Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCA  >  NC_000913/1771221‑1771405
                                                                                           |                                                                                             
TTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCAT                                                                                             <  SRR4302532.3166721/94‑1 (MQ=60)
 TTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATG                                                                                            <  SRR4302532.1418734/94‑1 (MQ=60)
  TATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGG                                                                                           <  SRR4302532.4081991/94‑1 (MQ=60)
  TATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGG                                                                                           >  SRR4302532.720409/1‑94 (MQ=60)
    TGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGC                                                                                         >  SRR4302532.3968725/1‑94 (MQ=60)
      TGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTC                                                                                       <  SRR4302532.4063794/94‑1 (MQ=60)
      TGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTC                                                                                       <  SRR4302532.4679516/94‑1 (MQ=60)
      TGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTC                                                                                       <  SRR4302532.3040893/94‑1 (MQ=60)
      TGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTC                                                                                       >  SRR4302532.310308/1‑94 (MQ=60)
       GATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCG                                                                                      >  SRR4302532.5745350/1‑94 (MQ=60)
       GATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCG                                                                                      <  SRR4302532.163339/94‑1 (MQ=60)
         TTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTT                                                                                    <  SRR4302532.5567562/94‑1 (MQ=60)
         TTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTT                                                                                    >  SRR4302532.1279234/1‑94 (MQ=60)
         TTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTT                                                                                    <  SRR4302532.107610/94‑1 (MQ=60)
          TGTGGTGTGGATGCCCAACTATGCGACGGCTTTTGCTGGTATGTTAAAAGCTGAGGCATTAAAAACCATCGCTTATTACAGAATGGGGTTGTTG                                                                                   >  SRR4302532.4439470/1‑94 (MQ=60)
              GTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCT                                                                               >  SRR4302532.387156/1‑94 (MQ=60)
              GTGTGAATGCCCAAATATGCGATGGGTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCT                                                                               <  SRR4302532.4820014/94‑1 (MQ=60)
               TGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTG                                                                              >  SRR4302532.3004222/1‑94 (MQ=60)
                GTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGT                                                                             >  SRR4302532.936996/1‑94 (MQ=60)
                  GGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGT                                                                           >  SRR4302532.1286209/1‑94 (MQ=60)
                    ATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCT                                                                         <  SRR4302532.4526412/94‑1 (MQ=60)
                       CCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGGTGGTCTGTGTCTTTA                                                                      >  SRR4302532.41759/1‑94 (MQ=60)
                         CAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATT                                                                    >  SRR4302532.2125598/1‑94 (MQ=60)
                         CAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATT                                                                    >  SRR4302532.1382260/1‑94 (MQ=60)
                          AAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTT                                                                   >  SRR4302532.5113832/1‑94 (MQ=60)
                           AATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTT                                                                  >  SRR4302532.3559670/1‑94 (MQ=60)
                            ATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTT                                                                 >  SRR4302532.1729080/1‑94 (MQ=60)
                            ATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTT                                                                 <  SRR4302532.5488543/94‑1 (MQ=60)
                               TGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCC                                                              >  SRR4302532.2950350/1‑94 (MQ=60)
                                 CGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGA                                                            >  SRR4302532.3433231/1‑94 (MQ=60)
                                   ATGGCTTTTTCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCAC                                                          <  SRR4302532.1891448/94‑1 (MQ=60)
                                       CTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACT                                                      >  SRR4302532.3046566/1‑94 (MQ=60)
                                        TTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTG                                                     <  SRR4302532.1851370/94‑1 (MQ=60)
                                          TTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAA                                                   <  SRR4302532.4235654/94‑1 (MQ=60)
                                           TTCTGGTAGGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAA                                                  >  SRR4302532.3986902/1‑94 (MQ=60)
                                             CTGGTATGTCAGAAGCTTTGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGTCGCACTACTGAAAAA                                                >  SRR4302532.5680190/1‑94 (MQ=60)
                                              TGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAA                                               >  SRR4302532.1376746/1‑94 (MQ=60)
                                               GGTATGTCAGAAGCTGAGGCATT‑AAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAAT                                             >  SRR4302532.1880332/1‑94 (MQ=60)
                                                GTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAAT                                             <  SRR4302532.6333613/94‑1 (MQ=60)
                                                GTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAAT                                             >  SRR4302532.2381559/1‑94 (MQ=60)
                                                 TATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAACAATG                                            >  SRR4302532.158963/1‑94 (MQ=60)
                                                 TATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATG                                            >  SRR4302532.158962/1‑94 (MQ=60)
                                                 TATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATG                                            >  SRR4302532.6126635/1‑94 (MQ=60)
                                                  ATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGG                                           <  SRR4302532.366877/94‑1 (MQ=60)
                                                   TGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGT                                          <  SRR4302532.4497826/94‑1 (MQ=60)
                                                   TGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGT                                          <  SRR4302532.4058963/94‑1 (MQ=60)
                                                   TGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGT                                          >  SRR4302532.2232235/1‑94 (MQ=60)
                                                       AGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGG                                      >  SRR4302532.5746245/1‑94 (MQ=60)
                                                         AAGCTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCC                                    <  SRR4302532.4682894/94‑1 (MQ=60)
                                                            CTGAGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCAT                                 <  SRR4302532.1427435/94‑1 (MQ=60)
                                                             TGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATC                                <  SRR4302532.825363/94‑1 (MQ=60)
                                                               AGGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTG                              >  SRR4302532.2510990/1‑94 (MQ=60)
                                                                GGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGG                             <  SRR4302532.1837838/94‑1 (MQ=60)
                                                                GGCATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGG                             <  SRR4302532.5034327/94‑1 (MQ=60)
                                                                  CATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGC                           <  SRR4302532.3925261/94‑1 (MQ=60)
                                                                  CATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGC                           >  SRR4302532.4627449/1‑94 (MQ=60)
                                                                   ATTAAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCT                          <  SRR4302532.1130229/94‑1 (MQ=60)
                                                                   ATTAAAAACCATCTCTGATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGAT                          >  SRR4302532.6287208/1‑94 (MQ=60)
                                                                    TTAAAAACCATCTCTTATTACAGTATGGTCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTA                         <  SRR4302532.4498727/94‑1 (MQ=60)
                                                                      AAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAAT                       <  SRR4302532.69649/94‑1 (MQ=60)
                                                                      AAAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAAT                       >  SRR4302532.916019/1‑94 (MQ=60)
                                                                       AAAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATG                      >  SRR4302532.4196171/1‑94 (MQ=60)
                                                                        AAACCATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGT                     <  SRR4302532.3186003/94‑1 (MQ=60)
                                                                          ACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAT                   <  SRR4302532.5879969/94‑1 (MQ=60)
                                                                           CCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATT                  >  SRR4302532.296644/1‑94 (MQ=60)
                                                                            CATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAAAGTATTT                 >  SRR4302532.5673210/1‑94 (MQ=60)
                                                                             ATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTA                >  SRR4302532.2542925/1‑94 (MQ=60)
                                                                             ATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTA                <  SRR4302532.1322800/94‑1 (MQ=60)
                                                                             ATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTA                >  SRR4302532.2676703/1‑94 (MQ=60)
                                                                             ATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTA                >  SRR4302532.94857/1‑94 (MQ=60)
                                                                             ATCTCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTA                >  SRR4302532.2005919/1‑94 (MQ=60)
                                                                              TCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAA               >  SRR4302532.5902972/1‑94 (MQ=60)
                                                                               CTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAAC              >  SRR4302532.524366/1‑94 (MQ=60)
                                                                                TCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACT             <  SRR4302532.1541760/94‑1 (MQ=60)
                                                                                TCTTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACT             >  SRR4302532.6254929/1‑94 (MQ=60)
                                                                                  TTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCT           >  SRR4302532.3368066/1‑94 (MQ=60)
                                                                                  TTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCT           <  SRR4302532.1606335/94‑1 (MQ=60)
                                                                                  TTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCT           <  SRR4302532.2306620/94‑1 (MQ=60)
                                                                                  TTATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCT           <  SRR4302532.236744/94‑1 (MQ=60)
                                                                                   TATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTG          <  SRR4302532.2214075/94‑1 (MQ=60)
                                                                                   TATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGATTATAATGTTCCGGGCCATCTTGGCTAATGTATTTTACTCTG          >  SRR4302532.5840828/1‑94 (MQ=60)
                                                                                    ATTACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGC         >  SRR4302532.5369089/1‑94 (MQ=60)
                                                                                     TTACAGTATGGGCTTGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCA        <  SRR4302532.4896366/94‑1 (MQ=60)
                                                                                     TTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCA        <  SRR4302532.4896367/94‑1 (MQ=60)
                                                                                      TACAGCATGGGCTCCTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCAC       <  SRR4302532.683740/94‑1 (MQ=60)
                                                                                       ACAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACT      >  SRR4302532.1411063/1‑94 (MQ=60)
                                                                                        CAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTG     <  SRR4302532.5059072/94‑1 (MQ=60)
                                                                                        CAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTG     <  SRR4302532.4298784/94‑1 (MQ=60)
                                                                                        CAGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTG     <  SRR4302532.1415582/94‑1 (MQ=60)
                                                                                         AGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGG    >  SRR4302532.2535823/1‑94 (MQ=60)
                                                                                         AGCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGG    >  SRR4302532.20580/1‑94 (MQ=60)
                                                                                          GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGC   >  SRR4302532.5878514/1‑94 (MQ=60)
                                                                                          GCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGC   <  SRR4302532.2684106/94‑1 (MQ=60)
                                                                                          GCATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGC   <  SRR4302532.3288808/94‑1 (MQ=60)
                                                                                           TATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCA  <  SRR4302532.2257682/94‑1 (MQ=60)
                                                                                           CATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCA  <  SRR4302532.123718/94‑1 (MQ=60)
                                                                                           |                                                                                             
TTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACAGTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCA  >  NC_000913/1771221‑1771405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑