTACCCTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAA                                                                                    <  SRR4302532.2484510/94‑1 (MQ=60)
           AAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGATGGAGCTGCTTGCCAGAGTGCCGCTGGAAA                                                                                    >  SRR4302532.6218919/1‑94 (MQ=60)
            AAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAA                                                                                   <  SRR4302532.5725156/94‑1 (MQ=60)
             AATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAAT                                                                                  <  SRR4302532.2566523/94‑1 (MQ=60)
              ATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATG                                                                                 <  SRR4302532.6189612/94‑1 (MQ=60)
                GTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTC                                                                               <  SRR4302532.3234346/94‑1 (MQ=60)
                  CTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGA                                                                             >  SRR4302532.6004749/1‑94 (MQ=60)
                    GACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAAT                                                                           >  SRR4302532.3603517/1‑94 (MQ=60)
                     ACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATA                                                                          >  SRR4302532.2732463/1‑94 (MQ=60)
                      CTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATAT                                                                         <  SRR4302532.696229/94‑1 (MQ=60)
                      CTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATAT                                                                         >  SRR4302532.5112902/1‑94 (MQ=60)
                       TGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATG                                                                        >  SRR4302532.2271723/1‑94 (MQ=60)
                       TGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATG                                                                        >  SRR4302532.3248590/1‑94 (MQ=60)
                       TGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATG                                                                        >  SRR4302532.3248589/1‑94 (MQ=60)
                       TGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATG                                                                        >  SRR4302532.2820582/1‑94 (MQ=60)
                       TGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATG                                                                        <  SRR4302532.1873413/94‑1 (MQ=60)
                        TGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGT                                                                       <  SRR4302532.2753351/94‑1 (MQ=60)
                        GGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGT                                                                       <  SRR4302532.2576733/94‑1 (MQ=60)
                        GGAACCCCTCTTTATATCTAAACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTAGAATATGT                                                                       >  SRR4302532.3455880/1‑94 (MQ=60)
                         GAACCCCTTTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTT                                                                      <  SRR4302532.1327303/94‑1 (MQ=60)
                          AACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTG                                                                     >  SRR4302532.3109913/1‑94 (MQ=60)
                             CCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGATTGCCGCTGGAAAATGTCGAATATGTTGCCT                                                                  >  SRR4302532.3510891/1‑94 (MQ=60)
                             CCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCG                                                                  <  SRR4302532.6190975/94‑1 (MQ=60)
                              CCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGA                                                                 >  SRR4302532.3921160/1‑94 (MQ=60)
                               CTCTTTATATCTACACTTTTCCGCTGAACGATCTCGTCCGGCGGTGGATCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGAT                                                                <  SRR4302532.3257786/94‑1 (MQ=60)
                                TCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATC                                                               <  SRR4302532.3260922/94‑1 (MQ=60)
                                TCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATC                                                               <  SRR4302532.3719195/94‑1 (MQ=60)
                                TCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATC                                                               <  SRR4302532.3503558/94‑1 (MQ=60)
                                 CTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCT                                                              <  SRR4302532.4931550/94‑1 (MQ=60)
                                 CTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCT                                                              >  SRR4302532.2137438/1‑94 (MQ=60)
                                   TTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTG                                                            >  SRR4302532.2876252/1‑94 (MQ=60)
                                     ATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGC                                                          >  SRR4302532.406342/1‑94 (MQ=60)
                                     ATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGC                                                          >  SRR4302532.3412190/1‑94 (MQ=60)
                                      TATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCT                                                         <  SRR4302532.5392138/94‑1 (MQ=60)
                                      TATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCT                                                         >  SRR4302532.5084014/1‑94 (MQ=60)
                                      TATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCT                                                         >  SRR4302532.4931954/1‑94 (MQ=60)
                                       ATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTG                                                        >  SRR4302532.2725535/1‑94 (MQ=60)
                                         CTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTG                                                      >  SRR4302532.3103342/1‑94 (MQ=60)
                                         CTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTG                                                      >  SRR4302532.4733142/1‑94 (MQ=60)
                                         CTACACTTTTCCGCTGAACGATCGAGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTG                                                      >  SRR4302532.1147533/1‑94 (MQ=60)
                                            CACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCC                                                   <  SRR4302532.720706/94‑1 (MQ=60)
                                             ACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCC                                                  >  SRR4302532.1266233/1‑94 (MQ=60)
                                             ACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCC                                                  <  SRR4302532.5230981/94‑1 (MQ=60)
                                               TTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAG                                                <  SRR4302532.4489406/94‑1 (MQ=60)
                                               TTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAG                                                >  SRR4302532.463211/1‑94 (MQ=60)
                                                TTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGG                                               <  SRR4302532.4353672/94‑1 (MQ=60)
                                                 TTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGT                                              >  SRR4302532.338482/1‑94 (MQ=60)
                                                 TTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGT                                              >  SRR4302532.338483/1‑94 (MQ=60)
                                                 TTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGT                                              >  SRR4302532.1285525/1‑94 (MQ=60)
                                                    CGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAAC                                           >  SRR4302532.4441263/1‑94 (MQ=60)
                                                    CGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAAC                                           >  SRR4302532.4286771/1‑94 (MQ=60)
                                                     GCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACA                                          <  SRR4302532.3749135/94‑1 (MQ=60)
                                                     GCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACA                                          <  SRR4302532.2334649/94‑1 (MQ=60)
                                                     GCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACA                                          >  SRR4302532.3535750/1‑94 (MQ=60)
                                                      CTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAG                                         >  SRR4302532.6148122/1‑94 (MQ=60)
                                                       TGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGC                                        >  SRR4302532.1406474/1‑94 (MQ=60)
                                                       TGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGGAACAGC                                        >  SRR4302532.3717740/1‑94 (MQ=60)
                                                       TGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGC                                        <  SRR4302532.5700991/94‑1 (MQ=60)
                                                       TGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGC                                        >  SRR4302532.203389/1‑94 (MQ=60)
                                                          ACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACC                                     <  SRR4302532.1194658/94‑1 (MQ=60)
                                                          ACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACC                                     >  SRR4302532.132030/1‑94 (MQ=60)
                                                          ACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACC                                     <  SRR4302532.1679628/94‑1 (MQ=60)
                                                           CGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCG                                    >  SRR4302532.4122718/1‑94 (MQ=60)
                                                            GATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGC                                   >  SRR4302532.5003849/1‑94 (MQ=60)
                                                            GATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAAAAGCACCGC                                   >  SRR4302532.1346117/1‑94 (MQ=60)
                                                             ATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCC                                  >  SRR4302532.481491/1‑94 (MQ=60)
                                                             ATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCC                                  <  SRR4302532.4006803/94‑1 (MQ=60)
                                                              TCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCC                                 >  SRR4302532.2499690/1‑94 (MQ=60)
                                                               CGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTTCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCT                                <  SRR4302532.3898570/94‑1 (MQ=60)
                                                               CGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCT                                >  SRR4302532.1503872/1‑94 (MQ=60)
                                                                GCGTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTT                               >  SRR4302532.130905/1‑94 (MQ=60)
                                                                 CGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTC                              >  SRR4302532.4140986/1‑94 (MQ=60)
                                                                  GTCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCT                             >  SRR4302532.1890291/1‑94 (MQ=60)
                                                                  GTCCGGCGGGGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACACCACCGCCCTTCT                             >  SRR4302532.2163032/1‑94 (MQ=60)
                                                                   TCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTA                            >  SRR4302532.5380209/1‑94 (MQ=60)
                                                                   GCCGGCGGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTA                            <  SRR4302532.1779029/94‑1 (MQ=60)
                                                                        CGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACA                       >  SRR4302532.2043245/1‑94 (MQ=60)
                                                                         GGTGGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAA                      >  SRR4302532.4294900/1‑94 (MQ=60)
                                                                          GTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAAC                     >  SRR4302532.1566336/1‑94 (MQ=60)
                                                                            GGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGT                   >  SRR4302532.719290/1‑94 (MQ=60)
                                                                            GGAGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGT                   >  SRR4302532.5757006/1‑94 (MQ=60)
                                                                             GAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTT                  <  SRR4302532.2139463/94‑1 (MQ=60)
                                                                              AGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTG                 >  SRR4302532.665201/1‑94 (MQ=60)
                                                                              AGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTG                 <  SRR4302532.1139958/94‑1 (MQ=60)
                                                                              AGCTGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTG                 <  SRR4302532.3685420/94‑1 (MQ=60)
                                                                                 TGCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCC              <  SRR4302532.6194760/94‑1 (MQ=60)
                                                                                  GCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCT             <  SRR4302532.2243867/94‑1 (MQ=60)
                                                                                  GCTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCT             <  SRR4302532.5532231/94‑1 (MQ=60)
                                                                                   GTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTG            <  SRR4302532.2265317/94‑1 (MQ=60)
                                                                                   CTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTG            <  SRR4302532.4495614/94‑1 (MQ=60)
                                                                                   CTTGCCAGAGCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCACTTCTACAACAACGTTGGCCTG            >  SRR4302532.2346957/1‑94 (MQ=60)
                                                                                    TTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGC           <  SRR4302532.2553052/94‑1 (MQ=60)
                                                                                     TGCCAGAGTGCCGCTGGAAAAAGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACATCATCGCCCTTCTACAATAACGTTGTCCTGCG          >  SRR4302532.5874738/1‑94 (MQ=60)
                                                                                      GCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTAGCCTGCGG         <  SRR4302532.1606035/94‑1 (MQ=60)
                                                                                       CCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGC        >  SRR4302532.5795619/1‑94 (MQ=60)
                                                                                         AGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCA      >  SRR4302532.4073024/1‑94 (MQ=60)
                                                                                           AGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCAGG    >  SRR4302532.1246247/1‑94 (MQ=60)
                                                                                            GCGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCAGGA   <  SRR4302532.4955474/94‑1 (MQ=60)
                                                                                             TGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCAGGAT  <  SRR4302532.3625655/94‑1 (MQ=60)
                                                                                             CGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCAGGAT  >  SRR4302532.574755/1‑94 (MQ=60)
                                                                                             |                                                                                             
ACGGGAGTAAAAAAATGTCTGACTGGAACCCCTCTTTATATCTACACTTTTCCGCTGAACGATCGCGTCCGGCGGTGGAGCTGCTTGCCAGAGTGCCGCTGGAAAATGTCGAATATGTTGCCGATCTTGGCTGTGGCCCAGGTAACAGCACCGCCCTTCTACAACAACGTTGGCCTGCGGCCAGGAT  >  NC_000913/1605356‑1605542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑