Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGCGCGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGGCTTACT  >  NC_000913/1625261‑1625447
                                                                                             |                                                                                             
AAGCGCGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGG                                                                                               >  SRR4302532.6300968/1‑94 (MQ=60)
AAGCGCGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGG                                                                                               <  SRR4302532.2546755/94‑1 (MQ=60)
AAGCGCGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGA                                                                                               >  SRR4302532.4715655/1‑94 (MQ=60)
AAGCGCGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGA                                                                                               >  SRR4302532.5821590/1‑94 (MQ=60)
AAGCGCCATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTAATCGACTGCCGTGCGATAGTGATGATTGCCAATTTGATCAAAATGGGGG                                                                                               <  SRR4302532.2546754/94‑1 (MQ=60)
 AGCGCGATGGCAGCAATTTCTGCCCGCTTGTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGG                                                                                              <  SRR4302532.6054250/94‑1 (MQ=60)
     CGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAG                                                                                          >  SRR4302532.939909/1‑94 (MQ=60)
     CGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAG                                                                                          >  SRR4302532.2460518/1‑94 (MQ=60)
     CGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAG                                                                                          >  SRR4302532.5230314/1‑94 (MQ=60)
      GATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGA                                                                                         >  SRR4302532.2650408/1‑94 (MQ=60)
      GATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGA                                                                                         >  SRR4302532.1269487/1‑94 (MQ=60)
      GATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGA                                                                                         >  SRR4302532.2785145/1‑94 (MQ=60)
       ATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGAT                                                                                        <  SRR4302532.4975803/94‑1 (MQ=60)
         GGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATAC                                                                                      <  SRR4302532.943929/94‑1 (MQ=60)
         GGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATAC                                                                                      <  SRR4302532.1833053/94‑1 (MQ=60)
          GCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACG                                                                                     <  SRR4302532.4573385/94‑1 (MQ=60)
           CAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGG                                                                                    >  SRR4302532.5787754/1‑94 (MQ=60)
           CAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGG                                                                                    <  SRR4302532.6023326/94‑1 (MQ=60)
           CAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGG                                                                                    <  SRR4302532.2381550/94‑1 (MQ=60)
            AGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGC                                                                                   >  SRR4302532.6194138/1‑94 (MQ=60)
              CAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAG                                                                                 <  SRR4302532.1164032/94‑1 (MQ=60)
              CAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAG                                                                                 >  SRR4302532.2825389/1‑94 (MQ=60)
               AATTTCTGCCCGCGTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGT                                                                                <  SRR4302532.5657826/94‑1 (MQ=60)
                ATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTG                                                                               <  SRR4302532.3085231/94‑1 (MQ=60)
                  TTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTG                                                                             <  SRR4302532.4048209/94‑1 (MQ=60)
                  TTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTG                                                                             <  SRR4302532.875569/94‑1 (MQ=60)
                    CTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCT                                                                           >  SRR4302532.1410235/1‑94 (MQ=60)
                     TGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTT                                                                          >  SRR4302532.2140581/1‑94 (MQ=60)
                      GCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTT                                                                         >  SRR4302532.6282130/1‑94 (MQ=60)
                       CCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTG                                                                        >  SRR4302532.4994732/1‑94 (MQ=60)
                       CCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTG                                                                        <  SRR4302532.3507880/94‑1 (MQ=60)
                       CCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTG                                                                        >  SRR4302532.2717041/1‑94 (MQ=60)
                        CCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTTGCAATTTGATCAAAATGGGGAGCCAGCTACGGCAGTGTGCTTTGC                                                                       >  SRR4302532.5730339/1‑94 (MQ=60)
                        CCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGC                                                                       <  SRR4302532.521096/94‑1 (MQ=60)
                        CCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGC                                                                       >  SRR4302532.3074565/1‑94 (MQ=60)
                        CCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGC                                                                       <  SRR4302532.29830/94‑1 (MQ=60)
                         CGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCA                                                                      >  SRR4302532.2871341/1‑94 (MQ=60)
                           CTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACA                                                                    >  SRR4302532.1294950/1‑94 (MQ=60)
                            TTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAA                                                                   <  SRR4302532.4741147/94‑1 (MQ=60)
                              TTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGG                                                                 >  SRR4302532.3634640/1‑94 (MQ=60)
                               TGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGA                                                                <  SRR4302532.2355089/94‑1 (MQ=60)
                                GCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAA                                                               <  SRR4302532.3016039/94‑1 (MQ=60)
                                 CTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAA                                                              <  SRR4302532.3206250/94‑1 (MQ=60)
                                  TGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAG                                                             >  SRR4302532.5474805/1‑94 (MQ=60)
                                    CATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGA                                                           >  SRR4302532.5467876/1‑94 (MQ=60)
                                      TTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATT                                                         <  SRR4302532.5589429/94‑1 (MQ=60)
                                       TCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTC                                                        >  SRR4302532.555106/1‑94 (MQ=60)
                                         CCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGTTTAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAATGATTCAT                                                      >  SRR4302532.5647266/1‑94 (MQ=60)
                                         CCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCAT                                                      >  SRR4302532.3705956/1‑94 (MQ=60)
                                         CCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCAT                                                      >  SRR4302532.1181895/1‑94 (MQ=60)
                                         CCTCATCGAATGCCGGCCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCAT                                                      <  SRR4302532.323747/94‑1 (MQ=60)
                                          CTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATT                                                     >  SRR4302532.3029155/1‑94 (MQ=60)
                                             ATCGAATGCCGGGCGATAGTGATGATTGGCATTTTGATCAAAATGGGGGGCCAGATACGGCAGGGTGGTTTGCACAATGAAAGGATTCATattt                                                  >  SRR4302532.4482985/1‑90 (MQ=60)
                                             ATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTT                                                  >  SRR4302532.314652/1‑94 (MQ=60)
                                             ATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTT                                                  >  SRR4302532.146461/1‑94 (MQ=60)
                                              TCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTG                                                 <  SRR4302532.2616342/94‑1 (MQ=60)
                                               CGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGT                                                <  SRR4302532.6304310/94‑1 (MQ=60)
                                               CGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGT                                                <  SRR4302532.2574102/94‑1 (MQ=60)
                                                 AATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCA                                              <  SRR4302532.6186679/94‑1 (MQ=60)
                                                 AATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCA                                              <  SRR4302532.3911044/94‑1 (MQ=60)
                                                  ATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCAT                                             <  SRR4302532.1481782/94‑1 (MQ=60)
                                                   TGCCGGGCGATAGTGATGATTGGCAGTTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATT                                            <  SRR4302532.3905582/94‑1 (MQ=60)
                                                   TGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATT                                            >  SRR4302532.4267198/1‑94 (MQ=60)
                                                   TGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATT                                            >  SRR4302532.1826313/1‑94 (MQ=60)
                                                    GCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTT                                           >  SRR4302532.6186586/1‑94 (MQ=60)
                                                    GCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTT                                           >  SRR4302532.19159/1‑94 (MQ=60)
                                                     CCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTT                                          >  SRR4302532.2701664/1‑94 (MQ=60)
                                                     CCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTT                                          <  SRR4302532.876770/94‑1 (MQ=60)
                                                      CGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTC                                         >  SRR4302532.2514144/1‑94 (MQ=60)
                                                       GGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCT                                        >  SRR4302532.3993991/1‑94 (MQ=60)
                                                         GCGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGGCATTTTCTTC                                      >  SRR4302532.2126633/1‑94 (MQ=60)
                                                         GCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTC                                      >  SRR4302532.3704286/1‑94 (MQ=60)
                                                          CGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCT                                     >  SRR4302532.3285798/1‑94 (MQ=60)
                                                          CGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCT                                     <  SRR4302532.5580303/94‑1 (MQ=60)
                                                          CGATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCT                                     <  SRR4302532.5580306/94‑1 (MQ=60)
                                                           GATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCAAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTC                                    >  SRR4302532.2682093/1‑94 (MQ=60)
                                                            ATAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCC                                   >  SRR4302532.6259999/1‑94 (MQ=60)
                                                            ATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCC                                   <  SRR4302532.2243470/94‑1 (MQ=60)
                                                             TAGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCT                                  <  SRR4302532.4836834/94‑1 (MQ=60)
                                                             TAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCT                                  >  SRR4302532.5055995/1‑94 (MQ=60)
                                                              AGTGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTG                                 >  SRR4302532.6019058/1‑94 (MQ=60)
                                                                TGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAA                               >  SRR4302532.3675718/1‑94 (MQ=60)
                                                                TGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAA                               <  SRR4302532.1610737/94‑1 (MQ=60)
                                                                TGATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAA                               >  SRR4302532.3678264/1‑94 (MQ=60)
                                                                TGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAA                               <  SRR4302532.3794926/94‑1 (MQ=60)
                                                                 GATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAAC                              >  SRR4302532.249041/1‑94 (MQ=60)
                                                                 GATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAAC                              >  SRR4302532.2459882/1‑94 (MQ=60)
                                                                 GATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAAC                              <  SRR4302532.2236538/94‑1 (MQ=60)
                                                                  ATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACG                             >  SRR4302532.4824833/1‑94 (MQ=60)
                                                                  ATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACG                             >  SRR4302532.5898302/1‑94 (MQ=60)
                                                                  ATGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACG                             <  SRR4302532.803663/94‑1 (MQ=60)
                                                                  ATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACG                             >  SRR4302532.5386471/1‑94 (MQ=60)
                                                                  ATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACG                             >  SRR4302532.1262509/1‑94 (MQ=60)
                                                                   TGATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGC                            >  SRR4302532.3592674/1‑94 (MQ=60)
                                                                   TGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGC                            >  SRR4302532.5587381/1‑94 (MQ=60)
                                                                    GATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCG                           >  SRR4302532.2262608/1‑94 (MQ=60)
                                                                    GATTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCG                           >  SRR4302532.2940972/1‑94 (MQ=60)
                                                                     ATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGA                          >  SRR4302532.5243980/1‑94 (MQ=60)
                                                                      TTGGCAATTTGATCAAAGTGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAG                         <  SRR4302532.5820511/94‑1 (MQ=60)
                                                                      TTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAG                         >  SRR4302532.5618386/1‑94 (MQ=60)
                                                                      TTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAG                         >  SRR4302532.50021/1‑94 (MQ=60)
                                                                      TTGGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAG                         >  SRR4302532.3293007/1‑94 (MQ=60)
                                                                      TTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAG                         >  SRR4302532.3769723/1‑94 (MQ=60)
                                                                        GGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGT                       >  SRR4302532.949230/1‑94 (MQ=60)
                                                                        GGCAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGT                       >  SRR4302532.2296197/1‑94 (MQ=60)
                                                                        GGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGT                       <  SRR4302532.4915576/94‑1 (MQ=60)
                                                                         GCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTG                      >  SRR4302532.5723781/1‑94 (MQ=60)
                                                                          CAATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGT                     <  SRR4302532.107114/94‑1 (MQ=60)
                                                                           AATTTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGGGTT                    >  SRR4302532.1425409/1‑94 (MQ=60)
                                                                           AATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTT                    >  SRR4302532.447765/1‑94 (MQ=60)
                                                                           AATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTT                    >  SRR4302532.2743643/1‑94 (MQ=60)
                                                                              TTGATCAAAATGGGGGTCCACATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCA                 <  SRR4302532.1473508/94‑1 (MQ=60)
                                                                              TTGATCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCA                 <  SRR4302532.1345293/94‑1 (MQ=60)
                                                                              TTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCA                 <  SRR4302532.2104694/94‑1 (MQ=60)
                                                                               TGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCAT                <  SRR4302532.4862290/94‑1 (MQ=60)
                                                                                GATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATA               <  SRR4302532.2159626/94‑1 (MQ=60)
                                                                                  TCAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGC             <  SRR4302532.5598357/94‑1 (MQ=60)
                                                                                  ACAAAATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGC             <  SRR4302532.4184316/94‑1 (MQ=60)
                                                                                   CAAAATGGGGGGCGAGATACGGCAGTGTGCTTTGCACAAGTAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCG            <  SRR4302532.3354877/94‑1 (MQ=60)
                                                                                    AAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGT           >  SRR4302532.6279299/1‑94 (MQ=60)
                                                                                      AATGGGGGGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAG         <  SRR4302532.5561885/94‑1 (MQ=60)
                                                                                      AATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAG         <  SRR4302532.3894675/94‑1 (MQ=60)
                                                                                      AATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAG         <  SRR4302532.1277790/94‑1 (MQ=60)
                                                                                       ATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGG        >  SRR4302532.4208073/1‑94 (MQ=60)
                                                                                       ATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGG        >  SRR4302532.5246619/1‑94 (MQ=60)
                                                                                       ATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGG        >  SRR4302532.1289058/1‑94 (MQ=60)
                                                                                         GGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGGCT      <  SRR4302532.400845/94‑1 (MQ=60)
                                                                                         GGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGGCT      <  SRR4302532.5513639/94‑1 (MQ=60)
                                                                                             GGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGGCTTACT  >  SRR4302532.2450971/1‑94 (MQ=60)
                                                                                             |                                                                                             
AAGCGCGATGGCAGCAATTTCTGCCCGCTTTTGCTGCATTCCCTCATCGAATGCCGGGCGATAGTGATGATTGGCAATTTGATCAAAATGGGGAGCCAGATACGGCAGTGTGCTTTGCACAAGGAAAGGATTCATTGTTGTCATTTTCTTCTCCTGAACGCGAGGTGTTCCATAGCGTAGGCTTACT  >  NC_000913/1625261‑1625447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑