Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACTTATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTG  >  NC_000913/1733500‑1733684
                                                                                           |                                                                                             
GACTTATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATA                                                                                             <  SRR4302532.1861145/94‑1 (MQ=60)
  CTTATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATT                                                                                           >  SRR4302532.1051601/1‑94 (MQ=60)
   TTATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTC                                                                                          <  SRR4302532.2633895/94‑1 (MQ=60)
   TTATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTC                                                                                          >  SRR4302532.5752423/1‑94 (MQ=60)
    TATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCA                                                                                         <  SRR4302532.1484834/94‑1 (MQ=60)
      TGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGTAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCTAC                                                                                       >  SRR4302532.5665839/1‑94 (MQ=60)
       GTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACA                                                                                      >  SRR4302532.55222/1‑94 (MQ=60)
          ACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACG                                                                                   <  SRR4302532.2738800/94‑1 (MQ=60)
          ACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACG                                                                                   >  SRR4302532.151899/1‑94 (MQ=60)
           CTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGC                                                                                  >  SRR4302532.3970517/1‑94 (MQ=60)
           CTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGC                                                                                  >  SRR4302532.4400564/1‑94 (MQ=60)
            TAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCA                                                                                 >  SRR4302532.554912/1‑94 (MQ=60)
            TAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCA                                                                                 <  SRR4302532.4937714/94‑1 (MQ=60)
            TAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCA                                                                                 >  SRR4302532.4462603/1‑94 (MQ=60)
            CAACCTGAACAACCTTATTAAAGGGTCCGCGTTTGAAGGTAAATCCCTTGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCA                                                                                 <  SRR4302532.810876/94‑1 (MQ=60)
             AACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAG                                                                                <  SRR4302532.4226788/94‑1 (MQ=60)
              ACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGC                                                                               >  SRR4302532.5405307/1‑94 (MQ=60)
               CCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCT                                                                              >  SRR4302532.5425593/1‑94 (MQ=60)
                 TGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCA                                                                            <  SRR4302532.1474045/94‑1 (MQ=60)
                 TGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCA                                                                            >  SRR4302532.4737200/1‑94 (MQ=60)
                  GAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAG                                                                           <  SRR4302532.3837074/94‑1 (MQ=60)
                  GAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAG                                                                           >  SRR4302532.3935428/1‑94 (MQ=60)
                  GAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAG                                                                           >  SRR4302532.1301896/1‑94 (MQ=60)
                  GAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAG                                                                           <  SRR4302532.4801004/94‑1 (MQ=60)
                   AACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGG                                                                          <  SRR4302532.4293847/94‑1 (MQ=60)
                    ACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGT                                                                         <  SRR4302532.3745665/94‑1 (MQ=60)
                     CAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGGAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTC                                                                        >  SRR4302532.284607/1‑94 (MQ=60)
                     CAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTC                                                                        >  SRR4302532.284606/1‑94 (MQ=60)
                      AACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCT                                                                       >  SRR4302532.4944549/1‑94 (MQ=60)
                      AACCTGATTAAAGGTACCGAGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCT                                                                       <  SRR4302532.3553924/94‑1 (MQ=60)
                       ACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTG                                                                      >  SRR4302532.753024/1‑94 (MQ=60)
                       ACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTG                                                                      <  SRR4302532.1733825/94‑1 (MQ=60)
                        CCTGATTAGAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGTTGGCATATTCAACAACGCAGCTCAGGTCTGG                                                                     <  SRR4302532.4811325/94‑1 (MQ=60)
                        CCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGG                                                                     <  SRR4302532.4053875/94‑1 (MQ=60)
                         CTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGA                                                                    >  SRR4302532.681628/1‑94 (MQ=60)
                          TGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAA                                                                   >  SRR4302532.4931496/1‑94 (MQ=60)
                          TGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAA                                                                   <  SRR4302532.2567735/94‑1 (MQ=60)
                           GATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGATCAGGTCTGGAAC                                                                  >  SRR4302532.264624/1‑94 (MQ=60)
                            ATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACC                                                                 >  SRR4302532.6064194/1‑94 (MQ=60)
                              TAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCAT                                                               <  SRR4302532.1080912/94‑1 (MQ=60)
                              TAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCAT                                                               <  SRR4302532.763992/94‑1 (MQ=60)
                              TAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCAT                                                               <  SRR4302532.1127507/94‑1 (MQ=60)
                              TAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCAGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCAT                                                               >  SRR4302532.5190692/1‑94 (MQ=60)
                               AAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATA                                                              <  SRR4302532.2013888/94‑1 (MQ=60)
                                 AGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACT                                                            <  SRR4302532.6020916/94‑1 (MQ=60)
                                    TACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTC                                                         <  SRR4302532.1424492/94‑1 (MQ=60)
                                     ACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCT                                                        >  SRR4302532.4015533/1‑94 (MQ=60)
                                     ACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGACATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCT                                                        <  SRR4302532.747267/94‑1 (MQ=60)
                                      CCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTA                                                       <  SRR4302532.5534910/94‑1 (MQ=60)
                                        GCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACT                                                     <  SRR4302532.5378435/94‑1 (MQ=60)
                                        GCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACT                                                     <  SRR4302532.5130044/94‑1 (MQ=60)
                                         CGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTG                                                    >  SRR4302532.3020927/1‑94 (MQ=60)
                                          GTTTGAAGGTAACTCGCTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGG                                                   <  SRR4302532.5688198/94‑1 (MQ=60)
                                          GTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGG                                                   >  SRR4302532.1522473/1‑94 (MQ=60)
                                          GTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGG                                                   <  SRR4302532.2835499/94‑1 (MQ=60)
                                           TTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGA                                                  <  SRR4302532.2897059/94‑1 (MQ=60)
                                            TTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAA                                                 >  SRR4302532.5224275/1‑94 (MQ=60)
                                            TTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGGGGCGTATTCAACAACGCAGCTCAGGTCTGGCACCATACTTTCTACTTGAA                                                 >  SRR4302532.91326/1‑94 (MQ=60)
                                             TGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAAC                                                <  SRR4302532.3163462/94‑1 (MQ=60)
                                             TGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAAC                                                >  SRR4302532.4815179/1‑94 (MQ=60)
                                               AAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTG                                              <  SRR4302532.2850333/94‑1 (MQ=60)
                                                  GTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCT                                           >  SRR4302532.699552/1‑94 (MQ=60)
                                                   TAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTG                                          <  SRR4302532.1887682/94‑1 (MQ=60)
                                                   TAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTG                                          <  SRR4302532.3967860/94‑1 (MQ=60)
                                                   GAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTG                                          <  SRR4302532.1887681/94‑1 (MQ=60)
                                                    AAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGG                                         <  SRR4302532.4291688/94‑1 (MQ=60)
                                                    AAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGG                                         >  SRR4302532.1385769/1‑94 (MQ=60)
                                                      ATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCA                                       >  SRR4302532.5317486/1‑94 (MQ=60)
                                                       TCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCAC                                      >  SRR4302532.2247814/1‑94 (MQ=60)
                                                       TCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCGGGCAC                                      >  SRR4302532.2070951/1‑94 (MQ=60)
                                                        CACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACC                                     <  SRR4302532.4167797/94‑1 (MQ=60)
                                                        CACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACC                                     >  SRR4302532.2654879/1‑94 (MQ=60)
                                                        CACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACC                                     >  SRR4302532.1852528/1‑94 (MQ=60)
                                                         ACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCA                                    <  SRR4302532.2664583/94‑1 (MQ=60)
                                                          CTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGA                                   >  SRR4302532.3825233/1‑94 (MQ=60)
                                                           TGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAA                                  >  SRR4302532.3247649/1‑94 (MQ=60)
                                                            GGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAAC                                 <  SRR4302532.4954580/94‑1 (MQ=60)
                                                            GGAAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAAC                                 >  SRR4302532.5126909/1‑94 (MQ=60)
                                                            GGAAGAGAATATTCGCAGCTCTGAAGGTGGCATATACAACAACGCAGCTCAGGTCTGGAACCATACTTACTACTGGAACTGCCTGGCACCGAAC                                 <  SRR4302532.5826647/94‑1 (MQ=60)
                                                             GAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACG                                <  SRR4302532.4432409/94‑1 (MQ=60)
                                                             GAAGAGATTATTCGCAGCTCTGAAGGTGGCGTAGTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACG                                >  SRR4302532.5335089/1‑94 (MQ=60)
                                                              AAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGC                               <  SRR4302532.5735587/94‑1 (MQ=60)
                                                              AAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGC                               >  SRR4302532.1492389/1‑94 (MQ=60)
                                                              AAGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGC                               >  SRR4302532.4236405/1‑94 (MQ=60)
                                                               AGAGATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCG                              >  SRR4302532.5175679/1‑94 (MQ=60)
                                                                GAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCG                             >  SRR4302532.2025675/1‑94 (MQ=60)
                                                                  GATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGT                           <  SRR4302532.1950698/94‑1 (MQ=60)
                                                                  GATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGT                           <  SRR4302532.2895974/94‑1 (MQ=60)
                                                                   ATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGATCCATCCTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTG                          <  SRR4302532.2235878/94‑1 (MQ=60)
                                                                   ATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTG                          <  SRR4302532.964897/94‑1 (MQ=60)
                                                                   ATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTG                          <  SRR4302532.5371117/94‑1 (MQ=60)
                                                                   ATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTG                          <  SRR4302532.4701406/94‑1 (MQ=60)
                                                                   ATTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTG                          <  SRR4302532.4354308/94‑1 (MQ=60)
                                                                    TTATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGG                         <  SRR4302532.4869020/94‑1 (MQ=60)
                                                                      ATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCG                       <  SRR4302532.5121138/94‑1 (MQ=60)
                                                                      ATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCG                       >  SRR4302532.2926540/1‑94 (MQ=60)
                                                                      ATTCGCAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCG                       >  SRR4302532.1676487/1‑94 (MQ=60)
                                                                       TTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGA                      >  SRR4302532.1332138/1‑94 (MQ=60)
                                                                        TCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAA                     <  SRR4302532.4356391/94‑1 (MQ=60)
                                                                          GCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACC                   <  SRR4302532.6270268/94‑1 (MQ=60)
                                                                          GCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACC                   <  SRR4302532.1212850/94‑1 (MQ=60)
                                                                           CAGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCG                  <  SRR4302532.1127663/94‑1 (MQ=60)
                                                                            AGCTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACT‑GAACTGCCTGGCACCGAACGCCGGTGGCGAACCGAC                >  SRR4302532.5009922/1‑94 (MQ=60)
                                                                              CTCTGAAGGTGGCATATTCAGCAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACT               <  SRR4302532.761747/94‑1 (MQ=60)
                                                                              CTCTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACT               <  SRR4302532.1521066/94‑1 (MQ=60)
                                                                                CTGAAGGTGGCATATTCAACAACTCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGG             <  SRR4302532.4639987/94‑1 (MQ=60)
                                                                                CTGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGG             <  SRR4302532.1598724/94‑1 (MQ=60)
                                                                                 TGAAGGTGGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGA            >  SRR4302532.6234681/1‑94 (MQ=60)
                                                                                  GAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAA           >  SRR4302532.5909489/1‑94 (MQ=60)
                                                                                       TGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTC      <  SRR4302532.6203256/94‑1 (MQ=60)
                                                                                        GGCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCG     >  SRR4302532.43596/1‑94 (MQ=60)
                                                                                         GCATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGC    <  SRR4302532.6203857/94‑1 (MQ=60)
                                                                                          CGTATACAACAACGCAGCTCACGTCTGGAACCATACTTTCTACTGGAACCGCCTGACACCGAACGCCACTGGCGAACCGACTGccaaagtcgag   >  SRR4302532.284223/1‑83 (MQ=60)
                                                                                           GTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTG  >  SRR4302532.3102587/1‑94 (MQ=60)
                                                                                           ATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTG  <  SRR4302532.3381329/94‑1 (MQ=60)
                                                                                           ATATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACAGACTGGCAAAGTCGCTG  >  SRR4302532.236513/1‑94 (MQ=60)
                                                                                           |                                                                                             
GACTTATGTCACTAACCTGAACAACCTGATTAAAGGTACCGCGTTTGAAGGTAAATCACTGGAAGAGATTATTCGCAGCTCTGAAGGTGGCGTATTCAACAACGCAGCTCAGGTCTGGAACCATACTTTCTACTGGAACTGCCTGGCACCGAACGCCGGTGGCGAACCGACTGGAAAAGTCGCTG  >  NC_000913/1733500‑1733684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑